Wall clock time and date at job start Fri Apr 10 2020 14:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 120.00079 * 2 1 4 4 H 1.48492 * 109.47067 * 270.00600 * 3 2 1 5 5 H 1.48507 * 109.46564 * 30.00485 * 3 2 1 6 6 H 1.48494 * 109.46895 * 150.00096 * 3 2 1 7 7 C 1.38943 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99968 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00395 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00485 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99569 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00010 * 180.27726 * 10 9 7 13 13 N 1.46908 * 109.46857 * 179.72619 * 12 10 9 14 14 C 1.46896 * 110.99942 * 66.04208 * 13 12 10 15 15 C 1.53001 * 109.46955 * 196.50465 * 14 13 12 16 16 O 1.42899 * 109.46615 * 65.00616 * 15 14 13 17 17 C 1.46904 * 110.99564 * 189.99992 * 13 12 10 18 18 H 1.08995 * 109.24962 * 41.78890 * 17 13 12 19 19 C 1.52735 * 109.25094 * 282.31713 * 17 13 12 20 20 C 1.53326 * 108.37069 * 188.64533 * 19 17 13 21 21 C 1.52737 * 108.37688 * 69.92115 * 20 19 17 22 22 C 1.50627 * 110.59189 * 308.94244 * 21 20 19 23 23 C 1.38908 * 117.75481 * 197.46600 * 22 21 20 24 24 C 1.37933 * 120.55040 * 180.23532 * 23 22 21 25 25 C 1.38273 * 119.76946 * 0.02562 * 24 23 22 26 26 C 1.37931 * 119.76916 * 359.88829 * 25 24 23 27 27 C 1.37619 * 122.55300 * 17.56754 * 22 21 20 28 28 H 0.97003 * 120.00439 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99713 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.47127 * 299.72116 * 12 10 9 31 31 H 1.08991 * 109.47319 * 59.72587 * 12 10 9 32 32 H 1.08990 * 109.47495 * 316.51160 * 14 13 12 33 33 H 1.09006 * 109.47173 * 76.51485 * 14 13 12 34 34 H 1.09001 * 109.47141 * 184.99994 * 15 14 13 35 35 H 1.08999 * 109.47331 * 305.00503 * 15 14 13 36 36 H 0.96703 * 114.00017 * 179.97438 * 16 15 14 37 37 H 1.08999 * 109.68611 * 308.36329 * 19 17 13 38 38 H 1.08996 * 109.68418 * 68.92512 * 19 17 13 39 39 H 1.09001 * 109.68772 * 189.64821 * 20 19 17 40 40 H 1.09004 * 109.68594 * 310.16741 * 20 19 17 41 41 H 1.08994 * 109.25219 * 69.23348 * 21 20 19 42 42 H 1.09007 * 109.25227 * 188.69497 * 21 20 19 43 43 H 1.08002 * 119.72923 * 0.22295 * 23 22 21 44 44 H 1.07994 * 120.11569 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.11452 * 179.87156 * 25 24 23 46 46 H 1.07995 * 119.72496 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0001 12 6 1.2437 -4.8629 -0.0069 13 7 2.1984 -5.9795 -0.0122 14 6 2.9637 -6.0237 1.2409 15 6 4.2001 -6.9049 1.0525 16 8 5.0742 -6.3009 0.0969 17 6 1.5138 -7.2561 -0.2565 18 1 0.7657 -7.1190 -1.0372 19 6 0.8241 -7.7115 1.0279 20 6 0.3035 -9.1382 0.8170 21 6 1.5019 -10.0823 0.7447 22 6 2.5131 -9.5796 -0.2521 23 6 3.4670 -10.4771 -0.7147 24 6 4.4232 -10.0769 -1.6247 25 6 4.4334 -8.7715 -2.0805 26 6 3.4860 -7.8792 -1.6237 27 6 2.5210 -8.2811 -0.7081 28 1 -0.4851 0.8400 0.0004 29 1 0.3533 -2.3906 -0.0005 30 1 0.6171 -4.9249 0.8828 31 1 0.6171 -4.9164 -0.8970 32 1 3.2743 -5.0150 1.5128 33 1 2.3399 -6.4378 2.0332 34 1 4.7200 -7.0100 2.0048 35 1 3.8945 -7.8882 0.6948 36 1 5.8812 -6.8061 -0.0725 37 1 1.5373 -7.6991 1.8520 38 1 -0.0094 -7.0461 1.2528 39 1 -0.3378 -9.4222 1.6514 40 1 -0.2613 -9.1892 -0.1139 41 1 1.9680 -10.1474 1.7278 42 1 1.1616 -11.0727 0.4422 43 1 3.4600 -11.4968 -0.3588 44 1 5.1617 -10.7805 -1.9794 45 1 5.1809 -8.4517 -2.7914 46 1 3.4944 -6.8599 -1.9805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304129477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:33 Heat of formation + Delta-G solvation = -62.527037 kcal Electronic energy + Delta-G solvation = -27998.336817 eV Core-core repulsion = 24273.279810 eV Total energy + Delta-G solvation = -3725.057007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74130 -40.08328 -38.34631 -37.26046 -36.03770 -35.52228 -33.24182 -32.44891 -31.15520 -30.68795 -29.40324 -27.56403 -25.79230 -24.36899 -23.65862 -23.05569 -21.85425 -20.83624 -20.04485 -19.80833 -18.43840 -17.83522 -17.27038 -16.84165 -16.50116 -16.41694 -16.10288 -15.90509 -15.64378 -15.34866 -15.14466 -14.76964 -14.44099 -14.27528 -14.08908 -13.88391 -13.68857 -13.55479 -13.39027 -13.27353 -13.00575 -12.78788 -12.55724 -12.39682 -12.27040 -12.15147 -12.12317 -11.78223 -11.63330 -11.47621 -11.37598 -11.13066 -10.74573 -10.19869 -9.94887 -9.44801 -9.23205 -9.01255 -8.43904 -5.91615 0.54961 0.65422 1.37837 1.40486 1.53430 2.11727 2.29471 2.72268 3.02766 3.23038 3.40098 3.53520 3.77792 3.85650 3.99741 4.10953 4.20591 4.26311 4.30542 4.40502 4.42727 4.46937 4.47596 4.50845 4.55730 4.61963 4.67724 4.73667 4.75769 4.84836 4.99280 5.08275 5.10163 5.17293 5.20032 5.30733 5.38818 5.42531 5.44324 5.73024 5.80861 5.86549 5.95931 6.14049 6.24588 6.35138 6.65633 7.09155 7.17633 7.61699 8.19735 8.73832 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021971 B = 0.003421 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.092806 B = 8182.587466 C = 8862.740155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.328 4.328 8 H 0.075 0.925 9 N -0.579 5.579 10 C 0.440 3.560 11 O -0.600 6.600 12 C 0.058 3.942 13 N -0.509 5.509 14 C 0.049 3.951 15 C 0.079 3.921 16 O -0.562 6.562 17 C 0.120 3.880 18 H 0.087 0.913 19 C -0.157 4.157 20 C -0.108 4.108 21 C -0.078 4.078 22 C -0.083 4.083 23 C -0.134 4.134 24 C -0.121 4.121 25 C -0.143 4.143 26 C -0.083 4.083 27 C -0.075 4.075 28 H 0.276 0.724 29 H 0.394 0.606 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.372 0.628 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.122 0.878 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 -24.221 1.695 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.213 4.213 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.458 4.458 8 H 0.093 0.907 9 N -0.217 5.217 10 C 0.227 3.773 11 O -0.484 6.484 12 C -0.074 4.074 13 N -0.232 5.232 14 C -0.079 4.079 15 C 0.001 3.999 16 O -0.367 6.367 17 C 0.012 3.988 18 H 0.105 0.895 19 C -0.196 4.196 20 C -0.146 4.146 21 C -0.115 4.115 22 C -0.084 4.084 23 C -0.152 4.152 24 C -0.138 4.138 25 C -0.161 4.161 26 C -0.102 4.102 27 C -0.076 4.076 28 H 0.086 0.914 29 H 0.228 0.772 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.218 0.782 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.140 0.860 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.363 -23.508 1.307 23.584 hybrid contribution -0.093 0.968 0.445 1.069 sum 1.270 -22.541 1.752 22.644 Atomic orbital electron populations 1.69671 1.06737 1.29092 1.50917 1.25978 0.96528 1.02215 0.96598 0.84967 0.77870 0.77150 0.78579 1.19768 1.19438 1.19955 1.19605 0.92513 0.84117 1.49519 0.90689 1.41925 1.09142 1.04634 1.66046 1.20801 0.88473 0.85885 0.82111 1.90556 1.15360 1.87568 1.54913 1.21722 0.93696 0.88880 1.03053 1.61647 1.24335 1.01355 1.35836 1.22316 0.94272 1.00702 0.90598 1.22413 0.90175 0.96427 0.90888 1.86808 1.34774 1.51660 1.63408 1.20625 0.93339 0.87056 0.97736 0.89492 1.22309 1.00475 0.98671 0.98097 1.21461 0.97383 0.92935 1.02856 1.20522 0.93786 0.99560 0.97587 1.19818 0.97766 0.92375 0.98422 1.21336 0.95301 1.00107 0.98459 1.21299 0.99171 0.95832 0.97541 1.21211 0.99373 0.94155 1.01314 1.21113 0.94273 0.98746 0.96055 1.19380 0.96978 0.93516 0.97706 0.91433 0.77226 0.91481 0.87799 0.92785 0.91404 0.94238 0.91088 0.78209 0.90789 0.91160 0.89701 0.91573 0.90044 0.89050 0.84115 0.84317 0.85971 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.05 13.05 21.66 0.28 -50.77 16 2 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 3 Si 0.99 44.40 29.55 68.60 2.03 46.42 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.33 -19.26 9.68 84.04 0.81 -18.44 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.58 -30.78 5.29 -306.99 -1.62 -32.40 16 10 C 0.44 21.86 7.34 87.66 0.64 22.50 16 11 O -0.60 -34.63 14.06 -3.05 -0.04 -34.68 16 12 C 0.06 2.09 5.18 85.55 0.44 2.54 16 13 N -0.51 -17.08 3.27 -880.58 -2.88 -19.96 16 14 C 0.05 1.65 4.51 86.30 0.39 2.04 16 15 C 0.08 2.36 6.36 71.98 0.46 2.82 16 16 O -0.56 -19.55 12.16 -148.98 -1.81 -21.36 16 17 C 0.12 3.09 2.17 44.06 0.10 3.18 16 18 H 0.09 2.23 7.75 -2.39 -0.02 2.21 16 19 C -0.16 -3.15 4.56 30.62 0.14 -3.02 16 20 C -0.11 -1.61 5.98 30.62 0.18 -1.43 16 21 C -0.08 -1.10 5.67 29.74 0.17 -0.93 16 22 C -0.08 -1.62 5.02 -19.87 -0.10 -1.72 16 23 C -0.13 -2.31 9.61 22.36 0.21 -2.09 16 24 C -0.12 -2.20 10.05 22.21 0.22 -1.97 16 25 C -0.14 -3.25 10.05 22.21 0.22 -3.03 16 26 C -0.08 -2.32 6.46 22.37 0.14 -2.17 16 27 C -0.08 -1.85 3.11 -19.86 -0.06 -1.91 16 28 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.39 19.90 7.90 -92.71 -0.73 19.17 16 30 H 0.07 2.15 7.53 -2.39 -0.02 2.13 16 31 H 0.10 3.41 7.83 -2.39 -0.02 3.39 16 32 H 0.05 2.38 5.81 -2.39 -0.01 2.36 16 33 H 0.07 1.94 5.21 -2.38 -0.01 1.93 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.90 3.95 -2.39 -0.01 1.89 16 36 H 0.37 9.55 9.12 -74.06 -0.68 8.87 16 37 H 0.07 1.55 5.48 -2.39 -0.01 1.54 16 38 H 0.07 1.40 7.59 -2.39 -0.02 1.38 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.00 8.10 -2.38 -0.02 0.98 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 0.97 8.13 -2.38 -0.02 0.95 16 43 H 0.14 1.66 8.05 -2.91 -0.02 1.64 16 44 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 45 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 46 H 0.10 3.54 7.60 -2.91 -0.02 3.51 16 Total: -1.00 -72.67 355.99 0.01 -72.66 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -0.39 Total: 44.03 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 4.44 Total: -3.94 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -4.22 Total: -103.14 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -1.85 Total: -56.04 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -72.67 0.01 -72.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304129477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.137 kcal (2) G-P(sol) polarization free energy of solvation -72.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds