Wall clock time and date at job start Fri Apr 10 2020 14:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50710 * 109.46793 * 2 1 4 4 C 1.37973 * 120.07162 * 261.18069 * 3 2 1 5 5 C 1.38337 * 120.14324 * 180.02562 * 4 3 2 6 6 C 1.38378 * 120.29353 * 359.97438 * 5 4 3 7 7 C 1.37938 * 120.14394 * 359.74321 * 6 5 4 8 8 C 1.39549 * 120.07265 * 81.20569 * 3 2 1 9 9 C 1.47846 * 120.14453 * 359.95695 * 8 3 2 10 10 O 1.21551 * 120.00064 * 356.01402 * 9 8 3 11 11 N 1.34784 * 120.00078 * 176.01709 * 9 8 3 12 12 C 1.46492 * 119.99972 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.46218 * 35.02666 * 12 11 9 14 14 C 1.53038 * 109.44998 * 275.05619 * 12 11 9 15 15 C 1.53188 * 109.31554 * 301.35363 * 14 12 11 16 16 N 1.46922 * 108.77648 * 305.36621 * 15 14 12 17 17 C 1.36941 * 120.62580 * 233.58625 * 16 15 14 18 18 H 1.07996 * 120.00437 * 27.59386 * 17 16 15 19 19 C 1.38815 * 119.99440 * 207.59323 * 17 16 15 20 20 N 1.31616 * 120.00212 * 18.16214 * 19 17 16 21 21 Si 1.86798 * 119.99758 * 198.15961 * 19 17 16 22 22 H 1.48498 * 109.47437 * 60.00065 * 21 19 17 23 23 H 1.48496 * 109.47329 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47213 * 299.99796 * 21 19 17 25 25 C 1.46919 * 118.73995 * 53.60393 * 16 15 14 26 26 C 1.53050 * 109.45949 * 154.99813 * 12 11 9 27 27 H 1.08999 * 109.49590 * 178.62049 * 26 12 11 28 28 O 1.42893 * 109.49611 * 298.69183 * 26 12 11 29 29 H 1.09000 * 109.47096 * 60.00117 * 1 2 3 30 30 H 1.09000 * 109.46672 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47532 * 299.99732 * 1 2 3 32 32 H 1.08999 * 109.47532 * 240.00267 * 2 1 3 33 33 H 1.08999 * 109.47596 * 120.00030 * 2 1 3 34 34 H 1.08004 * 119.93070 * 0.02877 * 4 3 2 35 35 H 1.08009 * 119.85694 * 179.97438 * 5 4 3 36 36 H 1.08004 * 119.92663 * 179.97438 * 6 5 4 37 37 H 1.08000 * 120.07425 * 180.27496 * 7 6 5 38 38 H 0.97004 * 119.99331 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.49430 * 61.30665 * 14 12 11 40 40 H 1.08996 * 109.50086 * 181.39874 * 14 12 11 41 41 H 1.09008 * 109.58452 * 65.15085 * 15 14 12 42 42 H 1.09001 * 109.58747 * 185.57249 * 15 14 12 43 43 H 0.97001 * 119.99774 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58792 * 186.60171 * 25 16 15 45 45 H 1.09000 * 109.58785 * 66.18164 * 25 16 15 46 46 H 0.96702 * 113.99709 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4353 2.0118 -1.1799 5 6 2.8971 3.3158 -1.1815 6 6 2.9576 4.0363 -0.0017 7 6 2.5523 3.4594 1.1839 8 6 2.0912 2.1418 1.1934 9 6 1.6606 1.5151 2.4614 10 8 1.1865 0.3959 2.4559 11 7 1.7937 2.1848 3.6234 12 6 1.3665 1.5641 4.8797 13 1 1.5620 0.4925 4.8402 14 6 -0.1317 1.8019 5.0820 15 6 -0.4073 3.3087 5.1024 16 7 0.4458 3.9317 6.1235 17 6 -0.0992 4.7203 7.1015 18 1 -1.1177 4.5575 7.4214 19 6 0.6577 5.7291 7.6815 20 7 1.7409 6.1694 7.0773 21 14 0.1388 6.4617 9.3196 22 1 0.1111 5.3950 10.3524 23 1 1.1069 7.5140 9.7202 24 1 -1.2145 7.0589 9.1884 25 6 1.8946 3.6928 6.0753 26 6 2.1445 2.1817 6.0440 27 1 1.8097 1.7377 6.9815 28 8 3.5408 1.9327 5.8700 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.3901 1.4550 -2.1043 35 1 3.2118 3.7736 -2.1078 36 1 3.3195 5.0539 -0.0097 37 1 2.5958 4.0242 2.1033 38 1 2.1724 3.0779 3.6278 39 1 -0.6867 1.3416 4.2646 40 1 -0.4454 1.3618 6.0285 41 1 -0.1789 3.7352 4.1256 42 1 -1.4554 3.4852 5.3445 43 1 2.2696 6.8746 7.4825 44 1 2.3656 4.1228 6.9593 45 1 2.3108 4.1506 5.1779 46 1 4.0958 2.2965 6.5733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090521330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:03 Heat of formation + Delta-G solvation = -40.014080 kcal Electronic energy + Delta-G solvation = -27880.315066 eV Core-core repulsion = 24156.234294 eV Total energy + Delta-G solvation = -3724.080772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.42068 -38.88236 -37.49020 -35.31724 -34.55770 -33.51960 -32.23124 -31.05335 -29.58977 -29.27035 -28.78013 -25.44450 -24.20451 -23.36589 -22.39776 -21.90847 -21.12921 -20.36982 -18.69316 -17.78342 -16.95109 -16.57367 -15.92862 -15.60822 -15.24374 -14.96218 -14.82248 -14.63743 -14.04577 -13.82824 -13.74588 -13.65025 -13.39865 -13.09091 -12.95002 -12.61252 -12.27578 -12.17607 -11.86784 -11.71433 -11.65571 -11.55874 -11.11630 -11.06494 -10.87109 -10.82813 -10.70648 -10.45950 -10.24281 -10.02053 -9.64739 -9.39845 -9.27664 -9.00272 -8.78893 -8.62707 -8.47088 -6.81910 -5.92393 -3.34800 0.91937 1.34046 3.08646 3.31092 3.37434 3.38766 3.51423 3.92382 4.37913 4.57768 4.73495 4.80295 4.86748 5.02146 5.22183 5.24106 5.37943 5.40069 5.47101 5.48759 5.60879 5.62779 5.69000 5.81428 5.84939 5.91467 5.98244 6.01637 6.06259 6.21276 6.25368 6.31003 6.39791 6.40832 6.43442 6.50569 6.65813 6.70321 6.79231 6.88192 6.97188 7.02690 7.35967 7.68141 7.90356 8.07336 8.31157 8.55920 9.06334 9.69421 10.25135 11.15874 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018236 B = 0.003715 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.044638 B = 7534.946807 C = 8039.850762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 C -0.023 4.023 4 C -0.134 4.134 5 C -0.096 4.096 6 C -0.134 4.134 7 C -0.079 4.079 8 C -0.131 4.131 9 C 0.554 3.446 10 O -0.540 6.540 11 N -0.700 5.700 12 C 0.166 3.834 13 H 0.080 0.920 14 C -0.144 4.144 15 C 0.145 3.855 16 N -0.587 5.587 17 C -0.257 4.257 18 H 0.068 0.932 19 C 0.005 3.995 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.147 3.853 26 C 0.066 3.934 27 H 0.062 0.938 28 O -0.572 6.572 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.403 0.597 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.020 0.980 42 H 0.057 0.943 43 H 0.255 0.745 44 H 0.092 0.908 45 H 0.023 0.977 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 -7.296 -12.715 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.126 4.126 3 C -0.024 4.024 4 C -0.152 4.152 5 C -0.114 4.114 6 C -0.152 4.152 7 C -0.098 4.098 8 C -0.134 4.134 9 C 0.342 3.658 10 O -0.419 6.419 11 N -0.351 5.351 12 C 0.062 3.938 13 H 0.098 0.902 14 C -0.184 4.184 15 C 0.019 3.981 16 N -0.311 5.311 17 C -0.386 4.386 18 H 0.086 0.914 19 C -0.194 4.194 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.208 1.208 25 C 0.020 3.980 26 C 0.005 3.995 27 H 0.080 0.920 28 O -0.377 6.377 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.240 0.760 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.110 0.890 45 H 0.041 0.959 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.475 -8.238 -13.157 15.720 hybrid contribution 0.232 1.410 1.369 1.979 sum 2.707 -6.828 -11.789 13.890 Atomic orbital electron populations 1.21591 0.94385 1.01433 1.01589 1.20752 0.96863 0.91831 1.03172 1.20053 0.94441 0.96383 0.91521 1.21015 1.01199 0.95514 0.97456 1.21303 0.97659 0.94322 0.98141 1.21091 1.01315 1.00388 0.92406 1.21424 0.95687 0.93846 0.98830 1.19889 1.04739 0.95007 0.93772 1.18203 0.78584 0.85398 0.83596 1.90673 1.45559 1.18898 1.86813 1.45948 1.62969 1.20096 1.06075 1.20810 0.93660 0.97395 0.81968 0.90227 1.22397 0.94402 0.99965 1.01650 1.20925 0.95218 0.89931 0.92038 1.43955 1.01609 1.55702 1.29864 1.19168 0.98868 1.08865 1.11709 0.91432 1.25029 0.98497 0.96220 0.99679 1.70013 1.18281 1.28958 1.37372 0.86360 0.77867 0.78469 0.84039 1.20968 1.21596 1.20790 1.21378 0.85871 0.88894 1.01862 1.22945 0.80414 0.99708 0.96419 0.91997 1.86420 1.17892 1.80962 1.52429 0.93969 0.92862 0.91568 0.92422 0.88139 0.85733 0.85858 0.85496 0.85389 0.75993 0.91656 0.91144 0.96228 0.92474 0.93465 0.89006 0.95925 0.77761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.42 37.16 0.35 -1.34 16 2 C -0.09 -1.15 5.33 -27.88 -0.15 -1.30 16 3 C -0.02 -0.31 5.17 -104.23 -0.54 -0.85 16 4 C -0.13 -1.49 9.66 -39.64 -0.38 -1.87 16 5 C -0.10 -0.99 10.04 -39.49 -0.40 -1.39 16 6 C -0.13 -1.53 10.03 -39.64 -0.40 -1.93 16 7 C -0.08 -1.07 9.53 -39.18 -0.37 -1.44 16 8 C -0.13 -1.95 5.87 -104.97 -0.62 -2.56 16 9 C 0.55 9.34 7.58 -12.33 -0.09 9.24 16 10 O -0.54 -9.81 11.25 5.32 0.06 -9.75 16 11 N -0.70 -11.91 4.10 -54.71 -0.22 -12.13 16 12 C 0.17 2.96 2.47 -67.89 -0.17 2.79 16 13 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 14 C -0.14 -2.55 5.77 -26.61 -0.15 -2.71 16 15 C 0.15 2.94 6.26 -3.71 -0.02 2.92 16 16 N -0.59 -13.70 2.99 -172.33 -0.52 -14.21 16 17 C -0.26 -6.67 9.58 -15.06 -0.14 -6.82 16 18 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 19 C 0.00 0.12 4.89 -17.43 -0.09 0.04 16 20 N -0.90 -24.56 11.23 55.49 0.62 -23.93 16 21 Si 0.90 20.73 29.59 -169.99 -5.03 15.70 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.15 3.18 4.64 -3.72 -0.02 3.16 16 26 C 0.07 1.21 3.36 -26.61 -0.09 1.12 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 O -0.57 -9.70 13.21 -35.23 -0.47 -10.16 16 29 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.00 6.55 -51.93 -0.34 0.66 16 32 H 0.06 0.61 8.02 -51.93 -0.42 0.20 16 33 H 0.10 1.51 5.96 -51.93 -0.31 1.20 16 34 H 0.12 1.09 8.04 -52.48 -0.42 0.67 16 35 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 36 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 37 H 0.13 1.71 6.43 -52.49 -0.34 1.37 16 38 H 0.40 6.88 4.92 -40.82 -0.20 6.68 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.02 0.41 7.74 -51.92 -0.40 0.01 16 42 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 43 H 0.26 6.78 8.31 -40.82 -0.34 6.45 16 44 H 0.09 2.22 6.06 -51.93 -0.31 1.91 16 45 H 0.02 0.51 6.64 -51.93 -0.34 0.17 16 46 H 0.38 5.08 9.08 45.56 0.41 5.49 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -29.35 361.26 -9.37 -38.73 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -5.99 Total: 13.27 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -3.28 Total: -2.94 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.12 Total: -50.28 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.41 Total: -19.92 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.35 -9.37 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090521330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.286 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds