Wall clock time and date at job start Fri Apr 10 2020 14:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37954 * 120.07441 * 2 1 4 4 C 1.38361 * 120.14635 * 180.27909 * 3 2 1 5 5 C 1.38358 * 120.28972 * 359.74346 * 4 3 2 6 6 C 1.37950 * 120.14967 * 0.02801 * 5 4 3 7 7 C 1.50694 * 120.07706 * 179.97438 * 6 5 4 8 8 C 1.39575 * 119.84881 * 359.97193 * 6 5 4 9 9 C 1.47855 * 120.14341 * 179.97438 * 8 6 5 10 10 O 1.21550 * 119.99952 * 90.00345 * 9 8 6 11 11 N 1.34768 * 119.99956 * 269.99838 * 9 8 6 12 12 C 1.46503 * 119.99963 * 179.72504 * 11 9 8 13 13 H 1.08998 * 109.45540 * 325.29817 * 12 11 9 14 14 C 1.53034 * 109.46026 * 85.27632 * 12 11 9 15 15 C 1.53198 * 109.31368 * 58.65703 * 14 12 11 16 16 N 1.46927 * 108.77462 * 54.63110 * 15 14 12 17 17 C 1.36939 * 120.63089 * 126.36996 * 16 15 14 18 18 H 1.07995 * 120.00478 * 207.68438 * 17 16 15 19 19 C 1.38818 * 119.99808 * 27.68148 * 17 16 15 20 20 N 1.31625 * 119.99652 * 17.37664 * 19 17 16 21 21 Si 1.86799 * 120.00153 * 197.37128 * 19 17 16 22 22 H 1.48500 * 109.47166 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46965 * 120.00139 * 21 19 17 24 24 H 1.48500 * 109.47063 * 240.00419 * 21 19 17 25 25 C 1.46919 * 118.74316 * 306.39545 * 16 15 14 26 26 C 1.53041 * 109.45909 * 205.34677 * 12 11 9 27 27 H 1.08999 * 109.49751 * 181.39392 * 26 12 11 28 28 O 1.42902 * 109.49852 * 61.29391 * 26 12 11 29 29 H 1.09005 * 109.47118 * 270.20221 * 1 2 3 30 30 H 1.08996 * 109.47828 * 30.20652 * 1 2 3 31 31 H 1.09003 * 109.47129 * 150.20843 * 1 2 3 32 32 H 1.08002 * 119.92995 * 0.02582 * 3 2 1 33 33 H 1.08005 * 119.85253 * 179.72881 * 4 3 2 34 34 H 1.08006 * 119.92101 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.46989 * 270.01944 * 7 6 5 36 36 H 1.09005 * 109.47168 * 30.01781 * 7 6 5 37 37 H 1.09009 * 109.47163 * 150.01817 * 7 6 5 38 38 H 0.97000 * 120.00021 * 0.02562 * 11 9 8 39 39 H 1.09002 * 109.49602 * 178.60568 * 14 12 11 40 40 H 1.08997 * 109.49753 * 298.70417 * 14 12 11 41 41 H 1.08999 * 109.58770 * 174.41766 * 15 14 12 42 42 H 1.08994 * 109.58484 * 294.84822 * 15 14 12 43 43 H 0.96996 * 119.99366 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58950 * 173.39382 * 25 16 15 45 45 H 1.09002 * 109.58634 * 293.68160 * 25 16 15 46 46 H 0.96702 * 113.99627 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1938 0.0000 4 6 3.5819 1.1956 -0.0058 5 6 4.2812 0.0017 -0.0063 6 6 3.6022 -1.1991 -0.0016 7 6 4.3655 -2.4983 -0.0028 8 6 2.2065 -1.2078 0.0043 9 6 1.4721 -2.4911 0.0088 10 8 1.1746 -3.0174 1.0633 11 7 1.1324 -3.0772 -1.1563 12 6 0.4100 -4.3517 -1.1518 13 1 0.7454 -4.9562 -0.3091 14 6 -1.0916 -4.0862 -1.0235 15 6 -1.5525 -3.2080 -2.1911 16 7 -1.1592 -3.8525 -3.4515 17 6 -2.0858 -4.0944 -4.4303 18 1 -1.9436 -4.9151 -5.1177 19 6 -3.2081 -3.2847 -4.5390 20 7 -3.2285 -2.1062 -3.9530 21 14 -4.6892 -3.8674 -5.5168 22 1 -4.4159 -5.2173 -6.0720 23 1 -5.8765 -3.9298 -4.6268 24 1 -4.9530 -2.9186 -6.6283 25 6 0.2471 -4.2331 -3.6417 26 6 0.6878 -5.0997 -2.4578 27 1 0.1310 -6.0368 -2.4658 28 8 2.0863 -5.3742 -2.5621 29 1 -0.3634 0.0036 1.0277 30 1 -0.3634 0.8880 -0.5170 31 1 -0.3633 -0.8919 -0.5106 32 1 1.6584 2.1292 0.0004 33 1 4.1183 2.1330 -0.0102 34 1 5.3613 0.0101 -0.0113 35 1 4.5456 -2.8130 -1.0307 36 1 5.3190 -2.3601 0.5072 37 1 3.7842 -3.2618 0.5144 38 1 1.3701 -2.6573 -1.9978 39 1 -1.6316 -5.0328 -1.0450 40 1 -1.2914 -3.5742 -0.0822 41 1 -2.6365 -3.0978 -2.1598 42 1 -1.0812 -2.2279 -2.1193 43 1 -4.0126 -1.5403 -4.0293 44 1 0.3505 -4.7991 -4.5674 45 1 0.8649 -3.3364 -3.6907 46 1 2.3351 -5.8481 -3.3675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090579447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:37:45 Heat of formation + Delta-G solvation = -67.774992 kcal Electronic energy + Delta-G solvation = -28151.871734 eV Core-core repulsion = 24426.587159 eV Total energy + Delta-G solvation = -3725.284575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67748 -40.20748 -38.91461 -36.95090 -35.59872 -34.58636 -33.68201 -32.95588 -31.72189 -30.18418 -28.67452 -27.60911 -27.20572 -24.71113 -23.83870 -23.52370 -21.69182 -21.67826 -20.31565 -19.04219 -18.62176 -17.98043 -17.16517 -16.99497 -16.83387 -16.44717 -15.90610 -15.73163 -15.56993 -15.23218 -14.94041 -14.74506 -14.59762 -14.35770 -14.13540 -13.91743 -13.82362 -13.64500 -13.56141 -13.26452 -13.03231 -12.90295 -12.77007 -12.58250 -12.45236 -12.32050 -12.15570 -12.02696 -11.97493 -11.84292 -11.33016 -11.05214 -10.90790 -10.51976 -10.08444 -9.76308 -9.55104 -8.71688 -7.89412 -5.35153 0.17097 0.38133 1.46362 1.49857 1.54355 1.58742 2.18833 2.49236 2.71196 3.13286 3.27139 3.63795 3.66388 3.80142 3.83435 3.91239 4.03654 4.04631 4.22419 4.35025 4.36363 4.40126 4.49840 4.53146 4.62067 4.65898 4.71802 4.72061 4.82998 4.86427 4.89192 4.92683 5.02015 5.09605 5.14319 5.25145 5.39853 5.47049 5.47238 5.51631 5.56489 5.63623 5.69952 6.00644 6.35085 6.47309 6.88149 7.11740 7.14955 7.80356 8.31846 9.17019 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.004262 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.100955 B = 6568.779256 C = 7492.386178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.062 4.062 3 C -0.133 4.133 4 C -0.092 4.092 5 C -0.128 4.128 6 C -0.060 4.060 7 C -0.115 4.115 8 C -0.154 4.154 9 C 0.572 3.428 10 O -0.582 6.582 11 N -0.690 5.690 12 C 0.166 3.834 13 H 0.074 0.926 14 C -0.141 4.141 15 C 0.187 3.813 16 N -0.600 5.600 17 C -0.264 4.264 18 H 0.072 0.928 19 C -0.045 4.045 20 N -0.930 5.930 21 Si 0.963 3.037 22 H -0.265 1.265 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.119 3.881 26 C 0.097 3.903 27 H 0.072 0.928 28 O -0.569 6.569 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.148 0.852 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.042 0.958 38 H 0.404 0.596 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.005 0.995 43 H 0.249 0.751 44 H 0.070 0.930 45 H 0.021 0.979 46 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.282 2.993 5.191 16.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.062 4.062 3 C -0.151 4.151 4 C -0.110 4.110 5 C -0.146 4.146 6 C -0.060 4.060 7 C -0.172 4.172 8 C -0.157 4.157 9 C 0.360 3.640 10 O -0.463 6.463 11 N -0.340 5.340 12 C 0.061 3.939 13 H 0.092 0.908 14 C -0.181 4.181 15 C 0.061 3.939 16 N -0.325 5.325 17 C -0.394 4.394 18 H 0.090 0.910 19 C -0.241 4.241 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.189 1.189 23 H -0.221 1.221 24 H -0.221 1.221 25 C -0.007 4.007 26 C 0.036 3.964 27 H 0.090 0.910 28 O -0.376 6.376 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.166 0.834 33 H 0.178 0.822 34 H 0.175 0.825 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.061 0.939 38 H 0.240 0.760 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.023 0.977 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.039 0.961 46 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 14.963 2.985 6.458 16.568 hybrid contribution -1.360 -0.268 -1.317 1.912 sum 13.603 2.717 5.140 14.793 Atomic orbital electron populations 1.20873 0.91245 1.03125 1.02537 1.20053 0.96028 0.92495 0.97643 1.21265 0.95250 0.97094 1.01505 1.21673 0.93679 0.99414 0.96199 1.21303 1.01396 0.90774 1.01126 1.20133 0.91095 0.97510 0.97289 1.20849 1.00301 0.92829 1.03210 1.19757 0.94599 0.92341 1.08991 1.18541 0.77556 0.84491 0.83454 1.90719 1.57144 1.66064 1.32385 1.45947 1.56492 1.23164 1.08363 1.20761 0.91284 0.84286 0.97549 0.90796 1.22400 0.94872 1.01582 0.99250 1.20483 0.98886 0.91640 0.82917 1.44164 1.03294 1.70636 1.14404 1.19539 1.01096 1.08650 1.10094 0.90992 1.25739 1.02623 0.94879 1.00822 1.70184 1.29252 1.09201 1.48939 0.85273 0.79717 0.78078 0.77743 1.18903 1.22053 1.22069 1.21660 0.85589 0.96614 0.96873 1.22317 0.82280 0.97445 0.94326 0.90999 1.86453 1.22849 1.80563 1.47768 0.90759 0.89491 0.93650 0.83447 0.82157 0.82476 0.89941 0.88586 0.93920 0.76011 0.91012 0.92604 0.92724 0.97674 0.94136 0.91151 0.96114 0.75462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.72 9.62 71.23 0.69 -3.04 16 2 C -0.06 -1.80 5.91 -19.61 -0.12 -1.92 16 3 C -0.13 -2.98 9.69 22.23 0.22 -2.77 16 4 C -0.09 -1.67 10.04 22.33 0.22 -1.44 16 5 C -0.13 -2.50 9.69 22.23 0.22 -2.28 16 6 C -0.06 -1.54 5.91 -19.61 -0.12 -1.65 16 7 C -0.12 -2.66 9.62 71.23 0.69 -1.98 16 8 C -0.15 -4.87 5.63 -20.09 -0.11 -4.98 16 9 C 0.57 20.99 4.15 86.79 0.36 21.35 16 10 O -0.58 -25.14 16.76 -3.87 -0.06 -25.21 16 11 N -0.69 -24.29 4.15 -445.29 -1.85 -26.13 16 12 C 0.17 5.98 2.47 45.02 0.11 6.09 16 13 H 0.07 2.78 7.57 -2.39 -0.02 2.77 16 14 C -0.14 -5.64 5.77 30.67 0.18 -5.46 16 15 C 0.19 8.79 5.05 86.36 0.44 9.22 16 16 N -0.60 -28.16 2.99 -699.10 -2.09 -30.25 16 17 C -0.26 -13.69 9.59 84.03 0.81 -12.88 16 18 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 19 C -0.04 -2.39 4.91 84.86 0.42 -1.98 16 20 N -0.93 -53.21 11.19 21.65 0.24 -52.97 16 21 Si 0.96 43.41 29.59 68.60 2.03 45.44 16 22 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 C 0.12 4.43 5.84 86.37 0.50 4.94 16 26 C 0.10 3.13 3.36 30.67 0.10 3.23 16 27 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 28 O -0.57 -15.33 13.21 -148.98 -1.97 -17.30 16 29 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.09 2.33 8.09 -2.39 -0.02 2.31 16 31 H 0.04 1.66 6.37 -2.39 -0.02 1.64 16 32 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 34 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.10 1.64 8.09 -2.38 -0.02 1.62 16 37 H 0.04 1.22 7.08 -2.38 -0.02 1.20 16 38 H 0.40 14.06 6.86 -92.71 -0.64 13.42 16 39 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 2.96 6.03 -2.39 -0.01 2.95 16 42 H 0.01 0.26 7.02 -2.39 -0.02 0.24 16 43 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 44 H 0.07 2.45 7.93 -2.39 -0.02 2.43 16 45 H 0.02 0.80 6.65 -2.39 -0.02 0.78 16 46 H 0.40 7.00 9.08 -74.06 -0.67 6.33 16 Total: -1.00 -68.53 368.32 0.59 -67.94 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: -0.30 Total: 34.03 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 4.60 Total: 4.46 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -3.70 Total: -109.36 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -2.03 Total: -42.51 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -68.53 0.59 -67.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090579447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.162 kcal (2) G-P(sol) polarization free energy of solvation -68.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds