Wall clock time and date at job start Fri Apr 10 2020 14:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50705 * 109.47401 * 2 1 4 4 C 1.38355 * 119.85570 * 89.99807 * 3 2 1 5 5 C 1.37952 * 120.14550 * 179.97438 * 4 3 2 6 6 C 1.39576 * 119.85228 * 0.27484 * 5 4 3 7 7 C 1.47842 * 120.14448 * 179.72596 * 6 5 4 8 8 O 1.21554 * 120.00100 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99968 * 180.02562 * 7 6 5 10 10 C 1.46509 * 119.99908 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.45928 * 325.02219 * 10 9 7 12 12 C 1.53036 * 109.45974 * 85.00103 * 10 9 7 13 13 C 1.53195 * 109.31179 * 181.38663 * 12 10 9 14 14 N 1.46926 * 108.77435 * 305.36355 * 13 12 10 15 15 C 1.36936 * 120.62996 * 233.63484 * 14 13 12 16 16 H 1.08004 * 120.00150 * 151.82552 * 15 14 13 17 17 C 1.38807 * 119.99812 * 331.82095 * 15 14 13 18 18 N 1.31622 * 120.00340 * 343.06837 * 17 15 14 19 19 Si 1.86804 * 120.00123 * 163.07225 * 17 15 14 20 20 H 1.48501 * 109.46923 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47101 * 119.99826 * 19 17 15 22 22 H 1.48494 * 109.47094 * 240.00085 * 19 17 15 23 23 C 1.46923 * 118.74040 * 53.60569 * 14 13 12 24 24 C 1.53041 * 109.45601 * 205.06952 * 10 9 7 25 25 H 1.08997 * 109.49902 * 298.55944 * 24 10 9 26 26 O 1.42900 * 109.50070 * 58.66353 * 24 10 9 27 27 C 1.39578 * 119.71014 * 359.43080 * 6 5 4 28 28 C 1.37960 * 119.85145 * 0.59042 * 27 6 5 29 29 H 1.09000 * 109.47782 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47094 * 300.00512 * 1 2 3 31 31 H 1.08999 * 109.46980 * 59.99823 * 1 2 3 32 32 H 1.08998 * 109.47366 * 239.99587 * 2 1 3 33 33 H 1.09003 * 109.47027 * 119.99663 * 2 1 3 34 34 H 1.08003 * 119.92877 * 0.02562 * 4 3 2 35 35 H 1.08004 * 120.07598 * 180.02562 * 5 4 3 36 36 H 0.96999 * 120.00196 * 0.02562 * 9 7 6 37 37 H 1.09004 * 109.49850 * 301.33345 * 12 10 9 38 38 H 1.08992 * 109.49718 * 61.39999 * 12 10 9 39 39 H 1.08993 * 109.58556 * 65.14981 * 13 12 10 40 40 H 1.08999 * 109.58523 * 185.57874 * 13 12 10 41 41 H 0.97000 * 120.00211 * 179.97438 * 18 17 15 42 42 H 1.09009 * 109.58570 * 66.18243 * 23 14 13 43 43 H 1.09002 * 109.59367 * 186.46202 * 23 14 13 44 44 H 0.96695 * 113.99743 * 179.97438 * 26 24 10 45 45 H 1.08000 * 120.07403 * 180.27671 * 27 6 5 46 46 H 1.07994 * 119.92557 * 179.70344 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0702 1.1999 5 6 2.7223 3.3706 1.2069 6 6 2.9511 4.0331 -0.0001 7 6 3.4387 5.4288 -0.0002 8 8 3.6408 6.0020 1.0525 9 7 3.6581 6.0660 -1.1674 10 6 4.1407 7.4493 -1.1674 11 1 3.7060 7.9856 -0.3239 12 6 5.6662 7.4570 -1.0451 13 6 6.1644 8.9052 -1.0105 14 7 5.6502 9.6104 -2.1925 15 6 6.5022 10.2747 -3.0341 16 1 6.2480 10.3925 -4.0771 17 6 7.6924 10.7966 -2.5465 18 7 7.8593 10.9558 -1.2506 19 14 9.0573 11.2732 -3.7294 20 1 8.6231 10.9984 -5.1227 21 1 9.3579 12.7199 -3.5814 22 1 10.2756 10.4808 -3.4246 23 6 4.2048 9.5889 -2.4548 24 6 3.7285 8.1330 -2.4730 25 1 4.1830 7.6122 -3.3157 26 8 2.3056 8.0981 -2.6011 27 6 2.7233 3.3702 -1.2071 28 6 2.2625 2.0698 -1.2000 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.0811 1.5576 2.1332 35 1 2.9016 3.8763 2.1443 36 1 3.4957 5.6089 -2.0074 37 1 5.9601 6.9492 -0.1264 38 1 6.1024 6.9420 -1.9009 39 1 5.8021 9.3948 -0.1067 40 1 7.2542 8.9171 -1.0233 41 1 8.6912 11.3202 -0.9099 42 1 3.6826 10.1344 -1.6686 43 1 4.0013 10.0542 -3.4193 44 1 1.9731 8.5152 -3.4077 45 1 2.9026 3.8757 -2.1445 46 1 2.0813 1.5574 -2.1332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090773213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:18 Heat of formation + Delta-G solvation = -71.924219 kcal Electronic energy + Delta-G solvation = -26522.276171 eV Core-core repulsion = 22796.811671 eV Total energy + Delta-G solvation = -3725.464499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46318 -40.13416 -39.12834 -36.99990 -35.86190 -35.06359 -33.80636 -32.15359 -31.68757 -30.63400 -29.93090 -27.14642 -25.48915 -24.10801 -23.78072 -23.41596 -22.49855 -21.39249 -21.02074 -19.24575 -18.63212 -18.04597 -17.51890 -16.87731 -16.49173 -16.18932 -16.00984 -15.98125 -15.69939 -15.39724 -14.99732 -14.78890 -14.57376 -14.49547 -14.27862 -14.15112 -13.87735 -13.66365 -13.37241 -13.28514 -12.99062 -12.77037 -12.69024 -12.40103 -12.20400 -12.11418 -12.06506 -11.94924 -11.89724 -11.67276 -11.43388 -11.13018 -10.94823 -10.59597 -10.15998 -9.96322 -9.67215 -8.78281 -7.91370 -5.39629 -0.16257 0.40945 1.47336 1.49115 1.59816 1.82786 2.07532 2.48263 2.86192 3.09724 3.25933 3.60094 3.63449 3.80856 3.85285 3.92552 4.00565 4.03210 4.19754 4.28543 4.36223 4.41796 4.50350 4.54713 4.56684 4.64536 4.67163 4.81574 4.90420 4.95824 4.99859 5.01544 5.10007 5.13132 5.14548 5.32079 5.33853 5.39997 5.43473 5.43909 5.58459 5.62738 5.64086 5.94291 6.32671 6.51300 6.87580 7.07991 7.18277 7.76100 8.29358 9.16271 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026086 B = 0.002555 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.115294 B =10954.408728 C =11153.881993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.056 4.056 4 C -0.128 4.128 5 C -0.076 4.076 6 C -0.158 4.158 7 C 0.550 3.450 8 O -0.589 6.589 9 N -0.697 5.697 10 C 0.169 3.831 11 H 0.054 0.946 12 C -0.129 4.129 13 C 0.180 3.820 14 N -0.603 5.603 15 C -0.263 4.263 16 H 0.079 0.921 17 C -0.053 4.053 18 N -0.938 5.938 19 Si 0.972 3.028 20 H -0.260 1.260 21 H -0.295 1.295 22 H -0.291 1.291 23 C 0.117 3.883 24 C 0.103 3.897 25 H 0.077 0.923 26 O -0.571 6.571 27 C -0.080 4.080 28 C -0.125 4.125 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.147 0.853 35 H 0.119 0.881 36 H 0.412 0.588 37 H 0.054 0.946 38 H 0.072 0.928 39 H -0.010 1.010 40 H 0.064 0.936 41 H 0.251 0.749 42 H 0.010 0.990 43 H 0.078 0.922 44 H 0.397 0.603 45 H 0.144 0.856 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.417 -23.221 -3.525 27.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.056 4.056 4 C -0.146 4.146 5 C -0.095 4.095 6 C -0.161 4.161 7 C 0.339 3.661 8 O -0.470 6.470 9 N -0.348 5.348 10 C 0.064 3.936 11 H 0.072 0.928 12 C -0.169 4.169 13 C 0.054 3.946 14 N -0.328 5.328 15 C -0.393 4.393 16 H 0.096 0.904 17 C -0.248 4.248 18 N -0.583 5.583 19 Si 0.800 3.200 20 H -0.184 1.184 21 H -0.222 1.222 22 H -0.218 1.218 23 C -0.009 4.009 24 C 0.042 3.958 25 H 0.095 0.905 26 O -0.378 6.378 27 C -0.098 4.098 28 C -0.142 4.142 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.165 0.835 35 H 0.137 0.863 36 H 0.250 0.750 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.008 0.992 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.028 0.972 43 H 0.097 0.903 44 H 0.247 0.753 45 H 0.162 0.838 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.127 -23.034 -2.192 27.109 hybrid contribution 0.978 1.273 -0.627 1.723 sum -13.149 -21.761 -2.819 25.581 Atomic orbital electron populations 1.21751 0.94024 1.02643 1.02018 1.20679 0.96574 0.90686 1.04404 1.20506 0.95053 0.97343 0.92707 1.21233 1.00314 0.93683 0.99390 1.21324 0.95885 0.95142 0.97156 1.19882 1.07155 0.92931 0.96096 1.18863 0.76661 0.87074 0.83481 1.90742 1.54449 1.69004 1.32846 1.45757 1.66448 1.13850 1.08707 1.20676 0.93598 0.81652 0.97656 0.92803 1.22324 0.94306 0.98951 1.01320 1.20537 0.98743 0.87888 0.87438 1.44260 1.01393 1.59068 1.28069 1.19605 1.00077 1.28718 0.90905 0.90370 1.25927 1.02629 0.99077 0.97204 1.70216 1.25857 1.48883 1.13370 0.85143 0.78960 0.76763 0.79165 1.18366 1.22185 1.21819 1.21701 0.84862 0.94544 0.99821 1.22301 0.81300 0.96270 0.95930 0.90545 1.86463 1.19995 1.82585 1.48786 1.21524 0.96283 0.95430 0.96608 1.21323 0.99717 0.94039 0.99157 0.90885 0.93124 0.92619 0.89269 0.89858 0.83531 0.86296 0.75033 0.92721 0.90966 0.99156 0.91810 0.94033 0.97158 0.90324 0.75303 0.83816 0.82534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 71.98 0.71 -0.52 16 2 C -0.09 -0.76 6.06 29.85 0.18 -0.58 16 3 C -0.06 -0.82 5.14 -19.81 -0.10 -0.92 16 4 C -0.13 -2.30 9.68 22.23 0.22 -2.08 16 5 C -0.08 -1.89 9.60 22.53 0.22 -1.67 16 6 C -0.16 -4.17 5.87 -20.09 -0.12 -4.29 16 7 C 0.55 18.79 7.74 86.79 0.67 19.46 16 8 O -0.59 -25.51 16.01 -3.89 -0.06 -25.58 16 9 N -0.70 -21.40 4.87 -445.26 -2.17 -23.57 16 10 C 0.17 6.29 2.12 45.02 0.10 6.39 16 11 H 0.05 2.40 7.58 -2.38 -0.02 2.38 16 12 C -0.13 -5.29 5.65 30.67 0.17 -5.11 16 13 C 0.18 9.13 5.30 86.36 0.46 9.59 16 14 N -0.60 -30.00 2.99 -699.08 -2.09 -32.10 16 15 C -0.26 -14.03 9.58 84.03 0.81 -13.22 16 16 H 0.08 3.93 7.89 -2.91 -0.02 3.91 16 17 C -0.05 -2.93 4.92 84.86 0.42 -2.51 16 18 N -0.94 -56.09 11.20 21.65 0.24 -55.84 16 19 Si 0.97 44.07 29.59 68.60 2.03 46.10 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 C 0.12 4.72 6.14 86.36 0.53 5.25 16 24 C 0.10 3.36 3.14 30.67 0.10 3.46 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 O -0.57 -15.71 13.16 -148.98 -1.96 -17.67 16 27 C -0.08 -1.52 9.54 22.53 0.21 -1.30 16 28 C -0.12 -1.82 9.68 22.23 0.22 -1.61 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 32 H 0.09 0.57 8.08 -2.39 -0.02 0.55 16 33 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 34 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.12 3.25 7.65 -2.91 -0.02 3.22 16 36 H 0.41 9.68 6.64 -92.71 -0.62 9.07 16 37 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H 0.06 3.59 6.06 -2.39 -0.01 3.58 16 41 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 42 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.08 2.85 7.93 -2.39 -0.02 2.83 16 44 H 0.40 7.06 9.08 -74.06 -0.67 6.39 16 45 H 0.14 2.10 6.41 -2.91 -0.02 2.08 16 46 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -74.28 374.15 0.48 -73.80 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.29 Total: 24.52 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 4.78 Total: 10.33 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -4.02 Total: -111.51 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -2.02 Total: -43.25 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -74.28 0.48 -73.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090773213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.875 kcal (2) G-P(sol) polarization free energy of solvation -74.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds