Wall clock time and date at job start Fri Apr 10 2020 14:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 120.00079 * 2 1 4 4 H 1.48492 * 109.47067 * 270.00600 * 3 2 1 5 5 H 1.48507 * 109.46564 * 30.00485 * 3 2 1 6 6 H 1.48494 * 109.46895 * 150.00096 * 3 2 1 7 7 C 1.38943 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99968 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00395 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00485 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99569 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00010 * 180.27726 * 10 9 7 13 13 N 1.46908 * 109.46857 * 179.72619 * 12 10 9 14 14 C 1.46896 * 110.99942 * 66.04208 * 13 12 10 15 15 C 1.53001 * 109.46955 * 196.50465 * 14 13 12 16 16 O 1.42899 * 109.46615 * 65.00616 * 15 14 13 17 17 C 1.46904 * 110.99564 * 189.99992 * 13 12 10 18 18 H 1.08995 * 109.24962 * 41.78890 * 17 13 12 19 19 C 1.52735 * 109.25094 * 282.31713 * 17 13 12 20 20 C 1.53326 * 108.37069 * 188.64533 * 19 17 13 21 21 C 1.52737 * 108.37688 * 69.92115 * 20 19 17 22 22 C 1.50627 * 110.59189 * 308.94244 * 21 20 19 23 23 C 1.38908 * 117.75481 * 197.46600 * 22 21 20 24 24 C 1.37933 * 120.55040 * 180.23532 * 23 22 21 25 25 C 1.38273 * 119.76946 * 0.02562 * 24 23 22 26 26 C 1.37931 * 119.76916 * 359.88829 * 25 24 23 27 27 C 1.37619 * 122.55300 * 17.56754 * 22 21 20 28 28 H 0.97003 * 120.00439 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99713 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47127 * 299.72116 * 12 10 9 31 31 H 1.08991 * 109.47319 * 59.72587 * 12 10 9 32 32 H 1.08990 * 109.47495 * 316.51160 * 14 13 12 33 33 H 1.09006 * 109.47173 * 76.51485 * 14 13 12 34 34 H 1.09001 * 109.47141 * 184.99994 * 15 14 13 35 35 H 1.08999 * 109.47331 * 305.00503 * 15 14 13 36 36 H 0.96703 * 114.00017 * 179.97438 * 16 15 14 37 37 H 1.08999 * 109.68611 * 308.36329 * 19 17 13 38 38 H 1.08996 * 109.68418 * 68.92512 * 19 17 13 39 39 H 1.09001 * 109.68772 * 189.64821 * 20 19 17 40 40 H 1.09004 * 109.68594 * 310.16741 * 20 19 17 41 41 H 1.08994 * 109.25219 * 69.23348 * 21 20 19 42 42 H 1.09007 * 109.25227 * 188.69497 * 21 20 19 43 43 H 1.08002 * 119.72923 * 0.22295 * 23 22 21 44 44 H 1.07994 * 120.11569 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.11452 * 179.87156 * 25 24 23 46 46 H 1.07995 * 119.72496 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0001 12 6 1.2437 -4.8629 -0.0069 13 7 2.1984 -5.9795 -0.0122 14 6 2.9637 -6.0237 1.2409 15 6 4.2001 -6.9049 1.0525 16 8 5.0742 -6.3009 0.0969 17 6 1.5138 -7.2561 -0.2565 18 1 0.7657 -7.1190 -1.0372 19 6 0.8241 -7.7115 1.0279 20 6 0.3035 -9.1382 0.8170 21 6 1.5019 -10.0823 0.7447 22 6 2.5131 -9.5796 -0.2521 23 6 3.4670 -10.4771 -0.7147 24 6 4.4232 -10.0769 -1.6247 25 6 4.4334 -8.7715 -2.0805 26 6 3.4860 -7.8792 -1.6237 27 6 2.5210 -8.2811 -0.7081 28 1 -0.4851 0.8400 0.0004 29 1 0.3533 -2.3906 -0.0005 30 1 0.6171 -4.9249 0.8828 31 1 0.6171 -4.9164 -0.8970 32 1 3.2743 -5.0150 1.5128 33 1 2.3399 -6.4378 2.0332 34 1 4.7200 -7.0100 2.0048 35 1 3.8945 -7.8882 0.6948 36 1 5.8812 -6.8061 -0.0725 37 1 1.5373 -7.6991 1.8520 38 1 -0.0094 -7.0461 1.2528 39 1 -0.3378 -9.4222 1.6514 40 1 -0.2613 -9.1892 -0.1139 41 1 1.9680 -10.1474 1.7278 42 1 1.1616 -11.0727 0.4422 43 1 3.4600 -11.4968 -0.3588 44 1 5.1617 -10.7805 -1.9794 45 1 5.1809 -8.4517 -2.7914 46 1 3.4944 -6.8599 -1.9805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304129477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:34 Heat of formation + Delta-G solvation = -39.639472 kcal Electronic energy + Delta-G solvation = -27997.344337 eV Core-core repulsion = 24273.279810 eV Total energy + Delta-G solvation = -3724.064528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.72748 -38.42627 -37.03058 -36.12346 -34.73384 -33.73849 -31.47174 -31.13990 -30.28186 -29.34016 -28.39109 -25.98618 -24.14331 -23.26064 -22.82502 -22.06494 -20.68742 -19.16585 -18.99114 -17.77223 -17.16290 -16.56132 -15.90588 -15.63389 -15.43179 -15.03222 -14.75812 -14.53664 -14.15391 -13.95630 -13.87271 -13.69636 -13.20391 -13.15642 -12.90997 -12.62146 -12.50604 -12.28430 -12.16766 -11.80980 -11.57072 -11.43704 -11.30347 -11.19438 -10.95924 -10.74428 -10.61907 -10.45520 -10.34121 -10.22469 -10.13984 -9.56702 -9.37554 -8.57003 -8.40624 -8.20644 -7.87076 -7.71249 -6.34453 -3.74393 1.42599 1.54461 3.22626 3.30496 3.36685 3.81043 3.99533 4.06219 4.28569 4.57722 4.64273 4.76382 4.80625 4.95764 5.06937 5.13577 5.15666 5.25182 5.31369 5.36077 5.45663 5.49265 5.52986 5.59101 5.70327 5.73491 5.76282 5.80980 5.87462 5.91957 5.94265 5.99906 6.07508 6.14217 6.23081 6.27452 6.37104 6.53959 6.58401 6.72869 6.81786 7.16055 7.37033 7.48499 7.62375 8.14695 8.15698 8.71355 9.27012 9.63827 10.17145 10.83678 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021971 B = 0.003421 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.092806 B = 8182.587466 C = 8862.740155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.020 3.980 3 Si 0.928 3.072 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.294 4.294 8 H 0.102 0.898 9 N -0.569 5.569 10 C 0.443 3.557 11 O -0.561 6.561 12 C 0.044 3.956 13 N -0.493 5.493 14 C 0.046 3.954 15 C 0.075 3.925 16 O -0.534 6.534 17 C 0.119 3.881 18 H 0.089 0.911 19 C -0.161 4.161 20 C -0.113 4.113 21 C -0.079 4.079 22 C -0.083 4.083 23 C -0.136 4.136 24 C -0.124 4.124 25 C -0.135 4.135 26 C -0.066 4.066 27 C -0.062 4.062 28 H 0.270 0.730 29 H 0.390 0.610 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.046 0.954 34 H 0.028 0.972 35 H 0.055 0.945 36 H 0.356 0.644 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.118 0.882 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.508 -21.683 1.082 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.424 4.424 8 H 0.120 0.880 9 N -0.207 5.207 10 C 0.228 3.772 11 O -0.443 6.443 12 C -0.087 4.087 13 N -0.216 5.216 14 C -0.082 4.082 15 C -0.004 4.004 16 O -0.335 6.335 17 C 0.010 3.990 18 H 0.107 0.893 19 C -0.200 4.200 20 C -0.151 4.151 21 C -0.116 4.116 22 C -0.084 4.084 23 C -0.154 4.154 24 C -0.142 4.142 25 C -0.154 4.154 26 C -0.084 4.084 27 C -0.062 4.062 28 H 0.080 0.920 29 H 0.223 0.777 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.200 0.800 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.063 -20.943 0.696 21.056 hybrid contribution -0.349 0.265 0.675 0.805 sum 1.715 -20.678 1.371 20.794 Atomic orbital electron populations 1.69611 1.05889 1.27946 1.51245 1.25219 0.95600 0.99580 0.97648 0.85888 0.79219 0.81018 0.78341 1.20482 1.21054 1.19489 1.19681 0.93313 0.82260 1.47121 0.88005 1.41867 1.09067 1.04556 1.65229 1.19768 0.88594 0.84488 0.84400 1.90583 1.13249 1.86668 1.53802 1.21885 0.93994 0.91453 1.01347 1.61724 1.23928 1.00256 1.35644 1.22395 0.92979 1.03049 0.89735 1.22382 0.90952 0.96382 0.90642 1.86844 1.33578 1.50344 1.62750 1.20582 0.93241 0.88581 0.96568 0.89269 1.22364 1.00814 0.97033 0.99797 1.21472 0.97053 0.94586 1.02029 1.20451 0.94494 0.98834 0.97794 1.19548 0.97152 0.93229 0.98442 1.20977 0.96164 0.99008 0.99227 1.21013 0.98769 0.96326 0.98079 1.21115 0.99664 0.93535 1.01041 1.21373 0.92429 1.00057 0.94540 1.19406 0.96965 0.92678 0.97184 0.92035 0.77674 0.93596 0.89463 0.87921 0.93649 0.95435 0.92706 0.80015 0.90410 0.91257 0.91621 0.91597 0.91047 0.91097 0.86873 0.86791 0.86433 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.46 29.55 -169.99 -5.02 16.43 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.29 -8.31 9.68 -14.94 -0.14 -8.45 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 9 N -0.57 -14.56 5.29 -10.97 -0.06 -14.62 16 10 C 0.44 10.51 7.34 -10.99 -0.08 10.43 16 11 O -0.56 -15.29 14.06 5.55 0.08 -15.21 16 12 C 0.04 0.79 5.18 -4.97 -0.03 0.77 16 13 N -0.49 -8.12 3.27 -229.68 -0.75 -8.87 16 14 C 0.05 0.76 4.51 -3.83 -0.02 0.74 16 15 C 0.07 1.12 6.36 37.16 0.24 1.35 16 16 O -0.53 -8.94 12.16 -35.23 -0.43 -9.37 16 17 C 0.12 1.57 2.17 -69.03 -0.15 1.42 16 18 H 0.09 1.16 7.75 -51.93 -0.40 0.76 16 19 C -0.16 -1.79 4.56 -26.70 -0.12 -1.91 16 20 C -0.11 -1.03 5.98 -26.70 -0.16 -1.19 16 21 C -0.08 -0.71 5.67 -28.05 -0.16 -0.87 16 22 C -0.08 -0.93 5.02 -104.64 -0.52 -1.45 16 23 C -0.14 -1.41 9.61 -39.45 -0.38 -1.79 16 24 C -0.12 -1.29 10.05 -39.68 -0.40 -1.69 16 25 C -0.14 -1.59 10.05 -39.68 -0.40 -1.99 16 26 C -0.07 -0.90 6.46 -39.42 -0.25 -1.16 16 27 C -0.06 -0.79 3.11 -104.61 -0.33 -1.12 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 30 H 0.05 0.74 7.53 -51.93 -0.39 0.35 16 31 H 0.09 1.43 7.83 -51.93 -0.41 1.02 16 32 H 0.10 2.15 5.81 -51.93 -0.30 1.84 16 33 H 0.05 0.66 5.21 -51.93 -0.27 0.39 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.76 3.95 -51.93 -0.21 0.56 16 36 H 0.36 4.44 9.12 45.56 0.42 4.85 16 37 H 0.08 0.90 5.48 -51.93 -0.28 0.62 16 38 H 0.07 0.76 7.59 -51.93 -0.39 0.37 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.55 8.13 -51.92 -0.42 0.13 16 43 H 0.11 0.95 8.05 -52.49 -0.42 0.53 16 44 H 0.11 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 46 H 0.14 2.28 7.60 -52.49 -0.40 1.88 16 LS Contribution 355.99 15.07 5.36 5.36 Total: -1.00 -32.19 355.99 -8.95 -41.14 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -5.85 Total: 15.82 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.00 Total: -6.45 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.09 Total: -47.72 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.35 Total: -24.58 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.19 -8.95 -41.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304129477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.499 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds