Wall clock time and date at job start Fri Apr 10 2020 14:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47564 * 2 1 4 4 C 1.38358 * 119.85209 * 90.00015 * 3 2 1 5 5 C 1.37962 * 120.14454 * 179.97438 * 4 3 2 6 6 C 1.39567 * 119.85346 * 0.28004 * 5 4 3 7 7 C 1.47847 * 120.14653 * 179.72410 * 6 5 4 8 8 O 1.21554 * 119.99931 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00293 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00103 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.45632 * 34.97705 * 10 9 7 12 12 C 1.53038 * 109.45938 * 275.00603 * 10 9 7 13 13 C 1.53197 * 109.30965 * 178.61737 * 12 10 9 14 14 N 1.46925 * 108.77823 * 54.62874 * 13 12 10 15 15 C 1.36937 * 120.62817 * 126.37215 * 14 13 12 16 16 H 1.08000 * 119.99786 * 207.68744 * 15 14 13 17 17 C 1.38814 * 120.00026 * 27.67849 * 15 14 13 18 18 N 1.31619 * 119.99927 * 17.37635 * 17 15 14 19 19 Si 1.86802 * 119.99822 * 197.37132 * 17 15 14 20 20 H 1.48494 * 109.47109 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46895 * 120.00826 * 19 17 15 22 22 H 1.48504 * 109.47198 * 240.00385 * 19 17 15 23 23 C 1.46924 * 118.74039 * 306.39576 * 14 13 12 24 24 C 1.53033 * 109.45818 * 154.93437 * 10 9 7 25 25 H 1.08999 * 109.50122 * 61.43405 * 24 10 9 26 26 O 1.42898 * 109.49927 * 301.33660 * 24 10 9 27 27 C 1.39578 * 119.71202 * 359.42456 * 6 5 4 28 28 C 1.37955 * 119.85061 * 0.59633 * 27 6 5 29 29 H 1.08997 * 109.47154 * 59.99286 * 1 2 3 30 30 H 1.08993 * 109.47402 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46424 * 300.00029 * 1 2 3 32 32 H 1.09010 * 109.46867 * 240.00423 * 2 1 3 33 33 H 1.08997 * 109.47154 * 120.00713 * 2 1 3 34 34 H 1.07996 * 119.92997 * 359.95998 * 4 3 2 35 35 H 1.08004 * 120.07245 * 180.02562 * 5 4 3 36 36 H 0.97000 * 120.00189 * 0.02562 * 9 7 6 37 37 H 1.09005 * 109.49486 * 298.56017 * 12 10 9 38 38 H 1.08999 * 109.50146 * 58.66076 * 12 10 9 39 39 H 1.09001 * 109.58416 * 174.41976 * 13 12 10 40 40 H 1.09004 * 109.58111 * 294.69901 * 13 12 10 41 41 H 0.97002 * 119.99655 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58597 * 173.39400 * 23 14 13 43 43 H 1.09005 * 109.58423 * 293.82166 * 23 14 13 44 44 H 0.96701 * 114.00145 * 179.97438 * 26 24 10 45 45 H 1.08000 * 120.07928 * 180.27537 * 27 6 5 46 46 H 1.08000 * 119.92619 * 179.70039 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2621 2.0700 1.2000 5 6 2.7225 3.3705 1.2070 6 6 2.9511 4.0331 0.0001 7 6 3.4388 5.4289 0.0002 8 8 3.6410 6.0020 1.0528 9 7 3.6591 6.0658 -1.1670 10 6 4.1417 7.4490 -1.1669 11 1 4.8189 7.5973 -0.3257 12 6 2.9527 8.4039 -1.0387 13 6 3.4638 9.8477 -1.0043 14 7 4.3007 10.0815 -2.1890 15 6 4.0438 11.1328 -3.0281 16 1 4.3193 11.0714 -4.0706 17 6 3.4292 12.2772 -2.5389 18 7 3.4002 12.5059 -1.2430 19 14 2.6433 13.4928 -3.7196 20 1 2.8102 13.0077 -5.1132 21 1 1.1964 13.6190 -3.4098 22 1 3.2979 14.8178 -3.5745 23 6 5.4180 9.1658 -2.4567 24 6 4.8849 7.7297 -2.4749 25 1 4.2019 7.6058 -3.3153 26 8 5.9767 6.8174 -2.6084 27 6 2.7234 3.3703 -1.2069 28 6 2.2625 2.0700 -1.2000 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0802 1.5578 2.1332 35 1 2.9018 3.8761 2.1445 36 1 3.4973 5.6086 -2.0071 37 1 2.2878 8.2737 -1.8927 38 1 2.4101 8.1879 -0.1184 39 1 2.6179 10.5351 -1.0129 40 1 4.0533 10.0050 -0.1010 41 1 2.9710 13.3058 -0.9012 42 1 5.8615 9.4033 -3.4237 43 1 6.1690 9.2668 -1.6731 44 1 6.4931 6.9376 -3.4171 45 1 2.9026 3.8759 -2.1443 46 1 2.0813 1.5576 -2.1332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090773214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:22 Heat of formation + Delta-G solvation = -49.404432 kcal Electronic energy + Delta-G solvation = -26527.820763 eV Core-core repulsion = 22803.332795 eV Total energy + Delta-G solvation = -3724.487968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.29077 -38.99604 -37.75728 -35.41477 -34.43934 -34.28381 -32.03772 -31.12331 -30.34867 -29.46413 -28.44549 -25.48518 -24.45671 -22.84901 -22.52002 -22.08675 -21.41526 -20.09777 -19.55750 -17.94019 -17.03626 -16.57507 -16.20556 -15.74786 -15.27532 -15.05000 -14.78730 -14.63892 -14.11955 -13.96768 -13.91104 -13.67374 -13.58798 -13.38987 -13.13965 -12.85743 -12.59491 -12.29480 -12.17530 -11.91359 -11.60682 -11.55569 -11.34292 -11.12381 -11.08482 -10.89967 -10.67133 -10.32313 -10.25873 -9.96540 -9.84601 -9.72432 -9.43661 -9.17578 -8.96193 -8.70397 -8.44932 -6.78449 -5.85725 -3.29749 0.73610 1.19403 2.92373 3.32357 3.36702 3.41195 3.43209 3.80720 4.35328 4.39847 4.49553 4.51743 4.73196 4.79758 4.92315 4.99775 5.15907 5.19188 5.28512 5.29171 5.32236 5.47487 5.53451 5.54949 5.59960 5.68235 5.76983 5.80672 5.85521 5.96745 6.09549 6.13185 6.23392 6.31827 6.33103 6.47511 6.53208 6.66804 6.69986 6.76707 6.87709 7.28524 7.60420 7.72435 7.74674 7.91186 8.36676 8.44095 9.12218 9.74726 10.30559 11.22873 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.002594 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.334632 B =10789.920381 C =10993.401835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.064 4.064 4 C -0.127 4.127 5 C -0.059 4.059 6 C -0.131 4.131 7 C 0.554 3.446 8 O -0.539 6.539 9 N -0.710 5.710 10 C 0.163 3.837 11 H 0.089 0.911 12 C -0.147 4.147 13 C 0.171 3.829 14 N -0.588 5.588 15 C -0.259 4.259 16 H 0.067 0.933 17 C 0.004 3.996 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.121 3.879 24 C 0.080 3.920 25 H 0.056 0.944 26 O -0.571 6.571 27 C -0.083 4.083 28 C -0.127 4.127 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.395 0.605 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.024 0.976 41 H 0.255 0.745 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.374 0.626 45 H 0.126 0.874 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.215 -23.679 -0.689 23.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.064 4.064 4 C -0.145 4.145 5 C -0.077 4.077 6 C -0.134 4.134 7 C 0.341 3.659 8 O -0.417 6.417 9 N -0.360 5.360 10 C 0.059 3.941 11 H 0.107 0.893 12 C -0.187 4.187 13 C 0.045 3.955 14 N -0.312 5.312 15 C -0.388 4.388 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.542 5.542 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.216 1.216 23 C -0.007 4.007 24 C 0.019 3.981 25 H 0.074 0.926 26 O -0.375 6.375 27 C -0.101 4.101 28 C -0.145 4.145 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.229 0.771 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.042 0.958 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.220 0.780 45 H 0.144 0.856 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.350 -23.298 0.711 23.548 hybrid contribution -0.266 0.731 -1.543 1.728 sum -3.616 -22.567 -0.832 22.870 Atomic orbital electron populations 1.21753 0.94469 1.01803 1.02465 1.20601 0.96369 0.92466 1.03062 1.20103 0.96920 0.96164 0.93217 1.21008 1.01005 0.94767 0.97757 1.21296 0.94653 0.93858 0.97934 1.20072 1.04352 0.94602 0.94390 1.18248 0.77813 0.85688 0.84177 1.90773 1.52067 1.67749 1.31145 1.46016 1.66960 1.15077 1.07936 1.21032 0.95765 0.79450 0.97858 0.89321 1.22610 0.96566 0.98320 1.01191 1.20836 0.95935 0.90367 0.88403 1.44056 1.29204 1.29596 1.28370 1.19195 1.36793 0.92568 0.90248 0.91481 1.25078 1.01886 0.96724 0.95800 1.70048 1.45785 1.27017 1.11354 0.86210 0.79096 0.80920 0.80427 1.20234 1.21455 1.21637 1.21527 0.91322 0.88168 0.99654 1.22780 0.87746 0.91223 0.96378 0.92607 1.86490 1.45582 1.58735 1.46707 1.21321 0.96903 0.94742 0.97165 1.20947 1.01006 0.94760 0.97752 0.92421 0.92308 0.92401 0.90843 0.90830 0.85541 0.84612 0.77072 0.92339 0.91868 0.88819 0.95762 0.93470 0.92136 0.95273 0.78006 0.85606 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.90 37.16 0.37 -0.50 16 2 C -0.09 -0.55 6.06 -27.88 -0.17 -0.72 16 3 C -0.06 -0.56 5.14 -104.53 -0.54 -1.10 16 4 C -0.13 -1.24 9.68 -39.64 -0.38 -1.62 16 5 C -0.06 -0.72 9.60 -39.19 -0.38 -1.10 16 6 C -0.13 -1.76 5.87 -104.97 -0.62 -2.37 16 7 C 0.55 9.26 7.74 -12.33 -0.10 9.16 16 8 O -0.54 -11.01 16.01 5.32 0.09 -10.92 16 9 N -0.71 -11.11 4.87 -54.71 -0.27 -11.38 16 10 C 0.16 3.00 2.12 -67.89 -0.14 2.85 16 11 H 0.09 1.88 7.57 -51.93 -0.39 1.49 16 12 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 13 C 0.17 4.12 5.31 -3.71 -0.02 4.10 16 14 N -0.59 -14.43 2.99 -172.31 -0.52 -14.95 16 15 C -0.26 -6.91 9.58 -15.06 -0.14 -7.05 16 16 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 17 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 18 N -0.90 -25.88 11.19 55.49 0.62 -25.26 16 19 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.12 2.46 6.14 -3.71 -0.02 2.44 16 24 C 0.08 1.36 3.14 -26.61 -0.08 1.28 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 O -0.57 -8.59 13.16 -35.23 -0.46 -9.05 16 27 C -0.08 -0.88 9.54 -39.19 -0.37 -1.26 16 28 C -0.13 -1.15 9.68 -39.64 -0.38 -1.53 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.40 8.08 -51.92 -0.42 -0.02 16 33 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.14 1.71 7.65 -52.48 -0.40 1.31 16 36 H 0.39 5.09 6.64 -40.82 -0.27 4.82 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.09 2.50 6.03 -51.93 -0.31 2.19 16 40 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.37 3.99 9.08 45.56 0.41 4.41 16 45 H 0.13 1.13 6.41 -52.49 -0.34 0.79 16 46 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -32.55 374.12 -9.48 -42.03 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.33 Total: 8.12 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -3.22 Total: -0.48 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.16 Total: -51.58 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.38 Total: -19.97 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.55 -9.48 -42.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090773214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.374 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds