Wall clock time and date at job start Fri Apr 10 2020 14:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47087 * 2 1 4 4 C 1.37983 * 120.07490 * 101.30161 * 3 2 1 5 5 C 1.38330 * 120.14707 * 180.22949 * 4 3 2 6 6 C 1.38384 * 120.28990 * 359.78759 * 5 4 3 7 7 C 1.37928 * 120.14992 * 359.95360 * 6 5 4 8 8 C 1.39554 * 120.07545 * 281.03902 * 3 2 1 9 9 C 1.47847 * 120.14170 * 0.02748 * 8 3 2 10 10 O 1.21548 * 120.00570 * 354.65586 * 9 8 3 11 11 N 1.34780 * 119.99794 * 174.65740 * 9 8 3 12 12 C 1.46506 * 120.00009 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.45634 * 325.02187 * 12 11 9 14 14 C 1.53031 * 109.46056 * 84.99551 * 12 11 9 15 15 C 1.53198 * 109.31253 * 181.37013 * 14 12 11 16 16 N 1.46925 * 108.77625 * 305.36779 * 15 14 12 17 17 C 1.36937 * 120.62952 * 233.58616 * 16 15 14 18 18 H 1.07990 * 120.00024 * 153.69427 * 17 16 15 19 19 C 1.38809 * 119.99808 * 333.68764 * 17 16 15 20 20 N 1.31625 * 120.00307 * 160.88453 * 19 17 16 21 21 Si 1.86806 * 120.00359 * 340.88598 * 19 17 16 22 22 H 1.48495 * 109.47138 * 94.96852 * 21 19 17 23 23 H 1.48496 * 109.47272 * 214.96898 * 21 19 17 24 24 H 1.48502 * 109.46669 * 334.96471 * 21 19 17 25 25 C 1.46922 * 118.73811 * 53.60706 * 16 15 14 26 26 C 1.53035 * 109.44520 * 205.06030 * 12 11 9 27 27 H 1.08997 * 109.50284 * 58.66857 * 26 12 11 28 28 O 1.42904 * 109.50017 * 298.56521 * 26 12 11 29 29 H 1.09000 * 109.47252 * 59.99704 * 1 2 3 30 30 H 1.08995 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46690 * 300.00170 * 1 2 3 32 32 H 1.09004 * 109.46927 * 240.00252 * 2 1 3 33 33 H 1.09000 * 109.47252 * 120.00295 * 2 1 3 34 34 H 1.08004 * 119.92186 * 359.97438 * 4 3 2 35 35 H 1.07997 * 119.85636 * 179.76104 * 5 4 3 36 36 H 1.08004 * 119.92323 * 179.97438 * 6 5 4 37 37 H 1.07991 * 120.07964 * 180.02562 * 7 6 5 38 38 H 0.96999 * 120.00205 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.49932 * 61.42188 * 14 12 11 40 40 H 1.08999 * 109.53168 * 301.33856 * 14 12 11 41 41 H 1.09000 * 109.58069 * 65.15481 * 15 14 12 42 42 H 1.08997 * 109.58597 * 185.57614 * 15 14 12 43 43 H 0.96991 * 120.00383 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.58681 * 186.60628 * 25 16 15 45 45 H 1.08996 * 109.70679 * 66.25005 * 25 16 15 46 46 H 0.96697 * 114.00317 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4834 1.9948 1.1709 5 6 2.9404 3.3004 1.1736 6 6 2.9526 4.0380 0.0027 7 6 2.5094 3.4746 -1.1756 8 6 2.0474 2.1573 -1.1853 9 6 1.5704 1.5470 -2.4446 10 8 1.2556 0.3733 -2.4702 11 7 1.4847 2.2922 -3.5644 12 6 1.0115 1.6876 -4.8122 13 1 1.3526 0.6538 -4.8670 14 6 -0.5180 1.7224 -4.8476 15 6 -1.0101 1.0588 -6.1377 16 7 -0.3649 1.7151 -7.2830 17 6 -1.1152 2.2217 -8.3104 18 1 -0.7337 3.0375 -8.9065 19 6 -2.3660 1.6866 -8.5859 20 7 -3.2365 2.3772 -9.2914 21 14 -2.8141 -0.0137 -7.9551 22 1 -3.5427 0.1122 -6.6674 23 1 -3.6798 -0.6980 -8.9488 24 1 -1.5759 -0.8069 -7.7480 25 6 1.1006 1.8171 -7.3052 26 6 1.5691 2.4722 -6.0020 27 1 2.6584 2.4668 -5.9631 28 8 1.0960 3.8196 -5.9487 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.4758 1.4246 2.0882 35 1 3.2888 3.7462 2.0935 36 1 3.3103 5.0571 0.0117 37 1 2.5198 4.0511 -2.0887 38 1 1.7356 3.2289 -3.5440 39 1 -0.8592 2.7572 -4.8178 40 1 -0.9148 1.1836 -3.9872 41 1 -0.7479 0.0009 -6.1274 42 1 -2.0918 1.1685 -6.2154 43 1 -4.1104 2.0032 -9.4842 44 1 1.4117 2.4272 -8.1532 45 1 1.5370 0.8220 -7.3914 46 1 1.4105 4.3759 -6.6744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090521333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:11 Heat of formation + Delta-G solvation = -55.421621 kcal Electronic energy + Delta-G solvation = -27564.636687 eV Core-core repulsion = 23839.887794 eV Total energy + Delta-G solvation = -3724.748893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61385 -40.22583 -38.95771 -36.78046 -36.01704 -34.70410 -33.95503 -32.65710 -31.47631 -30.74785 -30.29638 -27.04869 -25.21668 -24.41680 -24.33069 -23.61390 -22.03641 -21.47413 -21.04176 -19.12904 -18.60649 -17.76549 -17.59270 -16.92242 -16.69018 -16.19538 -16.04760 -15.96986 -15.89572 -15.68229 -15.14561 -14.95027 -14.69589 -14.60152 -14.20568 -13.96750 -13.93853 -13.76338 -13.53409 -13.16866 -13.13330 -12.78810 -12.65023 -12.49423 -12.45859 -12.13917 -12.06630 -11.85684 -11.72113 -11.67963 -11.39553 -11.11938 -10.68863 -10.50878 -10.12359 -9.86238 -9.64228 -8.94080 -8.16537 -5.47254 -0.09457 0.42278 1.28083 1.37987 1.45684 1.89245 2.12720 2.39797 2.89160 3.01009 3.26665 3.40663 3.69722 3.77692 3.81191 3.89041 3.93202 4.14134 4.16931 4.21690 4.34024 4.40915 4.48126 4.53830 4.56079 4.59356 4.62658 4.73593 4.77397 4.86193 4.91398 4.94466 4.97692 4.98865 5.10853 5.21610 5.28876 5.36022 5.39325 5.52203 5.54445 5.67109 5.83995 5.98768 6.11818 6.57147 6.84365 6.98590 7.23888 7.60069 8.00336 9.03035 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.003548 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.908884 B = 7890.847572 C = 8743.396558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 C -0.039 4.039 4 C -0.135 4.135 5 C -0.087 4.087 6 C -0.135 4.135 7 C -0.087 4.087 8 C -0.158 4.158 9 C 0.549 3.451 10 O -0.561 6.561 11 N -0.705 5.705 12 C 0.168 3.832 13 H 0.087 0.913 14 C -0.124 4.124 15 C 0.126 3.874 16 N -0.609 5.609 17 C -0.234 4.234 18 H 0.064 0.936 19 C -0.037 4.037 20 N -0.958 5.958 21 Si 0.939 3.061 22 H -0.288 1.288 23 H -0.311 1.311 24 H -0.258 1.258 25 C 0.113 3.887 26 C 0.096 3.904 27 H 0.091 0.909 28 O -0.566 6.566 29 H 0.031 0.969 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.139 0.861 38 H 0.411 0.589 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.031 0.969 42 H 0.046 0.954 43 H 0.260 0.740 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.379 2.569 22.143 28.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.129 4.129 3 C -0.040 4.040 4 C -0.153 4.153 5 C -0.105 4.105 6 C -0.153 4.153 7 C -0.106 4.106 8 C -0.161 4.161 9 C 0.338 3.662 10 O -0.441 6.441 11 N -0.357 5.357 12 C 0.063 3.937 13 H 0.105 0.895 14 C -0.165 4.165 15 C 0.001 3.999 16 N -0.333 5.333 17 C -0.364 4.364 18 H 0.081 0.919 19 C -0.231 4.231 20 N -0.605 5.605 21 Si 0.769 3.231 22 H -0.215 1.215 23 H -0.240 1.240 24 H -0.182 1.182 25 C -0.013 4.013 26 C 0.035 3.965 27 H 0.109 0.891 28 O -0.374 6.374 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.165 0.835 35 H 0.175 0.825 36 H 0.173 0.827 37 H 0.157 0.843 38 H 0.249 0.751 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.064 0.936 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 16.747 1.527 22.547 28.128 hybrid contribution -0.724 -0.230 -0.915 1.189 sum 16.024 1.297 21.632 26.952 Atomic orbital electron populations 1.21540 0.95051 1.01558 1.00580 1.20746 0.96230 0.92483 1.03410 1.20217 0.95104 0.96268 0.92364 1.21344 1.00018 0.96423 0.97467 1.21759 0.95782 0.93553 0.99407 1.21459 1.00308 1.01552 0.91940 1.21551 0.96069 0.92870 1.00070 1.19819 1.07026 0.96325 0.92974 1.18754 0.77283 0.85971 0.84176 1.90699 1.50683 1.17223 1.85515 1.45908 1.66418 1.14686 1.08669 1.20749 0.93178 0.97109 0.82677 0.89546 1.22103 0.96403 1.01088 0.96871 1.21298 0.96430 0.94844 0.87378 1.44294 1.02153 1.68210 1.18621 1.18890 0.98623 1.10795 1.08089 0.91871 1.25795 0.97118 1.01026 0.99167 1.69930 1.06648 1.38342 1.45547 0.86049 0.77895 0.83216 0.75906 1.21549 1.24034 1.18231 1.21877 0.82701 0.99608 0.97080 1.22420 0.97301 0.83062 0.93750 0.89114 1.86417 1.77140 1.20818 1.53013 0.94972 0.92408 0.92407 0.90197 0.90007 0.83467 0.82533 0.82729 0.84330 0.75097 0.92127 0.92846 0.95091 0.93562 0.93118 0.90263 0.93639 0.75980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.43 71.98 0.68 -2.49 16 2 C -0.09 -2.10 5.34 29.85 0.16 -1.94 16 3 C -0.04 -0.84 5.17 -19.61 -0.10 -0.94 16 4 C -0.13 -2.10 9.66 22.23 0.21 -1.88 16 5 C -0.09 -1.06 10.04 22.33 0.22 -0.84 16 6 C -0.13 -1.77 10.03 22.23 0.22 -1.54 16 7 C -0.09 -1.53 9.53 22.53 0.21 -1.31 16 8 C -0.16 -3.72 5.87 -20.09 -0.12 -3.83 16 9 C 0.55 15.80 7.33 86.79 0.64 16.43 16 10 O -0.56 -19.35 11.53 -3.87 -0.04 -19.40 16 11 N -0.71 -18.80 5.00 -445.29 -2.23 -21.02 16 12 C 0.17 5.27 2.20 45.01 0.10 5.37 16 13 H 0.09 2.88 7.57 -2.39 -0.02 2.87 16 14 C -0.12 -4.79 5.51 30.67 0.17 -4.62 16 15 C 0.13 5.68 4.17 86.36 0.36 6.04 16 16 N -0.61 -28.07 2.74 -699.10 -1.91 -29.98 16 17 C -0.23 -13.05 10.07 84.03 0.85 -12.21 16 18 H 0.06 3.74 8.05 -2.92 -0.02 3.72 16 19 C -0.04 -2.17 5.27 84.86 0.45 -1.73 16 20 N -0.96 -60.82 13.97 21.65 0.30 -60.51 16 21 Si 0.94 48.23 24.31 68.60 1.67 49.89 16 22 H -0.29 -14.52 6.70 99.48 0.67 -13.85 16 23 H -0.31 -16.17 7.11 99.48 0.71 -15.47 16 24 H -0.26 -12.61 6.29 99.48 0.63 -11.98 16 25 C 0.11 3.93 6.16 86.37 0.53 4.46 16 26 C 0.10 2.67 3.38 30.67 0.10 2.77 16 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 28 O -0.57 -16.18 12.08 -148.98 -1.80 -17.98 16 29 H 0.03 0.96 6.56 -2.39 -0.02 0.94 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 2.26 5.85 -2.38 -0.01 2.25 16 33 H 0.08 1.45 7.99 -2.39 -0.02 1.43 16 34 H 0.15 1.60 8.03 -2.91 -0.02 1.57 16 35 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 36 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 37 H 0.14 1.97 6.44 -2.91 -0.02 1.95 16 38 H 0.41 9.14 6.31 -92.71 -0.59 8.56 16 39 H 0.06 2.51 7.61 -2.39 -0.02 2.49 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.03 1.38 6.91 -2.39 -0.02 1.37 16 42 H 0.05 2.33 4.30 -2.39 -0.01 2.32 16 43 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 44 H 0.08 2.62 7.93 -2.38 -0.02 2.60 16 45 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.39 8.61 9.08 -74.06 -0.67 7.94 16 Total: -1.00 -73.91 356.65 0.30 -73.60 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -0.37 Total: 23.66 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 4.69 Total: 1.74 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -3.84 Total: -111.52 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.84 Total: -37.38 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 1.67 Total: 49.89 kcal Total: -73.91 0.30 -73.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090521333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.180 kcal (2) G-P(sol) polarization free energy of solvation -73.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds