Wall clock time and date at job start Fri Apr 10 2020 14:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47303 * 2 1 4 4 C 1.46502 * 119.99874 * 269.99998 * 3 2 1 5 5 C 1.50706 * 109.46890 * 269.99685 * 4 3 2 6 6 H 1.07998 * 119.99854 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99874 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00317 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99841 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47231 * 60.00035 * 9 7 5 11 11 H 1.48501 * 109.47387 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47311 * 300.00021 * 9 7 5 13 13 C 1.34783 * 120.00392 * 89.99452 * 3 2 1 14 14 O 1.21276 * 119.99983 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99606 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47047 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99968 * 293.95480 * 16 15 13 18 18 C 1.38388 * 111.00378 * 170.00068 * 16 15 13 19 19 N 1.32908 * 120.76768 * 359.97438 * 18 16 15 20 20 C 1.32050 * 121.18886 * 180.02562 * 19 18 16 21 21 N 1.31637 * 122.46204 * 0.21298 * 20 19 18 22 22 C 1.32893 * 120.64326 * 359.57828 * 21 20 19 23 23 N 1.37205 * 134.92277 * 180.09476 * 22 21 20 24 24 H 0.97000 * 126.27551 * 0.24363 * 23 22 21 25 25 C 1.36313 * 107.44444 * 180.28472 * 23 22 21 26 26 N 1.30139 * 109.97698 * 359.97438 * 25 23 22 27 27 C 1.35471 * 109.44251 * 0.02562 * 26 25 23 28 28 H 1.08996 * 109.47525 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47183 * 300.00465 * 1 2 3 30 30 H 1.09007 * 109.46691 * 60.00168 * 1 2 3 31 31 H 1.08998 * 109.47183 * 239.99534 * 2 1 3 32 32 H 1.09007 * 109.46691 * 119.99832 * 2 1 3 33 33 H 1.08995 * 109.47390 * 29.99644 * 4 3 2 34 34 H 1.09002 * 109.47206 * 150.00302 * 4 3 2 35 35 H 0.97004 * 120.00491 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47456 * 60.00135 * 15 13 3 37 37 H 1.08997 * 109.47150 * 299.99498 * 15 13 3 38 38 H 1.08997 * 109.47566 * 296.04084 * 17 16 15 39 39 H 1.09000 * 109.47215 * 56.04908 * 17 16 15 40 40 H 1.09004 * 109.47326 * 176.04134 * 17 16 15 41 41 H 1.07999 * 118.76778 * 179.97438 * 20 19 18 42 42 H 1.08002 * 125.01221 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1495 2.3903 -2.8774 8 7 3.3496 3.1263 -3.6176 9 14 5.9135 2.0962 -3.4169 10 1 6.1403 0.6394 -3.5952 11 1 6.1616 2.7972 -4.7023 12 1 6.8414 2.6184 -2.3817 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2060 3.5888 17 6 3.7475 2.5097 3.6267 18 6 1.8848 1.6728 4.7927 19 7 1.2747 0.4928 4.8358 20 6 0.8644 -0.0236 5.9798 21 7 1.0281 0.5919 7.1318 22 6 1.6315 1.7746 7.1882 23 7 1.9519 2.6519 8.1933 24 1 1.7697 2.5330 9.1386 25 6 2.5725 3.7214 7.6197 26 7 2.6509 3.5519 6.3318 27 6 2.0868 2.3664 5.9979 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 3.6757 3.5168 -4.4435 36 1 2.6227 0.4188 2.5300 37 1 0.9443 1.0116 2.5302 38 1 4.3073 1.5950 3.8214 39 1 4.0559 2.9275 2.6683 40 1 3.9454 3.2323 4.4185 41 1 0.3726 -0.9850 5.9694 42 1 2.9443 4.5826 8.1551 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439141399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:04 Heat of formation + Delta-G solvation = 66.618879 kcal Electronic energy + Delta-G solvation = -26699.109462 eV Core-core repulsion = 22908.405050 eV Total energy + Delta-G solvation = -3790.704412 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.62449 -41.24834 -40.23985 -38.32269 -36.87081 -34.90766 -34.28676 -33.16180 -31.67941 -31.12241 -30.08012 -28.47350 -27.05906 -25.04332 -24.80072 -24.28083 -23.50728 -22.44237 -20.26780 -19.79193 -18.98002 -18.60869 -18.28690 -17.64115 -17.17992 -17.12219 -16.58655 -16.39411 -15.81732 -15.68267 -15.53231 -15.11689 -14.86760 -14.66447 -14.41775 -14.29724 -14.08661 -13.61818 -13.31586 -13.17002 -13.10254 -12.83750 -12.65188 -12.60286 -12.56779 -12.42898 -12.12191 -11.83455 -11.70652 -11.49699 -10.90457 -10.62191 -10.59887 -10.31610 -10.21997 -9.42285 -9.17048 -8.20061 -6.34964 -0.39921 0.13188 1.37756 1.42228 1.49283 1.52257 1.75085 1.79389 1.94777 2.38114 2.54281 2.74900 3.04362 3.09489 3.21011 3.37774 3.61571 3.72990 4.00007 4.09837 4.18398 4.30626 4.31911 4.43208 4.47220 4.52505 4.66837 4.79539 4.94631 4.96577 5.02196 5.07971 5.21236 5.25789 5.33320 5.42168 5.60104 5.78969 5.83532 5.89054 6.08658 6.31943 6.70321 6.71696 6.79116 7.09318 7.29740 7.48024 8.86953 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.003217 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.716373 B = 8702.759640 C = 9566.830651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.600 5.600 4 C 0.265 3.735 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.497 3.503 14 O -0.576 6.576 15 C 0.064 3.936 16 N -0.464 5.464 17 C 0.037 3.963 18 C 0.410 3.590 19 N -0.575 5.575 20 C 0.341 3.659 21 N -0.548 5.548 22 C 0.278 3.722 23 N -0.566 5.566 24 H 0.449 0.551 25 C 0.289 3.711 26 N -0.507 5.507 27 C -0.088 4.088 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.023 0.977 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.244 0.756 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 -7.841 25.867 27.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.332 5.332 4 C 0.143 3.857 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.285 3.715 14 O -0.457 6.457 15 C -0.065 4.065 16 N -0.179 5.179 17 C -0.109 4.109 18 C 0.163 3.837 19 N -0.300 5.300 20 C 0.050 3.950 21 N -0.271 5.271 22 C 0.034 3.966 23 N -0.183 5.183 24 H 0.293 0.707 25 C 0.001 3.999 26 N -0.227 5.227 27 C -0.213 4.213 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.041 0.959 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.146 0.854 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.259 0.741 42 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -4.426 -6.975 24.943 26.275 hybrid contribution 0.942 0.028 0.159 0.956 sum -3.483 -6.947 25.102 26.278 Atomic orbital electron populations 1.22139 0.94612 1.03586 1.01461 1.21772 0.95338 0.81232 1.03992 1.48245 1.63844 1.15129 1.05980 1.18696 0.95369 0.91450 0.80138 1.21681 0.97794 1.32024 1.06554 0.92704 1.25857 1.02377 0.94461 0.96430 1.70050 1.37844 1.34199 1.14801 0.85477 0.79037 0.79021 0.77325 1.18406 1.20457 1.20271 1.20909 0.77772 0.86673 0.86155 1.90629 1.47311 1.20053 1.87657 1.21930 1.05557 0.93212 0.85810 1.58033 1.18978 1.40409 1.00445 1.22566 0.81683 1.01408 1.05203 1.19588 0.89821 0.86819 0.87521 1.68492 1.19528 1.09841 1.32139 1.25383 0.90794 0.98979 0.79826 1.67411 1.20347 1.07725 1.31621 1.19146 0.97122 0.91645 0.88734 1.42885 1.49385 1.15765 1.10270 0.70721 1.26703 0.92751 0.92108 0.88330 1.70358 1.22401 1.15781 1.14119 1.19860 1.10023 0.97095 0.94345 0.88396 0.92632 0.94191 0.90534 0.88406 0.95926 0.98639 0.92440 0.88601 0.85390 0.93701 0.90510 0.88638 0.74050 0.70418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 10.24 71.98 0.74 -3.45 16 2 C 0.10 3.12 5.93 86.38 0.51 3.63 16 3 N -0.60 -26.24 2.46 -826.16 -2.03 -28.27 16 4 C 0.26 14.61 5.16 85.63 0.44 15.06 16 5 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16 6 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -57.11 13.29 21.44 0.28 -56.83 16 9 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.50 21.78 7.36 87.65 0.65 22.43 16 14 O -0.58 -30.93 13.91 -3.02 -0.04 -30.97 16 15 C 0.06 2.11 3.28 85.56 0.28 2.39 16 16 N -0.46 -15.97 4.53 -729.84 -3.30 -19.28 16 17 C 0.04 1.24 8.94 127.69 1.14 2.39 16 18 C 0.41 12.29 6.42 133.46 0.86 13.15 16 19 N -0.58 -14.49 8.77 -196.97 -1.73 -16.22 16 20 C 0.34 6.72 12.25 180.85 2.22 8.94 16 21 N -0.55 -11.72 10.47 -197.89 -2.07 -13.79 16 22 C 0.28 6.09 8.51 133.86 1.14 7.23 16 23 N -0.57 -6.89 6.20 -195.84 -1.21 -8.10 16 24 H 0.45 1.86 8.96 -92.71 -0.83 1.03 16 25 C 0.29 3.58 12.98 179.96 2.34 5.91 16 26 N -0.51 -12.46 9.89 -191.40 -1.89 -14.35 16 27 C -0.09 -2.42 6.59 39.69 0.26 -2.16 16 28 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.05 1.42 7.22 -2.39 -0.02 1.40 16 30 H 0.04 1.20 8.14 -2.38 -0.02 1.19 16 31 H 0.08 2.51 8.07 -2.39 -0.02 2.49 16 32 H 0.10 2.45 6.44 -2.38 -0.02 2.44 16 33 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 34 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.10 2.77 7.38 -2.39 -0.02 2.76 16 37 H 0.13 3.80 6.59 -2.39 -0.02 3.79 16 38 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 3.13 5.83 -2.39 -0.01 3.11 16 40 H 0.10 3.13 6.38 -2.38 -0.02 3.11 16 41 H 0.24 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.28 -0.03 8.06 -2.91 -0.02 -0.05 16 Total: -1.00 -86.26 351.89 1.54 -84.71 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.24 Total: 10.68 kcal Atomic # 6 Polarization: 33.77 SS G_CDS: 11.27 Total: 45.04 kcal Atomic # 7 Polarization: -144.89 SS G_CDS: -11.95 Total: -156.84 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.04 Total: -30.97 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -86.26 1.54 -84.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439141399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.333 kcal (2) G-P(sol) polarization free energy of solvation -86.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds