Wall clock time and date at job start Fri Apr 10 2020 14:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47564 * 2 1 4 4 C 1.38358 * 119.85209 * 90.00015 * 3 2 1 5 5 C 1.37962 * 120.14454 * 179.97438 * 4 3 2 6 6 C 1.39567 * 119.85346 * 0.28004 * 5 4 3 7 7 C 1.47847 * 120.14653 * 179.72410 * 6 5 4 8 8 O 1.21554 * 119.99931 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00293 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00103 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.45632 * 34.97705 * 10 9 7 12 12 C 1.53038 * 109.45938 * 275.00603 * 10 9 7 13 13 C 1.53197 * 109.30965 * 178.61737 * 12 10 9 14 14 N 1.46925 * 108.77823 * 54.62874 * 13 12 10 15 15 C 1.36937 * 120.62817 * 126.37215 * 14 13 12 16 16 H 1.08000 * 119.99786 * 207.68744 * 15 14 13 17 17 C 1.38814 * 120.00026 * 27.67849 * 15 14 13 18 18 N 1.31619 * 119.99927 * 17.37635 * 17 15 14 19 19 Si 1.86802 * 119.99822 * 197.37132 * 17 15 14 20 20 H 1.48494 * 109.47109 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46895 * 120.00826 * 19 17 15 22 22 H 1.48504 * 109.47198 * 240.00385 * 19 17 15 23 23 C 1.46924 * 118.74039 * 306.39576 * 14 13 12 24 24 C 1.53033 * 109.45818 * 154.93437 * 10 9 7 25 25 H 1.08999 * 109.50122 * 61.43405 * 24 10 9 26 26 O 1.42898 * 109.49927 * 301.33660 * 24 10 9 27 27 C 1.39578 * 119.71202 * 359.42456 * 6 5 4 28 28 C 1.37955 * 119.85061 * 0.59633 * 27 6 5 29 29 H 1.08997 * 109.47154 * 59.99286 * 1 2 3 30 30 H 1.08993 * 109.47402 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46424 * 300.00029 * 1 2 3 32 32 H 1.09010 * 109.46867 * 240.00423 * 2 1 3 33 33 H 1.08997 * 109.47154 * 120.00713 * 2 1 3 34 34 H 1.07996 * 119.92997 * 359.95998 * 4 3 2 35 35 H 1.08004 * 120.07245 * 180.02562 * 5 4 3 36 36 H 0.97000 * 120.00189 * 0.02562 * 9 7 6 37 37 H 1.09005 * 109.49486 * 298.56017 * 12 10 9 38 38 H 1.08999 * 109.50146 * 58.66076 * 12 10 9 39 39 H 1.09001 * 109.58416 * 174.41976 * 13 12 10 40 40 H 1.09004 * 109.58111 * 294.69901 * 13 12 10 41 41 H 0.97002 * 119.99655 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58597 * 173.39400 * 23 14 13 43 43 H 1.09005 * 109.58423 * 293.82166 * 23 14 13 44 44 H 0.96701 * 114.00145 * 179.97438 * 26 24 10 45 45 H 1.08000 * 120.07928 * 180.27537 * 27 6 5 46 46 H 1.08000 * 119.92619 * 179.70039 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2621 2.0700 1.2000 5 6 2.7225 3.3705 1.2070 6 6 2.9511 4.0331 0.0001 7 6 3.4388 5.4289 0.0002 8 8 3.6410 6.0020 1.0528 9 7 3.6591 6.0658 -1.1670 10 6 4.1417 7.4490 -1.1669 11 1 4.8189 7.5973 -0.3257 12 6 2.9527 8.4039 -1.0387 13 6 3.4638 9.8477 -1.0043 14 7 4.3007 10.0815 -2.1890 15 6 4.0438 11.1328 -3.0281 16 1 4.3193 11.0714 -4.0706 17 6 3.4292 12.2772 -2.5389 18 7 3.4002 12.5059 -1.2430 19 14 2.6433 13.4928 -3.7196 20 1 2.8102 13.0077 -5.1132 21 1 1.1964 13.6190 -3.4098 22 1 3.2979 14.8178 -3.5745 23 6 5.4180 9.1658 -2.4567 24 6 4.8849 7.7297 -2.4749 25 1 4.2019 7.6058 -3.3153 26 8 5.9767 6.8174 -2.6084 27 6 2.7234 3.3703 -1.2069 28 6 2.2625 2.0700 -1.2000 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0802 1.5578 2.1332 35 1 2.9018 3.8761 2.1445 36 1 3.4973 5.6086 -2.0071 37 1 2.2878 8.2737 -1.8927 38 1 2.4101 8.1879 -0.1184 39 1 2.6179 10.5351 -1.0129 40 1 4.0533 10.0050 -0.1010 41 1 2.9710 13.3058 -0.9012 42 1 5.8615 9.4033 -3.4237 43 1 6.1690 9.2668 -1.6731 44 1 6.4931 6.9376 -3.4171 45 1 2.9026 3.8759 -2.1443 46 1 2.0813 1.5576 -2.1332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090773214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:21 Heat of formation + Delta-G solvation = -71.769747 kcal Electronic energy + Delta-G solvation = -26528.790596 eV Core-core repulsion = 22803.332795 eV Total energy + Delta-G solvation = -3725.457801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.46348 -40.13459 -39.12882 -37.00055 -35.86232 -35.06417 -33.80608 -32.15471 -31.68864 -30.63430 -29.93119 -27.14712 -25.48997 -24.10838 -23.78111 -23.41613 -22.49861 -21.39290 -21.01976 -19.24669 -18.63329 -18.04593 -17.51815 -16.87907 -16.49285 -16.18443 -16.01195 -15.98154 -15.69990 -15.39528 -14.99553 -14.82609 -14.51948 -14.49919 -14.26811 -14.17276 -13.90371 -13.65185 -13.35494 -13.30625 -12.98289 -12.76747 -12.69802 -12.40159 -12.20444 -12.11129 -12.06537 -11.95059 -11.89465 -11.67311 -11.43371 -11.13115 -10.94937 -10.59407 -10.15840 -9.96308 -9.67271 -8.79055 -7.91475 -5.39029 -0.16261 0.40939 1.47292 1.49216 1.59891 1.82768 2.07512 2.48317 2.86166 3.09732 3.25816 3.59998 3.63418 3.80850 3.85357 3.92543 4.00559 4.03166 4.19761 4.28525 4.36143 4.41818 4.50294 4.54584 4.56594 4.64419 4.67125 4.81513 4.90289 4.95738 4.99775 5.01468 5.09810 5.12968 5.14446 5.32075 5.33788 5.39984 5.43436 5.43836 5.58500 5.62723 5.64224 5.94289 6.32377 6.51279 6.87647 7.07865 7.18260 7.76178 8.29190 9.16240 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.002594 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.334632 B =10789.920381 C =10993.401835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.056 4.056 4 C -0.128 4.128 5 C -0.076 4.076 6 C -0.158 4.158 7 C 0.550 3.450 8 O -0.589 6.589 9 N -0.697 5.697 10 C 0.169 3.831 11 H 0.054 0.946 12 C -0.129 4.129 13 C 0.180 3.820 14 N -0.603 5.603 15 C -0.263 4.263 16 H 0.079 0.921 17 C -0.053 4.053 18 N -0.938 5.938 19 Si 0.972 3.028 20 H -0.260 1.260 21 H -0.292 1.292 22 H -0.295 1.295 23 C 0.117 3.883 24 C 0.103 3.897 25 H 0.077 0.923 26 O -0.571 6.571 27 C -0.080 4.080 28 C -0.125 4.125 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.147 0.853 35 H 0.119 0.881 36 H 0.412 0.588 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.064 0.936 40 H -0.010 1.010 41 H 0.251 0.749 42 H 0.078 0.922 43 H 0.011 0.989 44 H 0.397 0.603 45 H 0.144 0.856 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 -26.901 -3.548 27.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.056 4.056 4 C -0.146 4.146 5 C -0.095 4.095 6 C -0.161 4.161 7 C 0.339 3.661 8 O -0.470 6.470 9 N -0.348 5.348 10 C 0.064 3.936 11 H 0.072 0.928 12 C -0.169 4.169 13 C 0.053 3.947 14 N -0.328 5.328 15 C -0.393 4.393 16 H 0.097 0.903 17 C -0.248 4.248 18 N -0.583 5.583 19 Si 0.800 3.200 20 H -0.184 1.184 21 H -0.218 1.218 22 H -0.222 1.222 23 C -0.009 4.009 24 C 0.042 3.958 25 H 0.095 0.905 26 O -0.378 6.378 27 C -0.098 4.098 28 C -0.142 4.142 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.165 0.835 35 H 0.137 0.863 36 H 0.250 0.750 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.008 0.992 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.029 0.971 44 H 0.247 0.753 45 H 0.162 0.838 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.962 -26.575 -2.215 26.960 hybrid contribution -0.008 1.610 -0.625 1.727 sum -3.970 -24.965 -2.840 25.438 Atomic orbital electron populations 1.21753 0.94093 1.02637 1.01992 1.20678 0.96508 0.90691 1.04433 1.20507 0.95046 0.97352 0.92705 1.21235 1.00306 0.93688 0.99391 1.21324 0.95890 0.95139 0.97157 1.19880 1.07140 0.92943 0.96097 1.18865 0.76772 0.86963 0.83481 1.90742 1.54271 1.69187 1.32844 1.45755 1.66497 1.13802 1.08706 1.20675 0.94561 0.80700 0.97648 0.92794 1.22326 0.97254 0.96028 1.01299 1.20540 0.94453 0.92279 0.87385 1.44265 1.30565 1.30041 1.27917 1.19610 1.35871 0.92825 0.90996 0.90344 1.25912 1.02917 0.98818 0.97193 1.70220 1.47173 1.27578 1.13361 0.85146 0.77510 0.78230 0.79163 1.18375 1.21835 1.22171 1.21701 0.89956 0.89460 0.99805 1.22302 0.88406 0.89208 0.95897 0.90547 1.86464 1.45277 1.57489 1.48593 1.21523 0.96265 0.95451 0.96608 1.21324 0.99709 0.94044 0.99159 0.92669 0.90878 0.93153 0.89228 0.89818 0.83532 0.86298 0.75033 0.90976 0.92726 0.91766 0.99168 0.94034 0.90314 0.97127 0.75299 0.83814 0.82531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.90 71.98 0.71 -0.55 16 2 C -0.09 -0.76 6.06 29.85 0.18 -0.58 16 3 C -0.06 -0.82 5.14 -19.81 -0.10 -0.92 16 4 C -0.13 -2.30 9.68 22.23 0.22 -2.08 16 5 C -0.08 -1.89 9.60 22.53 0.22 -1.67 16 6 C -0.16 -4.17 5.87 -20.09 -0.12 -4.29 16 7 C 0.55 18.79 7.74 86.79 0.67 19.46 16 8 O -0.59 -25.52 16.01 -3.89 -0.06 -25.58 16 9 N -0.70 -21.40 4.87 -445.28 -2.17 -23.57 16 10 C 0.17 6.29 2.12 45.01 0.10 6.39 16 11 H 0.05 2.41 7.57 -2.39 -0.02 2.39 16 12 C -0.13 -5.29 5.65 30.67 0.17 -5.12 16 13 C 0.18 9.11 5.31 86.36 0.46 9.57 16 14 N -0.60 -30.00 2.99 -699.08 -2.09 -32.10 16 15 C -0.26 -14.03 9.58 84.03 0.81 -13.22 16 16 H 0.08 3.94 7.89 -2.91 -0.02 3.92 16 17 C -0.05 -2.93 4.91 84.86 0.42 -2.51 16 18 N -0.94 -56.08 11.19 21.65 0.24 -55.84 16 19 Si 0.97 44.06 29.59 68.60 2.03 46.09 16 20 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 23 C 0.12 4.72 6.14 86.36 0.53 5.25 16 24 C 0.10 3.36 3.14 30.67 0.10 3.45 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 O -0.57 -15.69 13.16 -148.98 -1.96 -17.65 16 27 C -0.08 -1.52 9.54 22.53 0.21 -1.30 16 28 C -0.12 -1.82 9.68 22.23 0.22 -1.61 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 0.56 8.08 -2.38 -0.02 0.54 16 33 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 34 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.12 3.24 7.65 -2.91 -0.02 3.22 16 36 H 0.41 9.69 6.64 -92.71 -0.62 9.07 16 37 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 38 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.06 3.62 6.03 -2.39 -0.01 3.60 16 40 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 41 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 42 H 0.08 2.85 7.93 -2.39 -0.02 2.83 16 43 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.40 7.05 9.08 -74.06 -0.67 6.38 16 45 H 0.14 2.10 6.41 -2.91 -0.02 2.08 16 46 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -74.28 374.12 0.48 -73.81 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -0.29 Total: 24.58 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 4.78 Total: 10.26 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -4.02 Total: -111.51 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -2.02 Total: -43.23 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -74.28 0.48 -73.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090773214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.037 kcal (2) G-P(sol) polarization free energy of solvation -74.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds