Wall clock time and date at job start Fri Apr 10 2020 14:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37954 * 120.07441 * 2 1 4 4 C 1.38361 * 120.14635 * 180.27909 * 3 2 1 5 5 C 1.38358 * 120.28972 * 359.74346 * 4 3 2 6 6 C 1.37950 * 120.14967 * 0.02801 * 5 4 3 7 7 C 1.50694 * 120.07706 * 179.97438 * 6 5 4 8 8 C 1.39575 * 119.84881 * 359.97193 * 6 5 4 9 9 C 1.47855 * 120.14341 * 179.97438 * 8 6 5 10 10 O 1.21550 * 119.99952 * 90.00345 * 9 8 6 11 11 N 1.34768 * 119.99956 * 269.99838 * 9 8 6 12 12 C 1.46503 * 119.99963 * 179.72504 * 11 9 8 13 13 H 1.08998 * 109.45540 * 325.29817 * 12 11 9 14 14 C 1.53034 * 109.46026 * 85.27632 * 12 11 9 15 15 C 1.53198 * 109.31368 * 58.65703 * 14 12 11 16 16 N 1.46927 * 108.77462 * 54.63110 * 15 14 12 17 17 C 1.36939 * 120.63089 * 126.36996 * 16 15 14 18 18 H 1.07995 * 120.00478 * 207.68438 * 17 16 15 19 19 C 1.38818 * 119.99808 * 27.68148 * 17 16 15 20 20 N 1.31625 * 119.99652 * 17.37664 * 19 17 16 21 21 Si 1.86799 * 120.00153 * 197.37128 * 19 17 16 22 22 H 1.48500 * 109.47166 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46965 * 120.00139 * 21 19 17 24 24 H 1.48500 * 109.47063 * 240.00419 * 21 19 17 25 25 C 1.46919 * 118.74316 * 306.39545 * 16 15 14 26 26 C 1.53041 * 109.45909 * 205.34677 * 12 11 9 27 27 H 1.08999 * 109.49751 * 181.39392 * 26 12 11 28 28 O 1.42902 * 109.49852 * 61.29391 * 26 12 11 29 29 H 1.09005 * 109.47118 * 270.20221 * 1 2 3 30 30 H 1.08996 * 109.47828 * 30.20652 * 1 2 3 31 31 H 1.09003 * 109.47129 * 150.20843 * 1 2 3 32 32 H 1.08002 * 119.92995 * 0.02582 * 3 2 1 33 33 H 1.08005 * 119.85253 * 179.72881 * 4 3 2 34 34 H 1.08006 * 119.92101 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.46989 * 270.01944 * 7 6 5 36 36 H 1.09005 * 109.47168 * 30.01781 * 7 6 5 37 37 H 1.09009 * 109.47163 * 150.01817 * 7 6 5 38 38 H 0.97000 * 120.00021 * 0.02562 * 11 9 8 39 39 H 1.09002 * 109.49602 * 178.60568 * 14 12 11 40 40 H 1.08997 * 109.49753 * 298.70417 * 14 12 11 41 41 H 1.08999 * 109.58770 * 174.41766 * 15 14 12 42 42 H 1.08994 * 109.58484 * 294.84822 * 15 14 12 43 43 H 0.96996 * 119.99366 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58950 * 173.39382 * 25 16 15 45 45 H 1.09002 * 109.58634 * 293.68160 * 25 16 15 46 46 H 0.96702 * 113.99627 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1938 0.0000 4 6 3.5819 1.1956 -0.0058 5 6 4.2812 0.0017 -0.0063 6 6 3.6022 -1.1991 -0.0016 7 6 4.3655 -2.4983 -0.0028 8 6 2.2065 -1.2078 0.0043 9 6 1.4721 -2.4911 0.0088 10 8 1.1746 -3.0174 1.0633 11 7 1.1324 -3.0772 -1.1563 12 6 0.4100 -4.3517 -1.1518 13 1 0.7454 -4.9562 -0.3091 14 6 -1.0916 -4.0862 -1.0235 15 6 -1.5525 -3.2080 -2.1911 16 7 -1.1592 -3.8525 -3.4515 17 6 -2.0858 -4.0944 -4.4303 18 1 -1.9436 -4.9151 -5.1177 19 6 -3.2081 -3.2847 -4.5390 20 7 -3.2285 -2.1062 -3.9530 21 14 -4.6892 -3.8674 -5.5168 22 1 -4.4159 -5.2173 -6.0720 23 1 -5.8765 -3.9298 -4.6268 24 1 -4.9530 -2.9186 -6.6283 25 6 0.2471 -4.2331 -3.6417 26 6 0.6878 -5.0997 -2.4578 27 1 0.1310 -6.0368 -2.4658 28 8 2.0863 -5.3742 -2.5621 29 1 -0.3634 0.0036 1.0277 30 1 -0.3634 0.8880 -0.5170 31 1 -0.3633 -0.8919 -0.5106 32 1 1.6584 2.1292 0.0004 33 1 4.1183 2.1330 -0.0102 34 1 5.3613 0.0101 -0.0113 35 1 4.5456 -2.8130 -1.0307 36 1 5.3190 -2.3601 0.5072 37 1 3.7842 -3.2618 0.5144 38 1 1.3701 -2.6573 -1.9978 39 1 -1.6316 -5.0328 -1.0450 40 1 -1.2914 -3.5742 -0.0822 41 1 -2.6365 -3.0978 -2.1598 42 1 -1.0812 -2.2279 -2.1193 43 1 -4.0126 -1.5403 -4.0293 44 1 0.3505 -4.7991 -4.5674 45 1 0.8649 -3.3364 -3.6907 46 1 2.3351 -5.8481 -3.3675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090579447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:46 Heat of formation + Delta-G solvation = -47.308162 kcal Electronic energy + Delta-G solvation = -28150.984226 eV Core-core repulsion = 24426.587159 eV Total energy + Delta-G solvation = -3724.397067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.39300 -38.93939 -37.53452 -35.45234 -34.00286 -33.57369 -32.27116 -31.48748 -30.11043 -28.62040 -27.53773 -26.63218 -25.38951 -23.43615 -22.28927 -21.82796 -20.68700 -20.41774 -18.72327 -17.68663 -17.07400 -16.51500 -15.98660 -15.69498 -15.30714 -14.95868 -14.49312 -14.27867 -14.10151 -13.83881 -13.66724 -13.38219 -13.20010 -13.09566 -12.98616 -12.70952 -12.58544 -12.28499 -12.01272 -11.82212 -11.69536 -11.58418 -11.36336 -11.20987 -11.02279 -10.92453 -10.68919 -10.38422 -10.22493 -9.98031 -9.86418 -9.53464 -9.44637 -8.73863 -8.62398 -8.58268 -8.52423 -6.80138 -5.89547 -3.33268 1.17867 1.35056 2.91672 3.31056 3.39613 3.41010 3.47316 3.73233 4.34362 4.49975 4.75011 4.79940 4.89435 5.00215 5.24367 5.25965 5.30630 5.40720 5.43490 5.53869 5.56200 5.63685 5.65110 5.69098 5.80274 5.84164 5.89222 5.95470 6.03851 6.11547 6.23545 6.33073 6.40396 6.43189 6.45810 6.53489 6.57688 6.63494 6.67613 6.91821 6.94586 7.25683 7.56239 7.69556 7.87564 7.89897 8.32995 8.53847 9.08936 9.71221 10.26489 11.18623 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.004262 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.100955 B = 6568.779256 C = 7492.386178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.040 4.040 3 C -0.131 4.131 4 C -0.101 4.101 5 C -0.133 4.133 6 C -0.047 4.047 7 C -0.120 4.120 8 C -0.124 4.124 9 C 0.568 3.432 10 O -0.545 6.545 11 N -0.696 5.696 12 C 0.165 3.835 13 H 0.079 0.921 14 C -0.154 4.154 15 C 0.172 3.828 16 N -0.586 5.586 17 C -0.259 4.259 18 H 0.067 0.933 19 C 0.007 3.993 20 N -0.898 5.898 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.118 3.882 26 C 0.076 3.924 27 H 0.066 0.934 28 O -0.570 6.570 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.403 0.597 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.022 0.978 43 H 0.254 0.746 44 H 0.058 0.942 45 H 0.022 0.978 46 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.890 2.641 5.748 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.041 4.041 3 C -0.149 4.149 4 C -0.119 4.119 5 C -0.151 4.151 6 C -0.048 4.048 7 C -0.177 4.177 8 C -0.127 4.127 9 C 0.354 3.646 10 O -0.423 6.423 11 N -0.346 5.346 12 C 0.060 3.940 13 H 0.097 0.903 14 C -0.194 4.194 15 C 0.046 3.954 16 N -0.310 5.310 17 C -0.388 4.388 18 H 0.085 0.915 19 C -0.193 4.193 20 N -0.542 5.542 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C -0.009 4.009 26 C 0.016 3.984 27 H 0.084 0.916 28 O -0.375 6.375 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.239 0.761 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.040 0.960 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.040 0.960 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 12.532 2.663 7.046 14.621 hybrid contribution -0.721 -0.195 -1.485 1.662 sum 11.810 2.468 5.561 13.285 Atomic orbital electron populations 1.20949 0.90289 1.04136 1.02838 1.19963 0.96394 0.91643 0.96091 1.20959 0.94226 0.97347 1.02342 1.21210 0.94213 0.97951 0.98535 1.20897 0.99718 0.91657 1.02873 1.19878 0.91908 0.95924 0.97078 1.20867 0.99733 0.94137 1.02943 1.19761 0.93477 0.93339 1.06145 1.18150 0.78284 0.84022 0.84159 1.90760 1.55512 1.64792 1.31215 1.45997 1.56870 1.23446 1.08316 1.20859 0.92587 0.83745 0.96807 0.90324 1.22603 0.93378 1.02325 1.01136 1.20815 1.01294 0.91636 0.81637 1.44003 1.01686 1.70596 1.14747 1.19197 1.00513 1.08969 1.10125 0.91547 1.25037 1.00198 0.94702 0.99330 1.70041 1.28941 1.08086 1.47140 0.86229 0.82986 0.78208 0.79350 1.20228 1.21458 1.21675 1.21535 0.87962 0.96205 0.95227 1.22735 0.81011 0.98122 0.96570 0.91569 1.86479 1.24657 1.80178 1.46149 0.90702 0.90799 0.90466 0.85608 0.85901 0.85787 0.90464 0.91280 0.91120 0.76095 0.91425 0.91850 0.89202 0.95956 0.93554 0.92303 0.95994 0.78018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.62 36.00 0.35 -1.50 16 2 C -0.04 -0.59 5.91 -104.23 -0.62 -1.21 16 3 C -0.13 -1.60 9.69 -39.64 -0.38 -1.98 16 4 C -0.10 -1.11 10.04 -39.49 -0.40 -1.50 16 5 C -0.13 -1.53 9.69 -39.64 -0.38 -1.91 16 6 C -0.05 -0.64 5.91 -104.23 -0.62 -1.26 16 7 C -0.12 -1.47 9.62 36.00 0.35 -1.13 16 8 C -0.12 -1.95 5.63 -104.96 -0.59 -2.54 16 9 C 0.57 10.07 4.15 -12.33 -0.05 10.02 16 10 O -0.54 -11.26 16.76 5.32 0.09 -11.17 16 11 N -0.70 -11.94 4.15 -54.71 -0.23 -12.17 16 12 C 0.16 2.93 2.47 -67.89 -0.17 2.76 16 13 H 0.08 1.47 7.57 -51.93 -0.39 1.07 16 14 C -0.15 -2.98 5.77 -26.61 -0.15 -3.13 16 15 C 0.17 3.88 5.05 -3.71 -0.02 3.86 16 16 N -0.59 -13.61 2.99 -172.32 -0.52 -14.13 16 17 C -0.26 -6.70 9.59 -15.06 -0.14 -6.85 16 18 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 19 C 0.01 0.17 4.91 -17.43 -0.09 0.09 16 20 N -0.90 -24.92 11.19 55.49 0.62 -24.30 16 21 Si 0.90 20.90 29.59 -169.99 -5.03 15.87 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.12 2.25 5.84 -3.71 -0.02 2.23 16 26 C 0.08 1.27 3.36 -26.61 -0.09 1.18 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 O -0.57 -8.29 13.21 -35.23 -0.47 -8.76 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 31 H 0.08 1.31 6.37 -51.93 -0.33 0.98 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 37 H 0.07 1.01 7.08 -51.92 -0.37 0.65 16 38 H 0.40 6.88 6.86 -40.82 -0.28 6.60 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.09 2.32 6.03 -51.93 -0.31 2.00 16 42 H 0.02 0.53 7.02 -51.93 -0.36 0.16 16 43 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 45 H 0.02 0.43 6.65 -51.93 -0.35 0.08 16 46 H 0.37 3.87 9.08 45.56 0.41 4.28 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -30.77 368.32 -9.17 -39.94 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -6.16 Total: 12.04 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.03 Total: -2.87 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.12 Total: -50.60 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.38 Total: -19.93 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.77 -9.17 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090579447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.368 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds