Wall clock time and date at job start Fri Apr 10 2020 14:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50705 * 109.47401 * 2 1 4 4 C 1.38355 * 119.85570 * 89.99807 * 3 2 1 5 5 C 1.37952 * 120.14550 * 179.97438 * 4 3 2 6 6 C 1.39576 * 119.85228 * 0.27484 * 5 4 3 7 7 C 1.47842 * 120.14448 * 179.72596 * 6 5 4 8 8 O 1.21554 * 120.00100 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99968 * 180.02562 * 7 6 5 10 10 C 1.46509 * 119.99908 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.45928 * 325.02219 * 10 9 7 12 12 C 1.53036 * 109.45974 * 85.00103 * 10 9 7 13 13 C 1.53195 * 109.31179 * 181.38663 * 12 10 9 14 14 N 1.46926 * 108.77435 * 305.36355 * 13 12 10 15 15 C 1.36936 * 120.62996 * 233.63484 * 14 13 12 16 16 H 1.08004 * 120.00150 * 151.82552 * 15 14 13 17 17 C 1.38807 * 119.99812 * 331.82095 * 15 14 13 18 18 N 1.31622 * 120.00340 * 343.06837 * 17 15 14 19 19 Si 1.86804 * 120.00123 * 163.07225 * 17 15 14 20 20 H 1.48501 * 109.46923 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47101 * 119.99826 * 19 17 15 22 22 H 1.48494 * 109.47094 * 240.00085 * 19 17 15 23 23 C 1.46923 * 118.74040 * 53.60569 * 14 13 12 24 24 C 1.53041 * 109.45601 * 205.06952 * 10 9 7 25 25 H 1.08997 * 109.49902 * 298.55944 * 24 10 9 26 26 O 1.42900 * 109.50070 * 58.66353 * 24 10 9 27 27 C 1.39578 * 119.71014 * 359.43080 * 6 5 4 28 28 C 1.37960 * 119.85145 * 0.59042 * 27 6 5 29 29 H 1.09000 * 109.47782 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47094 * 300.00512 * 1 2 3 31 31 H 1.08999 * 109.46980 * 59.99823 * 1 2 3 32 32 H 1.08998 * 109.47366 * 239.99587 * 2 1 3 33 33 H 1.09003 * 109.47027 * 119.99663 * 2 1 3 34 34 H 1.08003 * 119.92877 * 0.02562 * 4 3 2 35 35 H 1.08004 * 120.07598 * 180.02562 * 5 4 3 36 36 H 0.96999 * 120.00196 * 0.02562 * 9 7 6 37 37 H 1.09004 * 109.49850 * 301.33345 * 12 10 9 38 38 H 1.08992 * 109.49718 * 61.39999 * 12 10 9 39 39 H 1.08993 * 109.58556 * 65.14981 * 13 12 10 40 40 H 1.08999 * 109.58523 * 185.57874 * 13 12 10 41 41 H 0.97000 * 120.00211 * 179.97438 * 18 17 15 42 42 H 1.09009 * 109.58570 * 66.18243 * 23 14 13 43 43 H 1.09002 * 109.59367 * 186.46202 * 23 14 13 44 44 H 0.96695 * 113.99743 * 179.97438 * 26 24 10 45 45 H 1.08000 * 120.07403 * 180.27671 * 27 6 5 46 46 H 1.07994 * 119.92557 * 179.70344 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0702 1.1999 5 6 2.7223 3.3706 1.2069 6 6 2.9511 4.0331 -0.0001 7 6 3.4387 5.4288 -0.0002 8 8 3.6408 6.0020 1.0525 9 7 3.6581 6.0660 -1.1674 10 6 4.1407 7.4493 -1.1674 11 1 3.7060 7.9856 -0.3239 12 6 5.6662 7.4570 -1.0451 13 6 6.1644 8.9052 -1.0105 14 7 5.6502 9.6104 -2.1925 15 6 6.5022 10.2747 -3.0341 16 1 6.2480 10.3925 -4.0771 17 6 7.6924 10.7966 -2.5465 18 7 7.8593 10.9558 -1.2506 19 14 9.0573 11.2732 -3.7294 20 1 8.6231 10.9984 -5.1227 21 1 9.3579 12.7199 -3.5814 22 1 10.2756 10.4808 -3.4246 23 6 4.2048 9.5889 -2.4548 24 6 3.7285 8.1330 -2.4730 25 1 4.1830 7.6122 -3.3157 26 8 2.3056 8.0981 -2.6011 27 6 2.7233 3.3702 -1.2071 28 6 2.2625 2.0698 -1.2000 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.0811 1.5576 2.1332 35 1 2.9016 3.8763 2.1443 36 1 3.4957 5.6089 -2.0074 37 1 5.9601 6.9492 -0.1264 38 1 6.1024 6.9420 -1.9009 39 1 5.8021 9.3948 -0.1067 40 1 7.2542 8.9171 -1.0233 41 1 8.6912 11.3202 -0.9099 42 1 3.6826 10.1344 -1.6686 43 1 4.0013 10.0542 -3.4193 44 1 1.9731 8.5152 -3.4077 45 1 2.9026 3.8757 -2.1445 46 1 2.0813 1.5574 -2.1332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090773213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:19 Heat of formation + Delta-G solvation = -49.559072 kcal Electronic energy + Delta-G solvation = -26521.306345 eV Core-core repulsion = 22796.811671 eV Total energy + Delta-G solvation = -3724.494674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.29077 -38.99573 -37.75655 -35.41390 -34.43970 -34.28385 -32.03798 -31.12339 -30.34775 -29.46377 -28.44573 -25.48480 -24.45742 -22.84911 -22.51971 -22.08729 -21.41532 -20.09717 -19.55833 -17.94032 -17.03511 -16.57371 -16.20714 -15.74316 -15.27696 -15.04951 -14.79977 -14.63644 -14.09896 -13.96808 -13.91403 -13.69484 -13.59197 -13.35003 -13.21078 -12.76260 -12.64781 -12.30289 -12.16999 -11.91287 -11.60642 -11.55552 -11.34354 -11.12150 -11.08568 -10.90010 -10.67083 -10.32472 -10.25866 -9.96971 -9.84590 -9.72288 -9.43544 -9.17596 -8.96245 -8.70333 -8.45168 -6.77643 -5.85611 -3.30315 0.73600 1.19406 2.92378 3.32369 3.36709 3.41119 3.43121 3.80733 4.35307 4.39756 4.49517 4.51722 4.73186 4.79644 4.92182 4.99563 5.15857 5.19051 5.28400 5.29134 5.32458 5.47562 5.53215 5.54991 5.59769 5.68113 5.77010 5.80631 5.85056 5.96826 6.09537 6.13191 6.23398 6.31874 6.33105 6.47617 6.53302 6.66974 6.69991 6.76944 6.87757 7.28716 7.60227 7.72450 7.74684 7.91204 8.37014 8.44097 9.12344 9.74674 10.30765 11.22945 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026086 B = 0.002555 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.115294 B =10954.408728 C =11153.881993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.064 4.064 4 C -0.127 4.127 5 C -0.059 4.059 6 C -0.131 4.131 7 C 0.554 3.446 8 O -0.539 6.539 9 N -0.710 5.710 10 C 0.163 3.837 11 H 0.089 0.911 12 C -0.147 4.147 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.259 4.259 16 H 0.067 0.933 17 C 0.005 3.995 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.056 0.944 26 O -0.571 6.571 27 C -0.083 4.083 28 C -0.127 4.127 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.395 0.605 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.024 0.976 40 H 0.093 0.907 41 H 0.255 0.745 42 H 0.029 0.971 43 H 0.060 0.940 44 H 0.374 0.626 45 H 0.126 0.874 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.996 -20.274 -0.670 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.064 4.064 4 C -0.145 4.145 5 C -0.077 4.077 6 C -0.134 4.134 7 C 0.341 3.659 8 O -0.417 6.417 9 N -0.360 5.360 10 C 0.059 3.941 11 H 0.107 0.893 12 C -0.187 4.187 13 C 0.045 3.955 14 N -0.312 5.312 15 C -0.388 4.388 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.542 5.542 19 Si 0.734 3.266 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.214 1.214 23 C -0.007 4.007 24 C 0.019 3.981 25 H 0.074 0.926 26 O -0.375 6.375 27 C -0.101 4.101 28 C -0.145 4.145 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.229 0.771 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.079 0.921 44 H 0.220 0.780 45 H 0.144 0.856 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.652 -20.058 0.729 23.726 hybrid contribution 0.666 0.414 -1.543 1.731 sum -11.986 -19.645 -0.814 23.027 Atomic orbital electron populations 1.21751 0.94486 1.01798 1.02441 1.20601 0.96356 0.92471 1.03082 1.20102 0.96928 0.96158 0.93216 1.21006 1.01008 0.94765 0.97758 1.21295 0.94652 0.93860 0.97933 1.20073 1.04368 0.94587 0.94391 1.18246 0.77681 0.85823 0.84177 1.90773 1.52233 1.67575 1.31149 1.46016 1.66945 1.15092 1.07936 1.21032 0.95115 0.80071 0.97884 0.89325 1.22608 0.92837 1.02043 1.01199 1.20833 1.00578 0.85610 0.88471 1.44051 0.99655 1.58995 1.28524 1.19190 0.99769 1.29708 0.90151 0.91509 1.25092 1.00202 0.98374 0.95800 1.70044 1.25567 1.47227 1.11367 0.86206 0.82185 0.77809 0.80434 1.20229 1.21638 1.21449 1.21527 0.87370 0.92099 0.99684 1.22779 0.80000 0.98941 0.96400 0.92610 1.86489 1.21726 1.82390 1.46908 1.21322 0.96925 0.94720 0.97165 1.20946 1.01007 0.94758 0.97752 0.92307 0.92422 0.92426 0.90832 0.90823 0.85541 0.84611 0.77070 0.91876 0.92339 0.95748 0.88861 0.93466 0.95297 0.92132 0.78007 0.85607 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.15 0.37 -0.49 16 2 C -0.09 -0.55 6.06 -27.88 -0.17 -0.72 16 3 C -0.06 -0.56 5.14 -104.53 -0.54 -1.10 16 4 C -0.13 -1.24 9.68 -39.64 -0.38 -1.62 16 5 C -0.06 -0.72 9.60 -39.19 -0.38 -1.10 16 6 C -0.13 -1.76 5.87 -104.97 -0.62 -2.37 16 7 C 0.55 9.25 7.74 -12.33 -0.10 9.16 16 8 O -0.54 -11.01 16.01 5.32 0.09 -10.92 16 9 N -0.71 -11.11 4.87 -54.70 -0.27 -11.38 16 10 C 0.16 3.00 2.12 -67.89 -0.14 2.85 16 11 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 12 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 13 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 14 N -0.59 -14.43 2.99 -172.32 -0.52 -14.95 16 15 C -0.26 -6.91 9.58 -15.06 -0.14 -7.05 16 16 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 17 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 18 N -0.90 -25.88 11.20 55.49 0.62 -25.26 16 19 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.12 2.46 6.14 -3.71 -0.02 2.44 16 24 C 0.08 1.36 3.14 -26.61 -0.08 1.28 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 O -0.57 -8.59 13.16 -35.23 -0.46 -9.05 16 27 C -0.08 -0.88 9.54 -39.18 -0.37 -1.26 16 28 C -0.13 -1.15 9.68 -39.64 -0.38 -1.53 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.14 1.71 7.65 -52.48 -0.40 1.31 16 36 H 0.39 5.09 6.64 -40.82 -0.27 4.82 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 2.49 6.06 -51.93 -0.31 2.17 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 43 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 44 H 0.37 4.00 9.08 45.56 0.41 4.41 16 45 H 0.13 1.13 6.41 -52.49 -0.34 0.79 16 46 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -32.55 374.15 -9.48 -42.03 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.33 Total: 8.09 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -3.22 Total: -0.45 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.16 Total: -51.59 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.38 Total: -19.97 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.55 -9.48 -42.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090773213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.528 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds