Wall clock time and date at job start Fri Apr 10 2020 14:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47303 * 2 1 4 4 C 1.46502 * 119.99874 * 269.99998 * 3 2 1 5 5 C 1.50706 * 109.46890 * 269.99685 * 4 3 2 6 6 H 1.07998 * 119.99854 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99874 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00317 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99841 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47231 * 60.00035 * 9 7 5 11 11 H 1.48501 * 109.47387 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47311 * 300.00021 * 9 7 5 13 13 C 1.34783 * 120.00392 * 89.99452 * 3 2 1 14 14 O 1.21276 * 119.99983 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99606 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47047 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99968 * 293.95480 * 16 15 13 18 18 C 1.38388 * 111.00378 * 170.00068 * 16 15 13 19 19 N 1.32908 * 120.76768 * 359.97438 * 18 16 15 20 20 C 1.32050 * 121.18886 * 180.02562 * 19 18 16 21 21 N 1.31637 * 122.46204 * 0.21298 * 20 19 18 22 22 C 1.32893 * 120.64326 * 359.57828 * 21 20 19 23 23 N 1.37205 * 134.92277 * 180.09476 * 22 21 20 24 24 H 0.97000 * 126.27551 * 0.24363 * 23 22 21 25 25 C 1.36313 * 107.44444 * 180.28472 * 23 22 21 26 26 N 1.30139 * 109.97698 * 359.97438 * 25 23 22 27 27 C 1.35471 * 109.44251 * 0.02562 * 26 25 23 28 28 H 1.08996 * 109.47525 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47183 * 300.00465 * 1 2 3 30 30 H 1.09007 * 109.46691 * 60.00168 * 1 2 3 31 31 H 1.08998 * 109.47183 * 239.99534 * 2 1 3 32 32 H 1.09007 * 109.46691 * 119.99832 * 2 1 3 33 33 H 1.08995 * 109.47390 * 29.99644 * 4 3 2 34 34 H 1.09002 * 109.47206 * 150.00302 * 4 3 2 35 35 H 0.97004 * 120.00491 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47456 * 60.00135 * 15 13 3 37 37 H 1.08997 * 109.47150 * 299.99498 * 15 13 3 38 38 H 1.08997 * 109.47566 * 296.04084 * 17 16 15 39 39 H 1.09000 * 109.47215 * 56.04908 * 17 16 15 40 40 H 1.09004 * 109.47326 * 176.04134 * 17 16 15 41 41 H 1.07999 * 118.76778 * 179.97438 * 20 19 18 42 42 H 1.08002 * 125.01221 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1495 2.3903 -2.8774 8 7 3.3496 3.1263 -3.6176 9 14 5.9135 2.0962 -3.4169 10 1 6.1403 0.6394 -3.5952 11 1 6.1616 2.7972 -4.7023 12 1 6.8414 2.6184 -2.3817 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2060 3.5888 17 6 3.7475 2.5097 3.6267 18 6 1.8848 1.6728 4.7927 19 7 1.2747 0.4928 4.8358 20 6 0.8644 -0.0236 5.9798 21 7 1.0281 0.5919 7.1318 22 6 1.6315 1.7746 7.1882 23 7 1.9519 2.6519 8.1933 24 1 1.7697 2.5330 9.1386 25 6 2.5725 3.7214 7.6197 26 7 2.6509 3.5519 6.3318 27 6 2.0868 2.3664 5.9979 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 3.6757 3.5168 -4.4435 36 1 2.6227 0.4188 2.5300 37 1 0.9443 1.0116 2.5302 38 1 4.3073 1.5950 3.8214 39 1 4.0559 2.9275 2.6683 40 1 3.9454 3.2323 4.4185 41 1 0.3726 -0.9850 5.9694 42 1 2.9443 4.5826 8.1551 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439141399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:05 Heat of formation + Delta-G solvation = 91.506284 kcal Electronic energy + Delta-G solvation = -26698.030263 eV Core-core repulsion = 22908.405050 eV Total energy + Delta-G solvation = -3789.625213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.80051 -39.99059 -39.00083 -37.10899 -35.19882 -33.41792 -32.76076 -32.30091 -30.23764 -29.99404 -28.65570 -26.76680 -25.81463 -23.96507 -23.43964 -22.93267 -22.14285 -21.56042 -19.31197 -18.38840 -17.92537 -17.24165 -16.52200 -16.29736 -16.14050 -15.59791 -15.35400 -14.99319 -14.61282 -14.36567 -14.24382 -14.08715 -13.61424 -13.35830 -13.28937 -12.72642 -12.53185 -12.11692 -11.96164 -11.70615 -11.66514 -11.46182 -11.33083 -11.11732 -10.88084 -10.66323 -10.60948 -10.49085 -10.08879 -9.93393 -9.62264 -9.55676 -9.30700 -8.78514 -8.40510 -8.14280 -7.62148 -6.01358 -4.06205 0.48881 1.04714 2.20085 2.47814 3.16172 3.33520 3.38055 3.39106 3.45591 3.62319 3.78557 4.02060 4.02686 4.28990 4.47027 4.52104 4.75723 5.06609 5.20789 5.29443 5.33125 5.40613 5.50297 5.56180 5.64135 5.72066 5.73942 5.86217 6.10257 6.12971 6.27238 6.29881 6.38185 6.55964 6.66171 6.85123 7.07771 7.12766 7.43964 7.49194 7.58760 7.95041 7.99356 8.26661 8.44925 8.92759 9.12432 9.58758 11.06637 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.003217 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.716373 B = 8702.759640 C = 9566.830651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.595 5.595 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.505 3.495 14 O -0.526 6.526 15 C 0.042 3.958 16 N -0.441 5.441 17 C 0.024 3.976 18 C 0.436 3.564 19 N -0.572 5.572 20 C 0.348 3.652 21 N -0.549 5.549 22 C 0.288 3.712 23 N -0.583 5.583 24 H 0.430 0.570 25 C 0.255 3.745 26 N -0.451 5.451 27 C -0.067 4.067 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.033 0.967 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.205 0.795 42 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.520 -5.995 23.112 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.328 5.328 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.402 6.402 15 C -0.088 4.088 16 N -0.155 5.155 17 C -0.121 4.121 18 C 0.187 3.813 19 N -0.297 5.297 20 C 0.056 3.944 21 N -0.272 5.272 22 C 0.045 3.955 23 N -0.198 5.198 24 H 0.269 0.731 25 C -0.033 4.033 26 N -0.169 5.169 27 C -0.193 4.193 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.131 0.869 38 H 0.051 0.949 39 H 0.129 0.871 40 H 0.112 0.888 41 H 0.222 0.778 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.578 -5.061 22.129 23.157 hybrid contribution 1.048 -0.593 0.837 1.466 sum -3.530 -5.654 22.965 23.913 Atomic orbital electron populations 1.22211 0.96703 1.01458 1.02330 1.21444 0.93643 0.84103 1.02720 1.48231 1.63774 1.13291 1.07493 1.19264 0.96188 0.93686 0.77982 1.21397 0.96927 1.31921 1.06283 0.92553 1.24924 0.97776 0.94937 0.96409 1.69920 1.35704 1.33379 1.14348 0.86576 0.84888 0.78208 0.77830 1.20286 1.21213 1.20199 1.20053 0.79076 0.87073 0.84790 1.90658 1.45184 1.17611 1.86777 1.22148 1.04505 0.93629 0.88494 1.58060 1.18794 1.39108 0.99512 1.22808 0.81016 1.01026 1.07268 1.19580 0.88267 0.85570 0.87883 1.68526 1.19800 1.10400 1.30941 1.24588 0.91130 0.97977 0.80657 1.67303 1.20713 1.07858 1.31375 1.18858 0.97157 0.91306 0.88147 1.42833 1.50352 1.16825 1.09834 0.73053 1.25610 0.96289 0.91918 0.89489 1.70371 1.19785 1.15349 1.11406 1.19669 1.09394 0.96246 0.93986 0.92121 0.92989 0.92093 0.89898 0.91663 0.94976 0.93838 0.92680 0.90379 0.86870 0.94868 0.87068 0.88849 0.77848 0.75632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.11 1.70 5.93 -4.05 -0.02 1.67 16 3 N -0.60 -12.61 2.46 -175.06 -0.43 -13.04 16 4 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 5 C -0.53 -14.86 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.50 10.65 7.36 -10.98 -0.08 10.57 16 14 O -0.53 -13.22 13.91 5.56 0.08 -13.15 16 15 C 0.04 0.69 3.28 -4.98 -0.02 0.67 16 16 N -0.44 -7.47 4.53 -182.04 -0.82 -8.30 16 17 C 0.02 0.38 8.94 60.06 0.54 0.92 16 18 C 0.44 6.65 6.42 -154.66 -0.99 5.65 16 19 N -0.57 -7.67 8.77 -13.61 -0.12 -7.79 16 20 C 0.35 3.85 12.25 -92.07 -1.13 2.72 16 21 N -0.55 -6.53 10.47 -13.90 -0.15 -6.67 16 22 C 0.29 3.46 8.51 -155.80 -1.33 2.13 16 23 N -0.58 -4.47 6.20 -13.25 -0.08 -4.55 16 24 H 0.43 1.70 8.96 -40.82 -0.37 1.33 16 25 C 0.26 1.98 12.98 -89.50 -1.16 0.82 16 26 N -0.45 -5.81 9.89 -11.85 -0.12 -5.92 16 27 C -0.07 -0.95 6.59 -84.55 -0.56 -1.51 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.70 7.22 -51.93 -0.38 0.33 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.07 0.89 6.44 -51.93 -0.33 0.56 16 33 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.08 1.18 7.38 -51.93 -0.38 0.80 16 37 H 0.11 1.74 6.59 -51.93 -0.34 1.40 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.11 2.12 5.83 -51.93 -0.30 1.81 16 40 H 0.09 1.47 6.38 -51.93 -0.33 1.14 16 41 H 0.21 1.41 8.06 -52.49 -0.42 0.98 16 42 H 0.23 0.54 8.06 -52.49 -0.42 0.11 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -36.96 351.89 -10.76 -47.71 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.32 Total: 0.86 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: -4.82 Total: 14.64 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -0.98 Total: -72.20 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.96 -10.76 -47.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439141399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.219 kcal (2) G-P(sol) polarization free energy of solvation -36.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds