Wall clock time and date at job start Fri Apr 10 2020 14:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50710 * 109.46793 * 2 1 4 4 C 1.37973 * 120.07162 * 261.18069 * 3 2 1 5 5 C 1.38337 * 120.14324 * 180.02562 * 4 3 2 6 6 C 1.38378 * 120.29353 * 359.97438 * 5 4 3 7 7 C 1.37938 * 120.14394 * 359.74321 * 6 5 4 8 8 C 1.39549 * 120.07265 * 81.20569 * 3 2 1 9 9 C 1.47846 * 120.14453 * 359.95695 * 8 3 2 10 10 O 1.21551 * 120.00064 * 356.01402 * 9 8 3 11 11 N 1.34784 * 120.00078 * 176.01709 * 9 8 3 12 12 C 1.46492 * 119.99972 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.46218 * 35.02666 * 12 11 9 14 14 C 1.53038 * 109.44998 * 275.05619 * 12 11 9 15 15 C 1.53188 * 109.31554 * 301.35363 * 14 12 11 16 16 N 1.46922 * 108.77648 * 305.36621 * 15 14 12 17 17 C 1.36941 * 120.62580 * 233.58625 * 16 15 14 18 18 H 1.07996 * 120.00437 * 27.59386 * 17 16 15 19 19 C 1.38815 * 119.99440 * 207.59323 * 17 16 15 20 20 N 1.31616 * 120.00212 * 18.16214 * 19 17 16 21 21 Si 1.86798 * 119.99758 * 198.15961 * 19 17 16 22 22 H 1.48498 * 109.47437 * 60.00065 * 21 19 17 23 23 H 1.48496 * 109.47329 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47213 * 299.99796 * 21 19 17 25 25 C 1.46919 * 118.73995 * 53.60393 * 16 15 14 26 26 C 1.53050 * 109.45949 * 154.99813 * 12 11 9 27 27 H 1.08999 * 109.49590 * 178.62049 * 26 12 11 28 28 O 1.42893 * 109.49611 * 298.69183 * 26 12 11 29 29 H 1.09000 * 109.47096 * 60.00117 * 1 2 3 30 30 H 1.09000 * 109.46672 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47532 * 299.99732 * 1 2 3 32 32 H 1.08999 * 109.47532 * 240.00267 * 2 1 3 33 33 H 1.08999 * 109.47596 * 120.00030 * 2 1 3 34 34 H 1.08004 * 119.93070 * 0.02877 * 4 3 2 35 35 H 1.08009 * 119.85694 * 179.97438 * 5 4 3 36 36 H 1.08004 * 119.92663 * 179.97438 * 6 5 4 37 37 H 1.08000 * 120.07425 * 180.27496 * 7 6 5 38 38 H 0.97004 * 119.99331 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.49430 * 61.30665 * 14 12 11 40 40 H 1.08996 * 109.50086 * 181.39874 * 14 12 11 41 41 H 1.09008 * 109.58452 * 65.15085 * 15 14 12 42 42 H 1.09001 * 109.58747 * 185.57249 * 15 14 12 43 43 H 0.97001 * 119.99774 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58792 * 186.60171 * 25 16 15 45 45 H 1.09000 * 109.58785 * 66.18164 * 25 16 15 46 46 H 0.96702 * 113.99709 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4353 2.0118 -1.1799 5 6 2.8971 3.3158 -1.1815 6 6 2.9576 4.0363 -0.0017 7 6 2.5523 3.4594 1.1839 8 6 2.0912 2.1418 1.1934 9 6 1.6606 1.5151 2.4614 10 8 1.1865 0.3959 2.4559 11 7 1.7937 2.1848 3.6234 12 6 1.3665 1.5641 4.8797 13 1 1.5620 0.4925 4.8402 14 6 -0.1317 1.8019 5.0820 15 6 -0.4073 3.3087 5.1024 16 7 0.4458 3.9317 6.1235 17 6 -0.0992 4.7203 7.1015 18 1 -1.1177 4.5575 7.4214 19 6 0.6577 5.7291 7.6815 20 7 1.7409 6.1694 7.0773 21 14 0.1388 6.4617 9.3196 22 1 0.1111 5.3950 10.3524 23 1 1.1069 7.5140 9.7202 24 1 -1.2145 7.0589 9.1884 25 6 1.8946 3.6928 6.0753 26 6 2.1445 2.1817 6.0440 27 1 1.8097 1.7377 6.9815 28 8 3.5408 1.9327 5.8700 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.3901 1.4550 -2.1043 35 1 3.2118 3.7736 -2.1078 36 1 3.3195 5.0539 -0.0097 37 1 2.5958 4.0242 2.1033 38 1 2.1724 3.0779 3.6278 39 1 -0.6867 1.3416 4.2646 40 1 -0.4454 1.3618 6.0285 41 1 -0.1789 3.7352 4.1256 42 1 -1.4554 3.4852 5.3445 43 1 2.2696 6.8746 7.4825 44 1 2.3656 4.1228 6.9593 45 1 2.3108 4.1506 5.1779 46 1 4.0958 2.2965 6.5733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090521330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:02 Heat of formation + Delta-G solvation = -58.198049 kcal Electronic energy + Delta-G solvation = -27881.103582 eV Core-core repulsion = 24156.234294 eV Total energy + Delta-G solvation = -3724.869288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64038 -40.17196 -38.79654 -36.88004 -35.93766 -34.75093 -33.75244 -32.37038 -31.03709 -30.49981 -30.18735 -27.24519 -25.33503 -24.36098 -24.00345 -23.52316 -22.32622 -21.48446 -20.23368 -19.04360 -18.63712 -18.10182 -17.07791 -16.84451 -16.70516 -16.32358 -16.07631 -15.89875 -15.65868 -15.47126 -15.08301 -14.80185 -14.63697 -14.41463 -14.12593 -13.94441 -13.76985 -13.49414 -13.27758 -13.09430 -12.88936 -12.70126 -12.64327 -12.62071 -12.47648 -12.21052 -12.05379 -11.85278 -11.83611 -11.68740 -11.26062 -10.97423 -10.58550 -10.54725 -10.07866 -9.85128 -9.63558 -8.72803 -7.90976 -5.35943 -0.08157 0.41425 1.48477 1.50386 1.56801 1.94048 2.21595 2.49661 2.89610 3.12289 3.25824 3.64113 3.72880 3.82296 3.86476 3.96880 4.13289 4.14686 4.24527 4.34284 4.36017 4.44234 4.49945 4.56501 4.62307 4.65878 4.70010 4.87400 4.91660 4.96503 5.02341 5.05868 5.13246 5.13952 5.24628 5.29971 5.38992 5.41770 5.51472 5.55824 5.62133 5.64453 5.67527 5.98945 6.33385 6.56575 6.80850 7.11048 7.24689 7.78678 8.30910 9.14753 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018236 B = 0.003715 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.044638 B = 7534.946807 C = 8039.850762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.036 4.036 4 C -0.131 4.131 5 C -0.085 4.085 6 C -0.137 4.137 7 C -0.094 4.094 8 C -0.156 4.156 9 C 0.550 3.450 10 O -0.558 6.558 11 N -0.701 5.701 12 C 0.169 3.831 13 H 0.076 0.924 14 C -0.130 4.130 15 C 0.147 3.853 16 N -0.601 5.601 17 C -0.269 4.269 18 H 0.067 0.933 19 C -0.040 4.040 20 N -0.928 5.928 21 Si 0.964 3.036 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.279 1.279 25 C 0.159 3.841 26 C 0.083 3.917 27 H 0.064 0.936 28 O -0.574 6.574 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.148 0.852 37 H 0.118 0.882 38 H 0.401 0.599 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.014 0.986 42 H 0.056 0.944 43 H 0.252 0.748 44 H 0.065 0.935 45 H 0.009 0.991 46 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 -7.542 -14.455 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.123 4.123 3 C -0.037 4.037 4 C -0.149 4.149 5 C -0.103 4.103 6 C -0.155 4.155 7 C -0.112 4.112 8 C -0.159 4.159 9 C 0.340 3.660 10 O -0.439 6.439 11 N -0.352 5.352 12 C 0.064 3.936 13 H 0.094 0.906 14 C -0.170 4.170 15 C 0.022 3.978 16 N -0.325 5.325 17 C -0.399 4.399 18 H 0.085 0.915 19 C -0.237 4.237 20 N -0.573 5.573 21 Si 0.792 3.208 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.205 1.205 25 C 0.033 3.967 26 C 0.022 3.978 27 H 0.082 0.918 28 O -0.381 6.381 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.165 0.835 37 H 0.136 0.864 38 H 0.238 0.762 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.084 0.916 45 H 0.026 0.974 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.710 -8.499 -14.900 17.367 hybrid contribution 0.184 1.501 1.810 2.359 sum 2.894 -6.999 -13.090 15.123 Atomic orbital electron populations 1.21533 0.94499 1.01697 1.00786 1.20696 0.96735 0.91797 1.03103 1.20250 0.94989 0.96602 0.91906 1.21371 0.99897 0.96024 0.97559 1.21741 0.95698 0.93841 0.99013 1.21405 1.00601 1.01449 0.92022 1.21462 0.96628 0.93543 0.99606 1.19850 1.06872 0.95895 0.93326 1.18620 0.78052 0.85197 0.84173 1.90659 1.46400 1.19660 1.87169 1.45934 1.63254 1.20018 1.06044 1.20717 0.93495 0.97110 0.82248 0.90558 1.22238 0.94604 0.97956 1.02198 1.20956 0.94715 0.91251 0.90915 1.44148 1.02435 1.55730 1.30228 1.19457 0.99047 1.09087 1.12314 0.91524 1.25687 0.98771 0.96829 1.02367 1.70145 1.19239 1.29466 1.38461 0.85407 0.77301 0.77566 0.80531 1.20453 1.21996 1.20459 1.21177 0.84889 0.90848 0.99811 1.22616 0.81306 0.97083 0.96788 0.91830 1.86402 1.17298 1.80911 1.53441 0.92474 0.92082 0.94512 0.89789 0.90797 0.82765 0.82214 0.83452 0.86375 0.76169 0.91044 0.90519 0.96835 0.92518 0.93913 0.91642 0.97356 0.75960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.42 71.98 0.68 -2.49 16 2 C -0.09 -2.14 5.33 29.85 0.16 -1.98 16 3 C -0.04 -0.93 5.17 -19.61 -0.10 -1.03 16 4 C -0.13 -2.49 9.66 22.23 0.21 -2.28 16 5 C -0.09 -1.46 10.04 22.33 0.22 -1.23 16 6 C -0.14 -2.84 10.03 22.23 0.22 -2.62 16 7 C -0.09 -2.51 9.53 22.53 0.21 -2.29 16 8 C -0.16 -4.66 5.87 -20.09 -0.12 -4.78 16 9 C 0.55 18.98 7.58 86.79 0.66 19.64 16 10 O -0.56 -20.79 11.25 -3.88 -0.04 -20.83 16 11 N -0.70 -24.48 4.10 -445.28 -1.83 -26.31 16 12 C 0.17 6.07 2.47 45.02 0.11 6.18 16 13 H 0.08 2.83 7.58 -2.39 -0.02 2.81 16 14 C -0.13 -4.61 5.77 30.67 0.18 -4.44 16 15 C 0.15 6.03 6.26 86.36 0.54 6.57 16 16 N -0.60 -28.47 2.99 -699.12 -2.09 -30.56 16 17 C -0.27 -14.11 9.58 84.03 0.81 -13.31 16 18 H 0.07 3.44 7.89 -2.91 -0.02 3.41 16 19 C -0.04 -2.13 4.89 84.86 0.41 -1.71 16 20 N -0.93 -51.40 11.23 21.65 0.24 -51.16 16 21 Si 0.96 42.85 29.59 68.60 2.03 44.88 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 C 0.16 7.05 4.64 86.36 0.40 7.45 16 26 C 0.08 3.06 3.36 30.67 0.10 3.16 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 O -0.57 -19.32 13.21 -148.98 -1.97 -21.29 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 1.11 6.55 -2.39 -0.02 1.10 16 32 H 0.08 1.59 8.02 -2.39 -0.02 1.57 16 33 H 0.07 2.24 5.96 -2.39 -0.01 2.22 16 34 H 0.15 2.00 8.04 -2.91 -0.02 1.97 16 35 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.12 3.29 6.43 -2.91 -0.02 3.27 16 38 H 0.40 14.23 4.92 -92.71 -0.46 13.77 16 39 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 40 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.01 0.58 7.74 -2.38 -0.02 0.56 16 42 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 43 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 44 H 0.07 3.25 6.06 -2.39 -0.01 3.24 16 45 H 0.01 0.40 6.64 -2.39 -0.02 0.38 16 46 H 0.39 10.41 9.08 -74.06 -0.67 9.74 16 Total: -1.00 -63.58 361.26 0.92 -62.65 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -0.12 Total: 37.76 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 4.70 Total: 4.86 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -3.68 Total: -108.03 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -2.01 Total: -42.12 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -63.58 0.92 -62.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090521330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.457 kcal (2) G-P(sol) polarization free energy of solvation -63.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds