Wall clock time and date at job start Fri Apr 10 2020 14:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46910 * 2 1 4 4 C 1.46498 * 119.99844 * 269.99810 * 3 2 1 5 5 C 1.50696 * 109.47001 * 269.99715 * 4 3 2 6 6 H 1.08001 * 120.00270 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99826 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00383 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99802 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47293 * 90.00666 * 9 7 5 11 11 H 1.48504 * 109.47234 * 210.00436 * 9 7 5 12 12 H 1.48496 * 109.47458 * 330.00239 * 9 7 5 13 13 C 1.34775 * 119.99814 * 89.99736 * 3 2 1 14 14 O 1.21283 * 120.00057 * 180.02562 * 13 3 2 15 15 C 1.50707 * 120.00208 * 0.02562 * 13 3 2 16 16 N 1.46498 * 109.47033 * 179.97438 * 15 13 3 17 17 C 1.35307 * 125.86697 * 125.00064 * 16 15 13 18 18 C 1.35353 * 106.17544 * 179.97438 * 17 16 15 19 19 C 1.50703 * 126.75029 * 180.02562 * 18 17 16 20 20 N 1.46506 * 109.46782 * 125.00078 * 19 18 17 21 21 C 1.34947 * 126.03702 * 125.00130 * 20 19 18 22 22 C 1.35307 * 107.74824 * 179.97438 * 21 20 19 23 23 C 1.39874 * 107.91884 * 359.97438 * 22 21 20 24 24 N 1.30836 * 108.20052 * 359.73989 * 23 22 21 25 25 N 1.33771 * 106.49690 * 0.26109 * 18 17 16 26 26 N 1.28640 * 108.88402 * 359.56082 * 25 18 17 27 27 H 1.09000 * 109.46983 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47041 * 300.00168 * 1 2 3 29 29 H 1.09004 * 109.46906 * 59.99838 * 1 2 3 30 30 H 1.08990 * 109.47207 * 240.00259 * 2 1 3 31 31 H 1.08992 * 109.46844 * 119.99758 * 2 1 3 32 32 H 1.08995 * 109.47282 * 30.00410 * 4 3 2 33 33 H 1.09007 * 109.46824 * 150.00087 * 4 3 2 34 34 H 0.96994 * 120.00607 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46638 * 59.99603 * 15 13 3 36 36 H 1.08997 * 109.47057 * 299.99762 * 15 13 3 37 37 H 1.08006 * 126.91419 * 0.02562 * 17 16 15 38 38 H 1.08999 * 109.47353 * 5.00030 * 19 18 17 39 39 H 1.09000 * 109.47019 * 244.99683 * 19 18 17 40 40 H 1.08007 * 126.12499 * 359.97438 * 21 20 19 41 41 H 1.07999 * 126.04459 * 180.02562 * 22 21 20 42 42 H 1.08001 * 125.89534 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3427 1.2304 -1.0960 7 6 4.1491 2.3897 -2.8779 8 7 3.3491 3.1257 -3.6181 9 14 5.9132 2.0957 -3.4173 10 1 5.9762 0.8746 -4.2600 11 1 6.3924 3.2628 -4.2006 12 1 6.7735 1.9160 -2.2204 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1603 1.1673 15 6 1.9922 1.3060 2.4724 16 7 2.3100 2.2034 3.5859 17 6 1.4759 2.5377 4.5975 18 6 2.1709 3.3809 5.3963 19 6 1.6792 4.0346 6.6620 20 7 2.5981 3.7248 7.7602 21 6 3.2172 4.6230 8.5546 22 6 3.9754 3.9365 9.4405 23 6 3.8135 2.5720 9.1790 24 7 2.9835 2.4438 8.1758 25 7 3.3783 3.5239 4.8384 26 7 3.4308 2.8089 3.7702 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5137 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6878 -2.0283 33 1 2.0955 3.1411 -1.1384 34 1 3.6751 3.5162 -4.4439 35 1 2.6228 0.4188 2.5298 36 1 0.9444 1.0114 2.5303 37 1 0.4602 2.1991 4.7396 38 1 0.6851 3.6581 6.9028 39 1 1.6343 5.1143 6.5195 40 1 3.1243 5.6973 8.4940 41 1 4.5952 4.3661 10.2136 42 1 4.2879 1.7638 9.7158 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603207959.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:55 Heat of formation + Delta-G solvation = 156.983878 kcal Electronic energy + Delta-G solvation = -25857.721502 eV Core-core repulsion = 22070.935611 eV Total energy + Delta-G solvation = -3786.785892 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.22326 -41.10232 -39.31270 -35.65196 -34.95621 -33.68549 -32.83721 -30.98601 -30.31641 -29.98077 -29.13378 -26.88751 -26.57066 -23.32758 -23.17084 -22.12830 -21.85360 -21.14651 -20.55278 -18.75048 -17.66772 -17.12023 -17.03586 -16.47342 -15.85569 -15.44594 -15.29563 -15.09220 -14.75085 -14.33438 -14.12633 -13.95976 -13.64947 -13.44588 -13.32092 -12.97398 -12.83400 -12.53892 -12.23696 -12.11846 -11.81338 -11.46169 -11.31397 -11.02224 -10.90652 -10.80574 -10.72412 -10.62893 -10.28090 -10.19838 -9.73110 -9.53604 -9.23857 -9.14164 -8.66655 -8.49596 -7.89307 -6.11062 -4.16100 1.58646 1.83043 2.18892 2.32334 2.80300 2.83056 3.01318 3.27605 3.35255 3.40600 3.62485 4.05435 4.38443 4.46946 4.57187 4.63147 4.67266 4.73886 4.84748 4.85569 4.96593 5.13479 5.24200 5.26807 5.39569 5.49123 5.53383 5.67755 5.75400 5.83187 5.92677 6.01171 6.04777 6.27579 6.51008 6.57598 6.87420 6.90682 7.27892 7.36125 7.64764 7.84340 8.11834 8.14500 8.62457 8.69076 8.89435 9.49508 10.97223 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.018623 B = 0.002728 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.185754 B =10261.514220 C =11110.753910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.590 5.590 4 C 0.249 3.751 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.494 3.506 14 O -0.510 6.510 15 C 0.091 3.909 16 N -0.272 5.272 17 C -0.032 4.032 18 C -0.049 4.049 19 C 0.229 3.771 20 N -0.364 5.364 21 C 0.060 3.940 22 C -0.278 4.278 23 C 0.040 3.960 24 N -0.288 5.288 25 N -0.258 5.258 26 N -0.038 5.038 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.190 0.810 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.173 0.827 41 H 0.145 0.855 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.285 -4.189 21.021 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.323 5.323 4 C 0.130 3.870 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.277 3.723 14 O -0.384 6.384 15 C -0.034 4.034 16 N -0.064 5.064 17 C -0.183 4.183 18 C -0.188 4.188 19 C 0.106 3.894 20 N -0.146 5.146 21 C -0.086 4.086 22 C -0.308 4.308 23 C -0.146 4.146 24 N -0.110 5.110 25 N -0.125 5.125 26 N -0.018 5.018 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.207 0.793 38 H 0.120 0.880 39 H 0.131 0.869 40 H 0.190 0.810 41 H 0.163 0.837 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.364 -4.008 19.347 21.455 hybrid contribution 0.260 0.056 0.291 0.394 sum -8.104 -3.952 19.637 21.608 Atomic orbital electron populations 1.22245 0.96439 1.01783 1.02428 1.21534 0.93718 0.83940 1.03210 1.48253 1.63441 1.13327 1.07265 1.19340 0.96618 0.93602 0.77440 1.21396 0.96764 1.32264 1.06373 0.92347 1.24925 0.97977 0.94746 0.96338 1.69918 1.35806 1.33259 1.14341 0.86481 0.84533 0.77704 0.78672 1.20596 1.21020 1.19745 1.19873 0.80357 0.87484 0.84609 1.90807 1.44037 1.17318 1.86243 1.22169 1.04673 0.92215 0.84336 1.46873 1.09882 1.31711 1.17977 1.23214 0.99828 1.03574 0.91723 1.21636 0.93573 1.03658 0.99910 1.19714 0.90841 1.00417 0.78441 1.48569 1.36404 1.04084 1.25536 1.22558 0.96289 0.96725 0.93015 1.21465 1.09391 0.93316 1.06587 1.23857 0.97602 0.97346 0.95822 1.77360 1.17803 1.00618 1.15191 1.75111 1.18229 1.16589 1.02587 1.78557 1.05461 1.05877 1.11945 0.91748 0.93280 0.91673 0.89200 0.91780 0.94615 0.93825 0.92621 0.85775 0.85374 0.79258 0.88012 0.86943 0.81001 0.83744 0.80377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.24 37.16 0.38 -1.46 16 2 C 0.10 1.36 5.93 -4.04 -0.02 1.33 16 3 N -0.59 -11.40 2.46 -175.06 -0.43 -11.83 16 4 C 0.25 6.22 5.16 -5.20 -0.03 6.19 16 5 C -0.53 -14.72 9.39 -34.44 -0.32 -15.05 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.49 9.61 7.69 -10.98 -0.08 9.53 16 14 O -0.51 -12.79 15.26 5.56 0.08 -12.71 16 15 C 0.09 1.21 5.49 -5.19 -0.03 1.18 16 16 N -0.27 -4.26 3.20 -62.44 -0.20 -4.46 16 17 C -0.03 -0.39 11.49 -17.05 -0.20 -0.58 16 18 C -0.05 -0.68 6.69 -82.77 -0.55 -1.23 16 19 C 0.23 2.19 7.08 -5.19 -0.04 2.16 16 20 N -0.36 -4.23 3.67 -62.54 -0.23 -4.46 16 21 C 0.06 0.59 11.45 -17.23 -0.20 0.39 16 22 C -0.28 -2.76 10.80 -40.01 -0.43 -3.19 16 23 C 0.04 0.45 12.03 -17.36 -0.21 0.24 16 24 N -0.29 -3.90 12.41 30.63 0.38 -3.52 16 25 N -0.26 -4.76 12.41 33.29 0.41 -4.35 16 26 N -0.04 -0.76 12.13 60.35 0.73 -0.03 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.46 7.22 -51.93 -0.38 0.09 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.06 0.66 6.44 -51.93 -0.33 0.33 16 32 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.04 1.25 7.42 -51.92 -0.39 0.87 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.12 1.40 7.40 -51.93 -0.38 1.01 16 36 H 0.13 1.10 7.11 -51.93 -0.37 0.73 16 37 H 0.19 1.34 8.06 -52.48 -0.42 0.91 16 38 H 0.10 0.66 8.12 -51.93 -0.42 0.24 16 39 H 0.11 0.81 8.07 -51.93 -0.42 0.39 16 40 H 0.17 1.09 8.06 -52.48 -0.42 0.66 16 41 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -39.82 367.13 -5.44 -45.26 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.61 Total: -1.96 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.83 Total: 1.18 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 1.40 Total: -54.21 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -39.82 -5.44 -45.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603207959.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.245 kcal (2) G-P(sol) polarization free energy of solvation -39.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds