Wall clock time and date at job start Fri Apr 10 2020 14:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 119.99775 * 2 1 4 4 H 1.48505 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47164 * 299.99459 * 3 2 1 6 6 H 1.48506 * 109.47444 * 59.99944 * 3 2 1 7 7 C 1.38949 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00242 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00012 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99835 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00008 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47067 * 179.97438 * 12 10 9 14 14 C 1.46897 * 110.99753 * 282.43958 * 13 12 10 15 15 C 1.52998 * 109.47070 * 158.27516 * 14 13 12 16 16 O 1.42894 * 109.47245 * 64.55171 * 15 14 13 17 17 C 1.46897 * 110.99953 * 158.49035 * 13 12 10 18 18 H 1.09005 * 109.25076 * 153.23852 * 17 13 12 19 19 C 1.52734 * 109.25279 * 272.66758 * 17 13 12 20 20 C 1.53314 * 108.40409 * 171.34100 * 19 17 13 21 21 C 1.52740 * 108.37710 * 290.13739 * 20 19 17 22 22 C 1.50632 * 110.57819 * 51.15491 * 21 20 19 23 23 C 1.38909 * 117.74739 * 162.48755 * 22 21 20 24 24 C 1.37935 * 120.54093 * 179.43805 * 23 22 21 25 25 C 1.38264 * 119.76827 * 0.02562 * 24 23 22 26 26 C 1.37928 * 119.77635 * 0.13201 * 25 24 23 27 27 C 1.37663 * 122.56039 * 342.15084 * 22 21 20 28 28 H 0.97000 * 120.00027 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99392 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.47055 * 59.99265 * 12 10 9 31 31 H 1.09000 * 109.47138 * 299.99991 * 12 10 9 32 32 H 1.09005 * 109.47363 * 38.27255 * 14 13 12 33 33 H 1.09003 * 109.47607 * 278.27517 * 14 13 12 34 34 H 1.09002 * 109.47158 * 184.55374 * 15 14 13 35 35 H 1.09004 * 109.47006 * 304.55045 * 15 14 13 36 36 H 0.96705 * 114.00520 * 180.02562 * 16 15 14 37 37 H 1.09002 * 109.67740 * 291.07293 * 19 17 13 38 38 H 1.09008 * 109.67461 * 51.60722 * 19 17 13 39 39 H 1.08998 * 109.68828 * 170.41859 * 20 19 17 40 40 H 1.08999 * 109.68460 * 49.85096 * 20 19 17 41 41 H 1.09008 * 109.25458 * 290.87425 * 21 20 19 42 42 H 1.09000 * 109.25633 * 171.44288 * 21 20 19 43 43 H 1.07998 * 119.72970 * 359.45744 * 23 22 21 44 44 H 1.08002 * 120.11708 * 180.02562 * 24 23 22 45 45 H 1.08011 * 120.11130 * 180.14629 * 25 24 23 46 46 H 1.08001 * 119.72890 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3963 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8630 0.0010 13 7 2.1984 -5.9795 0.0017 14 6 2.7661 -6.1876 -1.3371 15 6 4.0934 -6.9391 -1.2171 16 8 3.8550 -8.2458 -0.6904 17 6 1.5704 -7.2087 0.5041 18 1 2.0783 -8.0728 0.0757 19 6 1.6977 -7.2539 2.0254 20 6 0.8539 -8.4227 2.5473 21 6 -0.6211 -8.0738 2.3584 22 6 -0.8840 -7.6344 0.9417 23 6 -2.1999 -7.6385 0.4970 24 6 -2.5075 -7.2362 -0.7860 25 6 -1.4981 -6.8259 -1.6373 26 6 -0.1905 -6.8243 -1.1986 27 6 0.1214 -7.2301 0.0928 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6181 -4.9208 -0.8896 31 1 0.6161 -4.9205 0.8903 32 1 2.9369 -5.2221 -1.8134 33 1 2.0709 -6.7720 -1.9397 34 1 4.5540 -7.0225 -2.2014 35 1 4.7603 -6.3941 -0.5489 36 1 4.6543 -8.7800 -0.5866 37 1 2.7415 -7.4024 2.3022 38 1 1.3339 -6.3191 2.4521 39 1 1.0609 -8.5813 3.6056 40 1 1.0919 -9.3265 1.9866 41 1 -0.8900 -7.2673 3.0406 42 1 -1.2293 -8.9504 2.5816 43 1 -2.9888 -7.9589 1.1614 44 1 -3.5330 -7.2417 -1.1246 45 1 -1.7329 -6.5075 -2.6424 46 1 0.5974 -6.5040 -1.8643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304129476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:29 Heat of formation + Delta-G solvation = -69.502146 kcal Electronic energy + Delta-G solvation = -28007.092749 eV Core-core repulsion = 24281.733278 eV Total energy + Delta-G solvation = -3725.359470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.81177 -39.96258 -38.49600 -37.06914 -36.35971 -35.79375 -33.25406 -32.29091 -31.08640 -30.59258 -29.87238 -27.50413 -25.94503 -24.35968 -23.53784 -22.81714 -22.32454 -21.14390 -20.13047 -19.68580 -18.39190 -17.96544 -17.42360 -16.93026 -16.52161 -16.23041 -16.19070 -16.05148 -15.78098 -15.47661 -15.07927 -14.74001 -14.62992 -14.36965 -14.20721 -13.99647 -13.61705 -13.51040 -13.26974 -13.18352 -13.01329 -12.86129 -12.60872 -12.41246 -12.38215 -12.26820 -12.12358 -11.97877 -11.74940 -11.49122 -11.24807 -11.13445 -10.77645 -10.33021 -9.99535 -9.57859 -9.49954 -9.05814 -8.45317 -5.94241 0.45278 0.48705 1.36280 1.40720 1.55358 2.06625 2.28171 2.68863 2.90374 3.21068 3.40250 3.43319 3.70298 3.81537 3.96654 4.03200 4.18273 4.19843 4.22174 4.32725 4.36417 4.41015 4.46620 4.51015 4.58423 4.59170 4.63439 4.73393 4.82417 4.90724 5.02880 5.03944 5.06237 5.13292 5.18657 5.25953 5.37326 5.41459 5.49043 5.63131 5.64087 5.71451 5.94847 6.12917 6.15510 6.26517 6.61588 6.99257 7.14015 7.57377 8.13310 8.72603 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.004254 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.590999 B = 6579.730632 C = 7555.380010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.329 4.329 8 H 0.080 0.920 9 N -0.577 5.577 10 C 0.443 3.557 11 O -0.610 6.610 12 C 0.063 3.937 13 N -0.509 5.509 14 C 0.050 3.950 15 C 0.095 3.905 16 O -0.577 6.577 17 C 0.121 3.879 18 H 0.121 0.879 19 C -0.101 4.101 20 C -0.109 4.109 21 C -0.080 4.080 22 C -0.082 4.082 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.135 4.135 26 C -0.145 4.145 27 C -0.112 4.112 28 H 0.277 0.723 29 H 0.392 0.608 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.392 0.608 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.131 0.869 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 -19.675 0.198 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.459 4.459 8 H 0.098 0.902 9 N -0.215 5.215 10 C 0.230 3.770 11 O -0.495 6.495 12 C -0.068 4.068 13 N -0.232 5.232 14 C -0.078 4.078 15 C 0.017 3.983 16 O -0.386 6.386 17 C 0.014 3.986 18 H 0.138 0.862 19 C -0.140 4.140 20 C -0.147 4.147 21 C -0.117 4.117 22 C -0.083 4.083 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.153 4.153 26 C -0.163 4.163 27 C -0.113 4.113 28 H 0.086 0.914 29 H 0.226 0.774 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.242 0.758 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.149 0.851 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.783 -19.181 0.505 19.388 hybrid contribution -0.204 1.021 -0.774 1.297 sum -2.987 -18.159 -0.268 18.405 Atomic orbital electron populations 1.69696 1.06926 1.29125 1.50720 1.26050 0.96515 1.02419 0.96414 0.84863 0.78046 0.77072 0.78298 1.19696 1.19569 1.19670 1.19698 0.92648 0.83900 1.49612 0.90229 1.41962 1.09129 1.04808 1.65592 1.20812 0.88342 0.85779 0.82047 1.90460 1.15374 1.87849 1.55846 1.21853 0.93594 0.89108 1.02274 1.61814 1.33114 1.03524 1.24716 1.22378 0.96397 0.99215 0.89810 1.21966 0.95561 0.83137 0.97620 1.86325 1.38163 1.26661 1.87405 1.20998 0.88500 0.92663 0.96452 0.86207 1.21463 1.00516 0.98425 0.93547 1.21502 0.93656 0.97507 1.01993 1.20547 0.97661 1.01887 0.91576 1.19935 0.92852 0.98971 0.96548 1.21459 0.96041 1.00450 0.96580 1.21354 0.99931 0.98878 0.94110 1.21280 0.92777 1.00499 1.00725 1.21573 0.97649 1.00890 0.96187 1.20462 0.96749 1.00031 0.94067 0.91397 0.77444 0.91399 0.89688 0.91776 0.92596 0.91613 0.94200 0.75784 0.91540 0.93917 0.89681 0.91106 0.90695 0.88726 0.83992 0.83999 0.85082 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.34 13.05 21.66 0.28 -51.06 16 2 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 3 Si 0.99 43.86 29.55 68.60 2.03 45.89 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 8 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.58 -31.16 5.29 -306.99 -1.62 -32.78 16 10 C 0.44 22.31 7.36 87.66 0.65 22.95 16 11 O -0.61 -34.57 15.14 -3.06 -0.05 -34.61 16 12 C 0.06 2.47 4.04 85.56 0.35 2.81 16 13 N -0.51 -17.81 3.76 -880.58 -3.31 -21.12 16 14 C 0.05 1.60 4.44 86.30 0.38 1.99 16 15 C 0.10 2.55 7.39 71.98 0.53 3.08 16 16 O -0.58 -13.01 10.77 -148.98 -1.61 -14.61 16 17 C 0.12 3.52 1.94 44.06 0.09 3.61 16 18 H 0.12 3.47 5.05 -2.38 -0.01 3.45 16 19 C -0.10 -2.74 5.49 30.61 0.17 -2.58 16 20 C -0.11 -2.16 5.98 30.61 0.18 -1.97 16 21 C -0.08 -1.57 5.67 29.74 0.17 -1.40 16 22 C -0.08 -2.02 5.74 -19.86 -0.11 -2.13 16 23 C -0.13 -2.80 9.61 22.36 0.21 -2.58 16 24 C -0.12 -2.77 10.05 22.20 0.22 -2.55 16 25 C -0.13 -3.39 10.05 22.20 0.22 -3.17 16 26 C -0.15 -4.12 6.72 22.36 0.15 -3.97 16 27 C -0.11 -3.13 4.16 -19.86 -0.08 -3.21 16 28 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.39 20.55 7.90 -92.71 -0.73 19.82 16 30 H 0.07 2.55 5.17 -2.39 -0.01 2.53 16 31 H 0.08 3.32 6.81 -2.39 -0.02 3.30 16 32 H 0.06 2.42 6.94 -2.38 -0.02 2.40 16 33 H 0.06 1.65 5.28 -2.39 -0.01 1.64 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.39 5.12 9.12 -74.05 -0.68 4.45 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.33 7.45 -2.38 -0.02 1.31 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 41 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.09 1.41 8.13 -2.39 -0.02 1.39 16 43 H 0.14 2.33 8.05 -2.91 -0.02 2.31 16 44 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 45 H 0.13 2.84 8.06 -2.90 -0.02 2.82 16 46 H 0.12 3.45 3.95 -2.91 -0.01 3.44 16 Total: -1.00 -70.43 356.93 -0.25 -70.68 By element: Atomic # 1 Polarization: 45.85 SS G_CDS: -0.38 Total: 45.46 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 4.41 Total: -7.86 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -4.65 Total: -104.95 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -1.65 Total: -49.23 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.43 -0.25 -70.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304129476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.182 kcal (2) G-P(sol) polarization free energy of solvation -70.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds