Wall clock time and date at job start Fri Apr 10 2020 14:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40084 * 126.03058 * 2 1 4 4 C 1.30842 * 108.20250 * 179.73948 * 3 2 1 5 5 C 1.39868 * 108.20327 * 0.44521 * 4 3 2 6 6 C 1.34941 * 126.04014 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.13067 * 359.97438 * 6 2 1 8 8 C 1.53005 * 109.47260 * 265.00771 * 7 6 2 9 9 N 1.46502 * 109.47016 * 180.02562 * 8 7 6 10 10 C 1.34774 * 119.99395 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00814 * 359.97438 * 10 9 8 12 12 N 1.34785 * 119.99449 * 179.97438 * 10 9 8 13 13 C 1.40202 * 119.99532 * 179.97438 * 12 10 9 14 14 C 1.40398 * 125.97373 * 359.71711 * 13 12 10 15 15 C 1.35248 * 107.86262 * 179.82738 * 14 13 12 16 16 N 1.34957 * 107.86190 * 0.42589 * 15 14 13 17 17 C 1.46501 * 125.97864 * 179.70718 * 16 15 14 18 18 C 1.50692 * 109.47129 * 125.00271 * 17 16 15 19 19 H 1.08005 * 120.00187 * 0.02562 * 18 17 16 20 20 C 1.37884 * 120.00241 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99594 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00201 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47342 * 90.00015 * 22 20 18 24 24 H 1.48504 * 109.47092 * 210.00234 * 22 20 18 25 25 H 1.48502 * 109.47396 * 329.99610 * 22 20 18 26 26 N 1.31212 * 125.96539 * 180.02562 * 13 12 10 27 27 H 1.08994 * 109.47427 * 269.96961 * 1 2 3 28 28 H 1.08999 * 109.47247 * 29.97548 * 1 2 3 29 29 H 1.09007 * 109.46720 * 149.97509 * 1 2 3 30 30 H 1.08007 * 125.90122 * 180.26287 * 4 3 2 31 31 H 1.08002 * 126.04477 * 179.82088 * 5 4 3 32 32 H 1.09002 * 109.46733 * 25.00405 * 7 6 2 33 33 H 1.08998 * 109.47609 * 145.00695 * 7 6 2 34 34 H 1.09002 * 109.46948 * 299.99502 * 8 7 6 35 35 H 1.08995 * 109.47549 * 59.99195 * 8 7 6 36 36 H 0.96995 * 120.00113 * 359.97438 * 9 8 7 37 37 H 0.96995 * 120.00059 * 359.97438 * 12 10 9 38 38 H 1.07997 * 126.06828 * 359.97438 * 14 13 12 39 39 H 1.08003 * 126.06821 * 180.13804 * 15 14 13 40 40 H 1.09002 * 109.46959 * 245.00180 * 17 16 15 41 41 H 1.08996 * 109.46678 * 5.00186 * 17 16 15 42 42 H 0.96998 * 119.99490 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 0.0057 5 6 3.5438 -0.6663 -0.0009 6 6 2.2589 -1.0911 -0.0005 7 6 1.7975 -2.5257 -0.0006 8 6 1.7614 -3.0500 1.4364 9 7 1.3134 -4.4448 1.4362 10 6 1.2038 -5.1175 2.5989 11 8 1.4771 -4.5669 3.6480 12 7 0.7912 -6.4006 2.5988 13 6 0.6777 -7.1005 3.8083 14 6 0.9648 -6.5924 5.0852 15 6 0.7261 -7.5732 5.9853 16 7 0.3131 -8.6650 5.3080 17 6 -0.0475 -9.9574 5.8962 18 6 -1.4375 -10.3390 5.4569 19 1 -1.9964 -9.6845 4.8044 20 6 -1.9956 -11.5242 5.8871 21 7 -1.3148 -12.3214 6.6813 22 14 -3.7189 -11.9968 5.3431 23 1 -3.6433 -12.7779 4.0825 24 1 -4.3625 -12.8204 6.3980 25 1 -4.5211 -10.7678 5.1166 26 7 0.2900 -8.3466 3.9441 27 1 -0.3634 -0.0005 1.0276 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5143 30 1 4.4053 1.3713 0.0112 31 1 4.4212 -1.2961 -0.0013 32 1 0.7995 -2.5863 -0.4346 33 1 2.4874 -3.1293 -0.5903 34 1 2.7594 -2.9894 1.8704 35 1 1.0715 -2.4464 2.0262 36 1 1.0950 -4.8839 0.5994 37 1 0.5727 -6.8397 1.7620 38 1 1.3121 -5.5946 5.3092 39 1 0.8492 -7.4978 7.0556 40 1 0.6599 -10.7175 5.5646 41 1 -0.0176 -9.8828 6.9832 42 1 -1.7072 -13.1554 6.9836 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762853758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:12 Heat of formation + Delta-G solvation = 109.574110 kcal Electronic energy + Delta-G solvation = -24779.958441 eV Core-core repulsion = 20991.116707 eV Total energy + Delta-G solvation = -3788.841733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24105 -42.13136 -40.84877 -36.91251 -36.06640 -35.26266 -34.25916 -33.30019 -32.44115 -30.91643 -29.36593 -28.38273 -27.56228 -25.29925 -24.41708 -22.86162 -22.08456 -21.95639 -21.36017 -20.57945 -19.15467 -18.67560 -18.21343 -17.62776 -17.20972 -16.90176 -16.49313 -16.26487 -15.97978 -15.68333 -15.40872 -15.33580 -15.03592 -14.50271 -14.44573 -14.20927 -13.78290 -13.67993 -13.64547 -13.45026 -13.21688 -12.99008 -12.92882 -12.72630 -12.42175 -12.27336 -12.03076 -11.63929 -11.56300 -11.38122 -11.13146 -10.70819 -10.25236 -10.22802 -9.70310 -9.45951 -9.03358 -8.31241 -6.45379 0.83296 1.09911 1.18038 1.39511 1.40089 1.51577 1.66879 1.72284 1.89924 2.14544 2.37405 2.43214 3.00225 3.14476 3.70297 3.76796 3.92233 3.97772 4.00809 4.30402 4.35768 4.37600 4.51298 4.66235 4.67612 4.78074 4.84130 4.90777 4.91780 4.96498 4.99077 5.05378 5.15971 5.28013 5.43149 5.58430 5.75225 5.78857 5.90653 5.99924 6.12473 6.31031 6.65437 6.76296 6.79203 7.17801 7.24435 7.45327 8.76116 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.029989 B = 0.001912 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.442327 B =14638.533921 C =15130.842159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.378 5.378 3 N -0.340 5.340 4 C 0.037 3.963 5 C -0.280 4.280 6 C 0.084 3.916 7 C -0.056 4.056 8 C 0.151 3.849 9 N -0.718 5.718 10 C 0.711 3.289 11 O -0.604 6.604 12 N -0.634 5.634 13 C 0.285 3.715 14 C -0.294 4.294 15 C 0.055 3.945 16 N -0.345 5.345 17 C 0.272 3.728 18 C -0.546 4.546 19 H 0.053 0.947 20 C 0.017 3.983 21 N -0.921 5.921 22 Si 0.973 3.027 23 H -0.272 1.272 24 H -0.273 1.273 25 H -0.272 1.272 26 N -0.347 5.347 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.204 0.796 31 H 0.164 0.836 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.418 0.582 37 H 0.422 0.578 38 H 0.166 0.834 39 H 0.199 0.801 40 H 0.022 0.978 41 H 0.058 0.942 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.315 21.583 -16.560 27.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.161 5.161 3 N -0.162 5.162 4 C -0.148 4.148 5 C -0.310 4.310 6 C -0.045 4.045 7 C -0.095 4.095 8 C 0.027 3.973 9 N -0.376 5.376 10 C 0.411 3.589 11 O -0.482 6.482 12 N -0.287 5.287 13 C 0.029 3.971 14 C -0.325 4.325 15 C -0.093 4.093 16 N -0.127 5.127 17 C 0.153 3.847 18 C -0.584 4.584 19 H 0.071 0.929 20 C -0.183 4.183 21 N -0.559 5.559 22 Si 0.797 3.203 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.197 1.197 26 N -0.178 5.178 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.221 0.779 31 H 0.182 0.818 32 H 0.125 0.875 33 H 0.140 0.860 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.256 0.744 37 H 0.260 0.740 38 H 0.183 0.817 39 H 0.216 0.784 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.192 21.816 -16.100 27.606 hybrid contribution -0.096 -0.768 -0.214 0.803 sum 5.096 21.048 -16.314 27.113 Atomic orbital electron populations 1.22157 0.72914 1.05961 1.04268 1.48811 1.07592 1.03197 1.56538 1.77333 1.03014 1.09416 1.26454 1.24328 0.95437 0.96041 0.98945 1.21641 0.97192 0.95160 1.16973 1.21114 0.91407 0.90561 1.01436 1.20393 1.05156 0.87942 0.95974 1.21072 1.00112 0.79247 0.96903 1.44720 1.72290 1.13616 1.06952 1.15778 0.78122 0.80024 0.85017 1.90858 1.56982 1.68610 1.31712 1.41345 1.69495 1.11137 1.06682 1.19075 0.99732 0.90740 0.87516 1.21679 1.18242 1.02661 0.89910 1.23144 0.98923 0.86595 1.00640 1.48809 1.49240 1.12097 1.02575 1.19333 0.95773 0.76142 0.93412 1.21405 1.00082 1.05965 1.30995 0.92876 1.25754 1.02450 0.95511 0.94601 1.70000 1.39405 1.12372 1.34168 0.85334 0.78540 0.78182 0.78267 1.19741 1.19827 1.19721 1.77241 1.29310 1.13634 0.97576 0.90368 0.88937 0.86823 0.77943 0.81808 0.87548 0.85983 0.91788 0.92747 0.74390 0.73996 0.81716 0.78374 0.96036 0.92435 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.27 127.77 1.44 2.21 16 2 N -0.38 -5.99 4.01 -356.04 -1.43 -7.42 16 3 N -0.34 -6.95 12.58 -57.02 -0.72 -7.67 16 4 C 0.04 0.60 12.03 85.23 1.02 1.62 16 5 C -0.28 -3.99 10.72 21.99 0.24 -3.75 16 6 C 0.08 1.10 6.19 41.41 0.26 1.36 16 7 C -0.06 -0.37 5.61 29.85 0.17 -0.20 16 8 C 0.15 2.01 5.66 86.38 0.49 2.50 16 9 N -0.72 -10.37 5.56 -478.52 -2.66 -13.03 16 10 C 0.71 18.60 8.53 179.05 1.53 20.12 16 11 O -0.60 -20.82 13.47 -4.01 -0.05 -20.87 16 12 N -0.63 -17.94 5.46 -321.22 -1.75 -19.70 16 13 C 0.29 11.17 8.11 133.31 1.08 12.25 16 14 C -0.29 -11.53 9.61 22.11 0.21 -11.31 16 15 C 0.06 2.20 11.44 83.52 0.96 3.15 16 16 N -0.35 -16.16 3.67 -351.85 -1.29 -17.45 16 17 C 0.27 14.08 6.26 85.63 0.54 14.62 16 18 C -0.55 -30.64 9.24 25.60 0.24 -30.41 16 19 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 20 C 0.02 0.94 5.46 84.66 0.46 1.40 16 21 N -0.92 -51.95 13.29 21.45 0.28 -51.67 16 22 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 26 N -0.35 -15.87 12.42 -54.43 -0.68 -16.55 16 27 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.11 0.35 6.98 -2.38 -0.02 0.33 16 30 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 31 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.11 0.27 6.95 -2.39 -0.02 0.25 16 33 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.42 2.80 8.49 -92.71 -0.79 2.02 16 37 H 0.42 9.01 8.84 -92.71 -0.82 8.19 16 38 H 0.17 6.36 5.91 -2.91 -0.02 6.34 16 39 H 0.20 6.24 8.06 -2.91 -0.02 6.22 16 40 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 2.91 8.07 -2.39 -0.02 2.89 16 42 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -79.20 365.79 1.82 -77.38 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -0.54 Total: 18.15 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 8.62 Total: 13.56 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -8.24 Total: -133.48 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.05 Total: -20.87 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -79.20 1.82 -77.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762853758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.954 kcal (2) G-P(sol) polarization free energy of solvation -79.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds