Wall clock time and date at job start Fri Apr 10 2020 14:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50698 * 109.47592 * 179.97438 * 3 2 1 5 5 C 1.38357 * 119.85854 * 269.72765 * 4 3 2 6 6 C 1.37953 * 120.15014 * 179.76100 * 5 4 3 7 7 C 1.39582 * 119.84948 * 0.51172 * 6 5 4 8 8 C 1.47846 * 120.14362 * 179.76562 * 7 6 5 9 9 O 1.21546 * 119.99793 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99754 * 359.97438 * 8 7 6 11 11 C 1.46507 * 119.99885 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.88275 * 31.11489 * 11 10 8 13 13 C 1.54915 * 111.00159 * 267.19928 * 11 10 8 14 14 N 1.47429 * 104.82719 * 204.91575 * 13 11 10 15 15 C 1.36939 * 125.64187 * 204.08228 * 14 13 11 16 16 H 1.08002 * 120.00573 * 0.02562 * 15 14 13 17 17 C 1.38811 * 119.99417 * 180.02562 * 15 14 13 18 18 N 1.31622 * 120.00560 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99663 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47138 * 90.00360 * 19 17 15 21 21 H 1.48504 * 109.46957 * 210.00052 * 19 17 15 22 22 H 1.48495 * 109.47230 * 329.99582 * 19 17 15 23 23 C 1.47015 * 108.70784 * 24.12546 * 14 13 11 24 24 C 1.54330 * 107.27120 * 358.94204 * 23 14 13 25 25 H 1.08997 * 110.72087 * 96.16897 * 24 23 14 26 26 O 1.42899 * 110.72452 * 219.44447 * 24 23 14 27 27 C 1.39575 * 119.70931 * 359.74251 * 7 6 5 28 28 C 1.37950 * 119.85470 * 0.02562 * 27 7 6 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 36 36 H 1.08006 * 119.92273 * 0.02562 * 5 4 3 37 37 H 1.08006 * 120.07760 * 180.25257 * 6 5 4 38 38 H 0.96995 * 120.00789 * 0.02562 * 10 8 7 39 39 H 1.08996 * 110.36738 * 323.74758 * 13 11 10 40 40 H 1.08999 * 110.37084 * 86.07443 * 13 11 10 41 41 H 0.96992 * 120.00387 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.88483 * 239.52930 * 23 14 13 43 43 H 1.08995 * 110.01233 * 118.42796 * 23 14 13 44 44 H 0.96702 * 113.99702 * 293.52992 * 26 24 23 45 45 H 1.08006 * 120.07102 * 180.02562 * 27 7 6 46 46 H 1.08004 * 119.92871 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2353 1.4483 1.2008 6 6 5.6148 1.4434 1.2085 7 6 6.3163 1.4433 0.0017 8 6 7.7947 1.4432 0.0023 9 8 8.4028 1.4427 -1.0501 10 7 8.4681 1.4439 1.1698 11 6 9.9331 1.4444 1.1704 12 1 10.3219 1.9706 0.2985 13 6 10.4889 0.0001 1.2418 14 7 11.8305 0.1411 1.8366 15 6 12.8676 -0.7399 1.6838 16 1 12.7375 -1.6287 1.0840 17 6 14.0863 -0.4907 2.2998 18 7 14.2449 0.5921 3.0311 19 14 15.5010 -1.6928 2.0920 20 1 16.3053 -1.3101 0.9038 21 1 16.3603 -1.6600 3.3028 22 1 14.9621 -3.0637 1.9045 23 6 11.8701 1.3834 2.6216 24 6 10.4885 2.0572 2.4831 25 1 9.8489 1.8028 3.3283 26 8 10.6270 3.4742 2.3606 27 6 5.6158 1.4427 -1.2056 28 6 4.2363 1.4427 -1.1991 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 3.6913 1.4525 2.1339 37 1 6.1510 1.4439 2.1461 38 1 7.9828 1.4440 2.0096 39 1 9.8555 -0.6191 1.8769 40 1 10.5601 -0.4288 0.2423 41 1 15.0963 0.7661 3.4618 42 1 12.6450 2.0435 2.2322 43 1 12.0684 1.1565 3.6691 44 1 10.9710 3.9058 3.1547 45 1 6.1526 1.4421 -2.1428 46 1 3.6930 1.4419 -2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077593035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:54 Heat of formation + Delta-G solvation = -68.682163 kcal Electronic energy + Delta-G solvation = -25977.843732 eV Core-core repulsion = 22252.519818 eV Total energy + Delta-G solvation = -3725.323913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.43748 -40.10439 -39.15342 -36.70634 -35.96068 -35.66014 -33.73485 -32.17604 -31.91488 -30.20459 -28.91463 -27.61885 -26.29744 -24.00782 -23.61045 -22.48987 -22.13972 -21.92209 -21.22625 -19.35320 -18.78223 -18.29409 -17.46398 -16.82995 -16.48607 -16.23029 -16.09283 -16.00916 -15.74081 -15.25513 -15.06033 -14.69732 -14.49761 -14.47001 -14.31297 -14.22750 -13.78157 -13.65604 -13.27269 -13.18348 -13.01583 -12.85470 -12.77087 -12.75233 -12.10561 -12.02590 -12.01242 -11.93690 -11.89751 -11.57611 -11.44924 -11.22305 -10.89031 -10.78932 -10.28375 -9.94953 -9.67495 -8.99248 -7.90439 -5.27965 -0.16845 0.42382 1.44625 1.47200 1.55538 1.79725 1.97010 2.46407 2.85752 3.09795 3.30013 3.51402 3.58234 3.82583 3.83139 3.90907 4.00950 4.03101 4.15051 4.20879 4.28277 4.40924 4.43710 4.49017 4.51524 4.56311 4.78114 4.80380 4.86142 4.94377 4.97889 5.05468 5.07471 5.27746 5.30184 5.32186 5.35260 5.38792 5.41523 5.43431 5.51246 5.64508 5.64897 5.94976 6.11478 6.46503 6.85486 7.02788 7.13852 7.66841 8.29377 9.19287 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024592 B = 0.002337 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.295877 B =11978.983194 C =12328.629448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.081 4.081 4 C -0.054 4.054 5 C -0.124 4.124 6 C -0.079 4.079 7 C -0.156 4.156 8 C 0.554 3.446 9 O -0.585 6.585 10 N -0.695 5.695 11 C 0.151 3.849 12 H 0.071 0.929 13 C 0.131 3.869 14 N -0.622 5.622 15 C -0.248 4.248 16 H 0.081 0.919 17 C -0.062 4.062 18 N -0.948 5.948 19 Si 0.982 3.018 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.268 1.268 23 C 0.162 3.838 24 C 0.091 3.909 25 H 0.098 0.902 26 O -0.569 6.569 27 C -0.074 4.074 28 C -0.127 4.127 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.415 0.585 39 H 0.045 0.955 40 H 0.032 0.968 41 H 0.250 0.750 42 H 0.020 0.980 43 H 0.029 0.971 44 H 0.397 0.603 45 H 0.120 0.880 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.876 3.130 -0.196 29.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.118 4.118 4 C -0.054 4.054 5 C -0.142 4.142 6 C -0.098 4.098 7 C -0.159 4.159 8 C 0.343 3.657 9 O -0.467 6.467 10 N -0.346 5.346 11 C 0.045 3.955 12 H 0.089 0.911 13 C 0.004 3.996 14 N -0.349 5.349 15 C -0.377 4.377 16 H 0.099 0.901 17 C -0.256 4.256 18 N -0.596 5.596 19 Si 0.810 3.190 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.193 1.193 23 C 0.036 3.964 24 C 0.031 3.969 25 H 0.115 0.885 26 O -0.377 6.377 27 C -0.093 4.093 28 C -0.145 4.145 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.175 0.825 37 H 0.164 0.836 38 H 0.254 0.746 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.039 0.961 43 H 0.047 0.953 44 H 0.247 0.753 45 H 0.138 0.862 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -28.470 2.995 -1.432 28.663 hybrid contribution 1.679 -0.428 0.595 1.832 sum -26.791 2.567 -0.837 26.927 Atomic orbital electron populations 1.21777 0.94787 1.02000 1.02348 1.21497 0.96406 0.95547 1.02214 1.20755 0.88626 0.97993 1.04410 1.20466 0.97290 0.94927 0.92746 1.21322 0.93174 1.00526 0.99128 1.21544 0.95337 0.96257 0.96649 1.19819 0.90641 1.09307 0.96165 1.18884 0.88502 0.75026 0.83277 1.90750 1.71070 1.51987 1.32850 1.45567 1.05716 1.74266 1.09093 1.21777 0.79707 0.95835 0.98218 0.91053 1.21928 0.86567 0.94496 0.96564 1.44513 1.08847 1.23919 1.57662 1.19440 0.90467 1.01484 1.26295 0.90121 1.25675 1.00224 0.99895 0.99766 1.70121 1.24580 1.27781 1.37139 0.85032 0.78733 0.78526 0.76733 1.21533 1.21494 1.19320 1.21626 0.92850 0.86989 0.94948 1.23165 0.96271 0.81218 0.96249 0.88490 1.86443 1.88249 1.18684 1.44311 1.21320 0.95032 0.95828 0.97160 1.21226 0.92657 1.01281 0.99365 0.92326 0.92044 0.92635 0.91937 0.92437 0.89877 0.89290 0.82539 0.83564 0.74615 0.93757 0.94932 0.94080 0.96143 0.95280 0.75294 0.86221 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.12 -1.07 5.92 30.59 0.18 -0.89 16 3 C -0.08 -0.70 5.34 29.84 0.16 -0.54 16 4 C -0.05 -0.75 5.14 -19.81 -0.10 -0.85 16 5 C -0.12 -1.70 9.68 22.23 0.22 -1.49 16 6 C -0.08 -1.42 9.54 22.53 0.21 -1.20 16 7 C -0.16 -3.96 5.87 -20.09 -0.12 -4.08 16 8 C 0.55 18.48 7.77 86.79 0.67 19.15 16 9 O -0.59 -25.06 15.99 -3.86 -0.06 -25.12 16 10 N -0.69 -21.06 5.15 -438.81 -2.26 -23.32 16 11 C 0.15 5.89 3.15 46.38 0.15 6.04 16 12 H 0.07 3.32 7.54 -2.39 -0.02 3.31 16 13 C 0.13 5.79 6.93 86.86 0.60 6.39 16 14 N -0.62 -32.91 3.39 -691.99 -2.35 -35.25 16 15 C -0.25 -14.30 10.28 84.03 0.86 -13.44 16 16 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 17 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 18 N -0.95 -56.58 10.31 21.65 0.22 -56.35 16 19 Si 0.98 46.30 29.55 68.60 2.03 48.32 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C 0.16 7.89 5.15 86.73 0.45 8.33 16 24 C 0.09 3.32 3.98 31.78 0.13 3.44 16 25 H 0.10 2.82 8.00 -2.39 -0.02 2.80 16 26 O -0.57 -19.32 13.39 -148.98 -1.99 -21.31 16 27 C -0.07 -1.77 9.60 22.52 0.22 -1.56 16 28 C -0.13 -2.18 9.68 22.23 0.22 -1.97 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 35 H 0.09 0.56 8.08 -2.39 -0.02 0.54 16 36 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 37 H 0.15 1.91 6.41 -2.91 -0.02 1.89 16 38 H 0.42 9.19 6.60 -92.71 -0.61 8.58 16 39 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 42 H 0.02 1.15 7.30 -2.39 -0.02 1.13 16 43 H 0.03 1.52 7.50 -2.39 -0.02 1.50 16 44 H 0.40 9.84 9.12 -74.06 -0.68 9.16 16 45 H 0.12 3.15 7.65 -2.91 -0.02 3.13 16 46 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -77.02 378.05 0.31 -76.71 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -0.29 Total: 22.47 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 5.02 Total: 13.85 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -4.38 Total: -114.93 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -2.06 Total: -46.43 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -77.02 0.31 -76.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077593035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.031 kcal (2) G-P(sol) polarization free energy of solvation -77.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds