Wall clock time and date at job start Fri Apr 10 2020 14:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47087 * 2 1 4 4 C 1.37983 * 120.07490 * 101.30161 * 3 2 1 5 5 C 1.38330 * 120.14707 * 180.22949 * 4 3 2 6 6 C 1.38384 * 120.28990 * 359.78759 * 5 4 3 7 7 C 1.37928 * 120.14992 * 359.95360 * 6 5 4 8 8 C 1.39554 * 120.07545 * 281.03902 * 3 2 1 9 9 C 1.47847 * 120.14170 * 0.02748 * 8 3 2 10 10 O 1.21548 * 120.00570 * 354.65586 * 9 8 3 11 11 N 1.34780 * 119.99794 * 174.65740 * 9 8 3 12 12 C 1.46506 * 120.00009 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.45634 * 325.02187 * 12 11 9 14 14 C 1.53031 * 109.46056 * 84.99551 * 12 11 9 15 15 C 1.53198 * 109.31253 * 181.37013 * 14 12 11 16 16 N 1.46925 * 108.77625 * 305.36779 * 15 14 12 17 17 C 1.36937 * 120.62952 * 233.58616 * 16 15 14 18 18 H 1.07990 * 120.00024 * 153.69427 * 17 16 15 19 19 C 1.38809 * 119.99808 * 333.68764 * 17 16 15 20 20 N 1.31625 * 120.00307 * 160.88453 * 19 17 16 21 21 Si 1.86806 * 120.00359 * 340.88598 * 19 17 16 22 22 H 1.48495 * 109.47138 * 94.96852 * 21 19 17 23 23 H 1.48496 * 109.47272 * 214.96898 * 21 19 17 24 24 H 1.48502 * 109.46669 * 334.96471 * 21 19 17 25 25 C 1.46922 * 118.73811 * 53.60706 * 16 15 14 26 26 C 1.53035 * 109.44520 * 205.06030 * 12 11 9 27 27 H 1.08997 * 109.50284 * 58.66857 * 26 12 11 28 28 O 1.42904 * 109.50017 * 298.56521 * 26 12 11 29 29 H 1.09000 * 109.47252 * 59.99704 * 1 2 3 30 30 H 1.08995 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46690 * 300.00170 * 1 2 3 32 32 H 1.09004 * 109.46927 * 240.00252 * 2 1 3 33 33 H 1.09000 * 109.47252 * 120.00295 * 2 1 3 34 34 H 1.08004 * 119.92186 * 359.97438 * 4 3 2 35 35 H 1.07997 * 119.85636 * 179.76104 * 5 4 3 36 36 H 1.08004 * 119.92323 * 179.97438 * 6 5 4 37 37 H 1.07991 * 120.07964 * 180.02562 * 7 6 5 38 38 H 0.96999 * 120.00205 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.49932 * 61.42188 * 14 12 11 40 40 H 1.08999 * 109.53168 * 301.33856 * 14 12 11 41 41 H 1.09000 * 109.58069 * 65.15481 * 15 14 12 42 42 H 1.08997 * 109.58597 * 185.57614 * 15 14 12 43 43 H 0.96991 * 120.00383 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58681 * 186.60628 * 25 16 15 45 45 H 1.08996 * 109.70679 * 66.25005 * 25 16 15 46 46 H 0.96697 * 114.00317 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4834 1.9948 1.1709 5 6 2.9404 3.3004 1.1736 6 6 2.9526 4.0380 0.0027 7 6 2.5094 3.4746 -1.1756 8 6 2.0474 2.1573 -1.1853 9 6 1.5704 1.5470 -2.4446 10 8 1.2556 0.3733 -2.4702 11 7 1.4847 2.2922 -3.5644 12 6 1.0115 1.6876 -4.8122 13 1 1.3526 0.6538 -4.8670 14 6 -0.5180 1.7224 -4.8476 15 6 -1.0101 1.0588 -6.1377 16 7 -0.3649 1.7151 -7.2830 17 6 -1.1152 2.2217 -8.3104 18 1 -0.7337 3.0375 -8.9065 19 6 -2.3660 1.6866 -8.5859 20 7 -3.2365 2.3772 -9.2914 21 14 -2.8141 -0.0137 -7.9551 22 1 -3.5427 0.1122 -6.6674 23 1 -3.6798 -0.6980 -8.9488 24 1 -1.5759 -0.8069 -7.7480 25 6 1.1006 1.8171 -7.3052 26 6 1.5691 2.4722 -6.0020 27 1 2.6584 2.4668 -5.9631 28 8 1.0960 3.8196 -5.9487 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.4758 1.4246 2.0882 35 1 3.2888 3.7462 2.0935 36 1 3.3103 5.0571 0.0117 37 1 2.5198 4.0511 -2.0887 38 1 1.7356 3.2289 -3.5440 39 1 -0.8592 2.7572 -4.8178 40 1 -0.9148 1.1836 -3.9872 41 1 -0.7479 0.0009 -6.1274 42 1 -2.0918 1.1685 -6.2154 43 1 -4.1104 2.0032 -9.4842 44 1 1.4117 2.4272 -8.1532 45 1 1.5370 0.8220 -7.3914 46 1 1.4105 4.3759 -6.6744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090521333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:12 Heat of formation + Delta-G solvation = -31.584694 kcal Electronic energy + Delta-G solvation = -27563.603040 eV Core-core repulsion = 23839.887794 eV Total energy + Delta-G solvation = -3723.715246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.59661 -39.03626 -37.83080 -35.18787 -34.90152 -33.67798 -32.22478 -31.39088 -30.06167 -29.59403 -29.17165 -25.43158 -24.09558 -23.48972 -22.83337 -22.07833 -21.07350 -20.33520 -19.73472 -17.82158 -17.09096 -16.47995 -16.07059 -15.98275 -15.44276 -15.16397 -14.91864 -14.72602 -14.35708 -14.15934 -13.90605 -13.84962 -13.48414 -13.36042 -12.96332 -12.87316 -12.38694 -12.34016 -12.01511 -11.94280 -11.79838 -11.74657 -11.49472 -11.23417 -11.03817 -10.86819 -10.83312 -10.23775 -10.08730 -9.99824 -9.65699 -9.45817 -9.44503 -9.21694 -8.97253 -8.72621 -8.58530 -6.98756 -5.93651 -3.29998 0.69842 1.12658 2.85113 3.23318 3.35371 3.50592 3.52496 3.70419 4.51098 4.53246 4.53955 4.60211 4.64046 4.78406 4.92857 5.06009 5.11643 5.21534 5.26244 5.30312 5.40626 5.45055 5.48583 5.56019 5.63184 5.73769 5.81843 5.91403 5.95046 6.06042 6.08859 6.12215 6.19079 6.24299 6.26593 6.34695 6.40657 6.47744 6.50144 6.63202 6.67282 6.75142 6.97483 7.64124 7.89610 8.03284 8.31167 8.32085 8.91274 9.71345 10.06827 11.22141 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.003548 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.908884 B = 7890.847572 C = 8743.396558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 C -0.020 4.020 4 C -0.132 4.132 5 C -0.094 4.094 6 C -0.136 4.136 7 C -0.082 4.082 8 C -0.134 4.134 9 C 0.553 3.447 10 O -0.530 6.530 11 N -0.714 5.714 12 C 0.163 3.837 13 H 0.093 0.907 14 C -0.137 4.137 15 C 0.128 3.872 16 N -0.596 5.596 17 C -0.256 4.256 18 H 0.085 0.915 19 C 0.022 3.978 20 N -0.910 5.910 21 Si 0.884 3.116 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.269 1.269 25 C 0.122 3.878 26 C 0.081 3.919 27 H 0.050 0.950 28 O -0.554 6.554 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.401 0.599 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.262 0.738 44 H 0.071 0.929 45 H 0.032 0.968 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.671 1.827 19.384 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 C -0.021 4.021 4 C -0.150 4.150 5 C -0.113 4.113 6 C -0.154 4.154 7 C -0.101 4.101 8 C -0.137 4.137 9 C 0.340 3.660 10 O -0.409 6.409 11 N -0.365 5.365 12 C 0.059 3.941 13 H 0.111 0.889 14 C -0.178 4.178 15 C 0.002 3.998 16 N -0.320 5.320 17 C -0.384 4.384 18 H 0.103 0.897 19 C -0.177 4.177 20 N -0.553 5.553 21 Si 0.715 3.285 22 H -0.217 1.217 23 H -0.233 1.233 24 H -0.194 1.194 25 C -0.005 4.005 26 C 0.019 3.981 27 H 0.068 0.932 28 O -0.359 6.359 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.237 0.763 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 13.975 0.769 19.759 24.214 hybrid contribution 0.015 -0.095 -0.144 0.173 sum 13.991 0.674 19.615 24.102 Atomic orbital electron populations 1.21595 0.94323 1.01759 1.01499 1.20839 0.96874 0.91798 1.03670 1.20102 0.94016 0.96408 0.91539 1.21067 1.00694 0.95596 0.97631 1.21326 0.97534 0.94206 0.98207 1.21072 1.01431 1.00301 0.92572 1.21348 0.96371 0.93756 0.98643 1.19887 1.04864 0.95003 0.93932 1.18286 0.77995 0.86281 0.83425 1.90708 1.49360 1.15823 1.84994 1.46111 1.66592 1.14230 1.09527 1.20979 0.95472 0.96769 0.80902 0.88896 1.22316 0.93858 1.02730 0.98866 1.21360 0.97906 0.94423 0.86072 1.44191 1.00095 1.68251 1.19431 1.18867 0.98823 1.12312 1.08424 0.89704 1.25229 0.96578 0.98078 0.97790 1.69815 1.06082 1.36823 1.42627 0.86953 0.78002 0.86831 0.76724 1.21718 1.23265 1.19353 1.21558 0.85883 0.98311 0.94772 1.22591 0.95388 0.83635 0.96444 0.93201 1.86445 1.76596 1.20755 1.52104 0.91968 0.92533 0.93784 0.87611 0.92182 0.85560 0.85743 0.85530 0.85539 0.76347 0.90594 0.92502 0.95364 0.90798 0.92781 0.91075 0.94985 0.77717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.43 37.16 0.35 -1.29 16 2 C -0.09 -1.12 5.34 -27.88 -0.15 -1.27 16 3 C -0.02 -0.23 5.17 -104.22 -0.54 -0.77 16 4 C -0.13 -1.23 9.66 -39.64 -0.38 -1.62 16 5 C -0.09 -0.77 10.04 -39.49 -0.40 -1.17 16 6 C -0.14 -1.15 10.03 -39.64 -0.40 -1.55 16 7 C -0.08 -0.83 9.53 -39.19 -0.37 -1.20 16 8 C -0.13 -1.66 5.87 -104.97 -0.62 -2.27 16 9 C 0.55 8.09 7.33 -12.33 -0.09 7.99 16 10 O -0.53 -9.02 11.53 5.32 0.06 -8.95 16 11 N -0.71 -9.99 5.00 -54.71 -0.27 -10.27 16 12 C 0.16 2.66 2.20 -67.89 -0.15 2.51 16 13 H 0.09 1.61 7.57 -51.93 -0.39 1.21 16 14 C -0.14 -2.65 5.51 -26.61 -0.15 -2.80 16 15 C 0.13 2.89 4.17 -3.71 -0.02 2.87 16 16 N -0.60 -13.88 2.74 -172.32 -0.47 -14.35 16 17 C -0.26 -7.05 10.07 -15.06 -0.15 -7.20 16 18 H 0.09 2.46 8.05 -52.49 -0.42 2.04 16 19 C 0.02 0.63 5.27 -17.43 -0.09 0.54 16 20 N -0.91 -28.01 13.97 55.49 0.78 -27.24 16 21 Si 0.88 22.76 24.31 -169.99 -4.13 18.63 16 22 H -0.29 -7.31 6.70 56.52 0.38 -6.94 16 23 H -0.30 -7.96 7.11 56.52 0.40 -7.55 16 24 H -0.27 -6.74 6.29 56.52 0.36 -6.39 16 25 C 0.12 2.24 6.16 -3.71 -0.02 2.22 16 26 C 0.08 1.23 3.38 -26.61 -0.09 1.14 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 O -0.55 -8.53 12.08 -35.23 -0.43 -8.96 16 29 H 0.06 0.91 6.56 -51.93 -0.34 0.57 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.11 1.46 5.85 -51.93 -0.30 1.16 16 33 H 0.06 0.58 7.99 -51.93 -0.41 0.16 16 34 H 0.13 0.92 8.03 -52.48 -0.42 0.50 16 35 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 37 H 0.13 1.07 6.44 -52.49 -0.34 0.74 16 38 H 0.40 4.88 6.31 -40.82 -0.26 4.62 16 39 H 0.08 1.57 7.61 -51.93 -0.40 1.17 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.03 0.64 6.91 -51.93 -0.36 0.28 16 42 H 0.07 1.84 4.30 -51.93 -0.22 1.62 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.38 4.61 9.08 45.56 0.41 5.02 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -32.91 356.65 -8.38 -41.30 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.03 Total: 8.32 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -3.26 Total: -3.85 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.03 Total: -51.86 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.36 Total: -17.91 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.13 Total: 18.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.91 -8.38 -41.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090521333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.715 kcal (2) G-P(sol) polarization free energy of solvation -32.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds