Wall clock time and date at job start Fri Apr 10 2020 14:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 N 1.46502 * 109.47016 * 180.02562 * 8 7 6 10 10 C 1.34774 * 119.99395 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00814 * 359.97438 * 10 9 8 12 12 N 1.34785 * 119.99449 * 179.97438 * 10 9 8 13 13 C 1.40202 * 119.99532 * 179.97438 * 12 10 9 14 14 C 1.40398 * 125.97373 * 359.71711 * 13 12 10 15 15 C 1.35248 * 107.86262 * 179.82738 * 14 13 12 16 16 N 1.34957 * 107.86190 * 0.42589 * 15 14 13 17 17 C 1.46501 * 125.97864 * 179.70718 * 16 15 14 18 18 C 1.50692 * 109.47129 * 125.00271 * 17 16 15 19 19 H 1.08005 * 120.00187 * 0.02562 * 18 17 16 20 20 C 1.37884 * 120.00241 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99594 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00201 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47342 * 90.00015 * 22 20 18 24 24 H 1.48504 * 109.47092 * 210.00234 * 22 20 18 25 25 H 1.48502 * 109.47396 * 329.99610 * 22 20 18 26 26 N 1.31212 * 125.96539 * 180.02562 * 13 12 10 27 27 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 28 28 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 29 29 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 30 30 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 31 31 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 32 32 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 33 33 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 34 34 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 35 35 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 36 36 H 0.96995 * 120.00113 * 359.97438 * 9 8 7 37 37 H 0.96995 * 120.00059 * 359.97438 * 12 10 9 38 38 H 1.07997 * 126.06828 * 359.97438 * 14 13 12 39 39 H 1.08003 * 126.06821 * 180.13804 * 15 14 13 40 40 H 1.09002 * 109.46959 * 245.00180 * 17 16 15 41 41 H 1.08996 * 109.46678 * 5.00186 * 17 16 15 42 42 H 0.96998 * 119.99490 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 7 1.3134 -4.4448 1.4362 10 6 1.2038 -5.1175 2.5989 11 8 1.4771 -4.5669 3.6480 12 7 0.7912 -6.4006 2.5988 13 6 0.6777 -7.1005 3.8083 14 6 0.9648 -6.5924 5.0852 15 6 0.7261 -7.5732 5.9853 16 7 0.3131 -8.6650 5.3080 17 6 -0.0475 -9.9574 5.8962 18 6 -1.4375 -10.3390 5.4569 19 1 -1.9964 -9.6845 4.8044 20 6 -1.9956 -11.5242 5.8871 21 7 -1.3148 -12.3214 6.6813 22 14 -3.7189 -11.9968 5.3431 23 1 -3.6433 -12.7779 4.0825 24 1 -4.3625 -12.8204 6.3980 25 1 -4.5211 -10.7678 5.1166 26 7 0.2900 -8.3466 3.9441 27 1 -0.3634 -0.0005 1.0276 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5143 30 1 4.4053 1.3713 0.0112 31 1 4.4212 -1.2961 -0.0013 32 1 0.7995 -2.5863 -0.4346 33 1 2.4874 -3.1293 -0.5903 34 1 2.7594 -2.9894 1.8704 35 1 1.0715 -2.4464 2.0262 36 1 1.0950 -4.8839 0.5994 37 1 0.5727 -6.8397 1.7620 38 1 1.3121 -5.5946 5.3092 39 1 0.8492 -7.4978 7.0556 40 1 0.6599 -10.7175 5.5646 41 1 -0.0176 -9.8828 6.9832 42 1 -1.7072 -13.1554 6.9836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762853758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:13 Heat of formation + Delta-G solvation = 135.043212 kcal Electronic energy + Delta-G solvation = -24778.854017 eV Core-core repulsion = 20991.116707 eV Total energy + Delta-G solvation = -3787.737310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61840 -40.72218 -39.58414 -36.04133 -34.66503 -33.71525 -33.36210 -32.45134 -30.84150 -29.30686 -28.57641 -27.10147 -26.59505 -24.15644 -22.94216 -21.67548 -21.50714 -20.56853 -20.13455 -19.70901 -18.05556 -17.07162 -16.79705 -16.57491 -16.05738 -15.89969 -15.55348 -14.93786 -14.88662 -14.52627 -14.37923 -14.15577 -13.99731 -13.73359 -13.18889 -12.95309 -12.80654 -12.74219 -12.44664 -12.34874 -12.22509 -11.94962 -11.72379 -11.04983 -10.98276 -10.90040 -10.43845 -10.26323 -10.11672 -9.72063 -9.65095 -9.50569 -9.32718 -8.88778 -8.63528 -8.10662 -7.42081 -6.24480 -4.29435 1.44035 2.11200 2.33602 2.51761 2.65178 3.09707 3.23057 3.28844 3.33633 3.55785 3.82685 4.10908 4.17170 4.30141 4.38131 4.39898 4.46181 4.73281 4.80331 4.95975 5.05498 5.10579 5.22937 5.37954 5.43255 5.46109 5.59824 5.79821 5.80372 6.12730 6.25309 6.29929 6.53091 6.55260 6.60989 6.86669 6.99581 7.09685 7.34700 7.48525 7.69265 7.81264 7.95713 8.06669 8.54804 8.65908 8.80653 9.36026 10.84187 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.029989 B = 0.001912 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.442327 B =14638.533921 C =15130.842159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.370 5.370 3 N -0.298 5.298 4 C 0.046 3.954 5 C -0.266 4.266 6 C 0.087 3.913 7 C -0.069 4.069 8 C 0.148 3.852 9 N -0.746 5.746 10 C 0.714 3.286 11 O -0.565 6.565 12 N -0.643 5.643 13 C 0.275 3.725 14 C -0.286 4.286 15 C 0.051 3.949 16 N -0.320 5.320 17 C 0.258 3.742 18 C -0.528 4.528 19 H 0.069 0.931 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.908 3.092 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.273 1.273 26 N -0.308 5.308 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.184 0.816 31 H 0.149 0.851 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.407 0.593 38 H 0.161 0.839 39 H 0.168 0.832 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.906 21.259 -15.083 26.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.153 5.153 3 N -0.119 5.119 4 C -0.139 4.139 5 C -0.295 4.295 6 C -0.041 4.041 7 C -0.109 4.109 8 C 0.023 3.977 9 N -0.403 5.403 10 C 0.413 3.587 11 O -0.440 6.440 12 N -0.293 5.293 13 C 0.021 3.979 14 C -0.318 4.318 15 C -0.099 4.099 16 N -0.102 5.102 17 C 0.141 3.859 18 C -0.566 4.566 19 H 0.087 0.913 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.735 3.265 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.198 1.198 26 N -0.139 5.139 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.201 0.799 31 H 0.167 0.833 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.231 0.769 37 H 0.241 0.759 38 H 0.178 0.822 39 H 0.185 0.815 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.778 21.464 -14.550 26.567 hybrid contribution -0.356 -0.801 -0.630 1.080 sum 5.423 20.663 -15.180 26.206 Atomic orbital electron populations 1.21901 0.74321 1.04491 1.03792 1.48524 1.06600 1.03378 1.56779 1.77401 1.01961 1.07789 1.24733 1.23862 0.95232 0.95130 0.99682 1.21306 0.96284 0.95139 1.16793 1.20720 0.91403 0.89734 1.02229 1.20422 1.03164 0.89483 0.97798 1.21067 1.01272 0.80277 0.95069 1.44947 1.74065 1.13620 1.07716 1.15582 0.78510 0.80476 0.84173 1.90886 1.55386 1.67968 1.29789 1.41360 1.69529 1.10869 1.07520 1.18776 1.01953 0.91450 0.85737 1.21510 1.18050 1.02544 0.89692 1.22558 1.00593 0.87699 0.99022 1.49054 1.47161 1.12046 1.01945 1.19737 0.97332 0.75342 0.93506 1.21259 0.98987 1.05616 1.30766 0.91323 1.24952 0.98654 0.95777 0.94755 1.69921 1.37817 1.11996 1.33605 0.86322 0.83256 0.78533 0.78341 1.20365 1.20995 1.19756 1.77321 1.27075 1.12014 0.97462 0.90377 0.89172 0.89423 0.79913 0.83309 0.89880 0.88193 0.90561 0.91408 0.76862 0.75864 0.82212 0.81518 0.93739 0.92522 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.27 59.85 0.67 1.17 16 2 N -0.37 -3.15 4.01 -63.89 -0.26 -3.40 16 3 N -0.30 -3.08 12.58 30.63 0.39 -2.70 16 4 C 0.05 0.39 12.03 -17.36 -0.21 0.18 16 5 C -0.27 -2.08 10.72 -40.01 -0.43 -2.50 16 6 C 0.09 0.66 6.19 -82.27 -0.51 0.15 16 7 C -0.07 -0.34 5.61 -27.88 -0.16 -0.50 16 8 C 0.15 1.15 5.66 -4.04 -0.02 1.13 16 9 N -0.75 -6.42 5.56 -65.22 -0.36 -6.78 16 10 C 0.71 9.96 8.53 -86.91 -0.74 9.21 16 11 O -0.57 -10.02 13.47 5.28 0.07 -9.95 16 12 N -0.64 -9.58 5.46 -15.50 -0.08 -9.67 16 13 C 0.27 5.47 8.11 -154.36 -1.25 4.21 16 14 C -0.29 -5.71 9.61 -39.83 -0.38 -6.09 16 15 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 16 N -0.32 -7.42 3.67 -62.56 -0.23 -7.65 16 17 C 0.26 6.54 6.26 -5.20 -0.03 6.51 16 18 C -0.53 -14.62 9.24 -34.44 -0.32 -14.94 16 19 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 22 Si 0.91 21.24 29.54 -169.99 -5.02 16.21 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 N -0.31 -7.01 12.42 31.44 0.39 -6.62 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.26 6.98 -51.92 -0.36 -0.11 16 30 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 31 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.08 0.29 6.95 -51.93 -0.36 -0.08 16 33 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 2.09 8.49 -40.82 -0.35 1.74 16 37 H 0.41 4.75 8.84 -40.82 -0.36 4.39 16 38 H 0.16 3.14 5.91 -52.49 -0.31 2.83 16 39 H 0.17 2.73 8.06 -52.48 -0.42 2.31 16 40 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -36.12 365.79 -8.04 -44.16 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.51 Total: 4.42 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -3.67 Total: 0.95 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 0.58 Total: -61.31 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.12 -8.04 -44.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762853758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.208 kcal (2) G-P(sol) polarization free energy of solvation -36.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds