Wall clock time and date at job start Fri Apr 10 2020 14:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34821 * 125.89007 * 2 1 4 4 C 1.36478 * 107.60075 * 180.26575 * 3 2 1 5 5 C 1.48380 * 126.22939 * 180.02562 * 4 3 2 6 6 N 1.31339 * 126.51094 * 325.00210 * 5 4 3 7 7 N 1.39767 * 109.09261 * 179.97438 * 6 5 4 8 8 H 0.97001 * 125.15416 * 180.02562 * 7 6 5 9 9 C 1.34092 * 109.68590 * 359.97438 * 7 6 5 10 10 C 1.38030 * 107.87801 * 359.72289 * 9 7 6 11 11 C 1.47242 * 126.82065 * 180.29458 * 10 9 7 12 12 O 1.21619 * 120.00608 * 180.15895 * 11 10 9 13 13 N 1.34785 * 119.99774 * 0.15653 * 11 10 9 14 14 C 1.46496 * 119.99925 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47180 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47489 * 179.97438 * 15 14 13 17 17 N 1.46495 * 109.47181 * 179.97438 * 16 15 14 18 18 C 1.36939 * 119.99870 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99964 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99822 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00349 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99805 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47027 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46992 * 120.00118 * 22 20 18 25 25 H 1.48503 * 109.47288 * 240.00062 * 22 20 18 26 26 C 1.40880 * 107.54644 * 359.97438 * 4 3 2 27 27 N 1.30663 * 108.09219 * 0.02562 * 26 4 3 28 28 H 1.08998 * 109.47415 * 269.71869 * 1 2 3 29 29 H 1.09008 * 109.47019 * 29.71509 * 1 2 3 30 30 H 1.09002 * 109.47658 * 149.71252 * 1 2 3 31 31 H 1.07998 * 126.19792 * 0.24390 * 3 2 1 32 32 H 1.08010 * 126.06417 * 180.02562 * 9 7 6 33 33 H 0.97003 * 119.99546 * 0.02562 * 13 11 10 34 34 H 1.09006 * 109.47069 * 299.99746 * 14 13 11 35 35 H 1.08991 * 109.47660 * 59.99845 * 14 13 11 36 36 H 1.09006 * 109.46752 * 299.99744 * 15 14 13 37 37 H 1.08997 * 109.47462 * 59.99033 * 15 14 13 38 38 H 1.08998 * 109.47001 * 300.00101 * 16 15 14 39 39 H 1.09002 * 109.46896 * 59.99398 * 16 15 14 40 40 H 0.96997 * 120.00282 * 359.97438 * 17 16 15 41 41 H 0.96995 * 120.00038 * 180.02562 * 21 20 18 42 42 H 1.07999 * 125.95890 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2553 1.0922 0.0000 4 6 3.5511 0.6640 -0.0060 5 6 4.7594 1.5252 -0.0077 6 7 4.8916 2.6849 -0.6100 7 7 6.1772 3.1793 -0.3726 8 1 6.5227 4.0210 -0.7090 9 6 6.8599 2.3144 0.3914 10 6 6.0296 1.2473 0.6690 11 6 6.3561 0.0629 1.4806 12 8 5.5257 -0.8106 1.6434 13 7 7.5754 -0.0532 2.0433 14 6 7.9005 -1.2317 2.8503 15 6 9.3354 -1.1152 3.3683 16 6 9.6747 -2.3458 4.2118 17 7 11.0489 -2.2344 4.7072 18 6 11.5770 -3.2262 5.4899 19 1 10.9803 -4.0903 5.7423 20 6 12.8792 -3.1209 5.9589 21 7 13.6063 -2.0677 5.6517 22 14 13.5994 -4.4736 7.0273 23 1 12.5854 -5.5401 7.2259 24 1 14.7960 -5.0469 6.3603 25 1 13.9895 -3.9092 8.3443 26 6 3.5329 -0.7447 -0.0092 27 7 2.2857 -1.1344 -0.0058 28 1 -0.3634 -0.0050 1.0276 29 1 -0.3633 0.8926 -0.5094 30 1 -0.3634 -0.8874 -0.5183 31 1 1.9232 2.1199 0.0037 32 1 7.8774 2.4340 0.7335 33 1 8.2376 0.6437 1.9137 34 1 7.2138 -1.2946 3.6946 35 1 7.8065 -2.1286 2.2382 36 1 10.0223 -1.0521 2.5243 37 1 9.4290 -0.2184 3.9806 38 1 8.9878 -2.4085 5.0557 39 1 9.5810 -3.2428 3.5997 40 1 11.5849 -1.4586 4.4801 41 1 14.5164 -1.9943 5.9791 42 1 4.3988 -1.3902 -0.0137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170802230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:50 Heat of formation + Delta-G solvation = 95.482004 kcal Electronic energy + Delta-G solvation = -24883.429087 eV Core-core repulsion = 21093.976274 eV Total energy + Delta-G solvation = -3789.452813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.33636 -41.64563 -40.05576 -37.41004 -35.81795 -34.45765 -33.74240 -33.08113 -31.92279 -30.53238 -30.44171 -27.67600 -26.91968 -24.78230 -23.60072 -23.39044 -22.51254 -22.06133 -20.77472 -20.40491 -19.49570 -18.99801 -17.68792 -17.28946 -16.91819 -16.73609 -16.36421 -16.31137 -15.85139 -15.60513 -15.29078 -15.14176 -15.07097 -14.99669 -14.48612 -13.91898 -13.80387 -13.65382 -13.45947 -13.27029 -13.17962 -12.82729 -12.53274 -12.35709 -12.01729 -11.98493 -11.97069 -11.79105 -11.76488 -11.02493 -10.93331 -10.84091 -10.33718 -10.06895 -9.71584 -9.10305 -8.98957 -7.95132 -5.23534 0.58142 0.64174 1.13015 1.49190 1.49437 1.59933 1.62124 1.86885 2.07585 2.34461 2.58371 2.58871 3.38886 3.43034 3.64023 3.83984 3.92091 3.96916 4.17590 4.29730 4.33922 4.38077 4.41283 4.46771 4.54231 4.60725 4.71436 4.76658 4.81691 4.81819 4.97569 4.99047 5.32283 5.36564 5.38457 5.51545 5.54968 5.65529 6.07955 6.28332 6.33542 6.52587 6.71171 6.78669 7.34782 7.44878 8.10089 8.34163 9.28494 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.021452 B = 0.002045 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.932915 B =13685.772713 C =14870.186772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.375 5.375 3 C 0.099 3.901 4 C -0.203 4.203 5 C 0.204 3.796 6 N -0.314 5.314 7 N -0.449 5.449 8 H 0.461 0.539 9 C 0.143 3.857 10 C -0.319 4.319 11 C 0.589 3.411 12 O -0.578 6.578 13 N -0.714 5.714 14 C 0.138 3.862 15 C -0.117 4.117 16 C 0.150 3.850 17 N -0.746 5.746 18 C -0.247 4.247 19 H 0.074 0.926 20 C -0.076 4.076 21 N -0.967 5.967 22 Si 0.973 3.027 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.101 3.899 27 N -0.340 5.340 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.210 0.790 32 H 0.235 0.765 33 H 0.412 0.588 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.020 0.980 39 H 0.021 0.979 40 H 0.376 0.624 41 H 0.252 0.748 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.977 15.942 -15.931 32.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.156 5.156 3 C -0.052 4.052 4 C -0.217 4.217 5 C 0.035 3.965 6 N -0.136 5.136 7 N -0.155 5.155 8 H 0.309 0.691 9 C -0.010 4.010 10 C -0.335 4.335 11 C 0.378 3.622 12 O -0.458 6.458 13 N -0.366 5.366 14 C 0.013 3.987 15 C -0.155 4.155 16 C 0.024 3.976 17 N -0.389 5.389 18 C -0.379 4.379 19 H 0.092 0.908 20 C -0.268 4.268 21 N -0.618 5.618 22 Si 0.802 3.198 23 H -0.193 1.193 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.086 4.086 27 N -0.161 5.161 28 H 0.104 0.896 29 H 0.139 0.861 30 H 0.110 0.890 31 H 0.227 0.773 32 H 0.251 0.749 33 H 0.249 0.751 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.209 0.791 41 H 0.061 0.939 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -25.133 15.023 -16.450 33.585 hybrid contribution 2.350 0.172 0.980 2.552 sum -22.783 15.196 -15.470 31.453 Atomic orbital electron populations 1.22274 0.71414 1.06333 1.04786 1.48780 1.08226 1.03107 1.55447 1.22969 0.89642 0.94577 0.98011 1.17865 0.90591 0.91935 1.21284 1.20943 0.91911 0.90999 0.92696 1.77262 0.99013 1.12578 1.24715 1.45944 1.09099 1.20268 1.40212 0.69057 1.23638 0.99109 0.87892 0.90358 1.21232 0.96581 1.00712 1.14947 1.17445 0.81444 0.85043 0.78255 1.90737 1.48919 1.43257 1.62915 1.45659 1.14604 1.23995 1.52379 1.21018 0.95123 0.88149 0.94406 1.21689 0.95217 0.98595 0.99977 1.20692 0.85469 0.96341 0.95143 1.42538 1.11568 1.24047 1.60740 1.19682 0.96124 0.99741 1.22354 0.90828 1.25563 0.97478 1.00471 1.03280 1.69802 1.09657 1.30847 1.51513 0.85076 0.78054 0.78725 0.77920 1.19267 1.21896 1.21899 1.24054 0.94694 0.94455 0.95399 1.77271 1.02198 1.09522 1.27154 0.89585 0.86083 0.88951 0.77301 0.74912 0.75074 0.92405 0.92096 0.90501 0.90612 0.96201 0.96119 0.79143 0.93926 0.80396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 11.46 127.77 1.46 2.31 16 2 N -0.38 -7.59 4.00 -368.69 -1.48 -9.06 16 3 C 0.10 1.91 11.45 83.82 0.96 2.87 16 4 C -0.20 -5.13 5.82 -20.34 -0.12 -5.25 16 5 C 0.20 4.74 7.27 44.10 0.32 5.06 16 6 N -0.31 -6.02 12.65 -44.49 -0.56 -6.59 16 7 N -0.45 -4.76 7.20 -56.41 -0.41 -5.16 16 8 H 0.46 1.21 8.96 -213.53 -1.91 -0.71 16 9 C 0.14 1.50 11.50 84.30 0.97 2.47 16 10 C -0.32 -6.60 6.31 -18.78 -0.12 -6.72 16 11 C 0.59 15.05 7.81 86.61 0.68 15.73 16 12 O -0.58 -19.34 12.94 -4.09 -0.05 -19.39 16 13 N -0.71 -14.93 5.55 -466.55 -2.59 -17.52 16 14 C 0.14 3.57 5.67 86.38 0.49 4.06 16 15 C -0.12 -3.31 5.44 30.59 0.17 -3.14 16 16 C 0.15 5.89 6.26 86.38 0.54 6.43 16 17 N -0.75 -37.62 5.60 -343.46 -1.92 -39.54 16 18 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 19 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 21 N -0.97 -58.60 13.06 21.65 0.28 -58.31 16 22 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 C 0.10 2.96 10.12 85.51 0.87 3.83 16 27 N -0.34 -9.69 12.54 -56.44 -0.71 -10.40 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.21 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.23 0.08 7.48 -2.91 -0.02 0.06 16 33 H 0.41 5.57 7.43 -92.71 -0.69 4.88 16 34 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 39 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.38 19.70 7.67 -92.71 -0.71 18.99 16 41 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 42 H 0.18 5.60 6.38 -2.91 -0.02 5.58 16 Total: -1.00 -84.67 364.42 -0.11 -84.78 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -2.22 Total: 22.27 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 7.52 Total: 10.68 kcal Atomic # 7 Polarization: -139.21 SS G_CDS: -7.38 Total: -146.59 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.05 Total: -19.39 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -84.67 -0.11 -84.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170802230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.260 kcal (2) G-P(sol) polarization free energy of solvation -84.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds