Wall clock time and date at job start Fri Apr 10 2020 14:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46989 * 2 1 4 4 C 1.38356 * 119.85168 * 90.00252 * 3 2 1 5 5 C 1.37956 * 120.14747 * 180.02562 * 4 3 2 6 6 C 1.39582 * 119.85043 * 359.97438 * 5 4 3 7 7 C 1.47842 * 120.14290 * 179.97438 * 6 5 4 8 8 O 1.21548 * 120.00121 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99817 * 179.97438 * 7 6 5 10 10 C 1.46506 * 120.00060 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.44627 * 324.96876 * 10 9 7 12 12 C 1.53040 * 109.45804 * 84.93118 * 10 9 7 13 13 C 1.53193 * 109.31123 * 58.65867 * 12 10 9 14 14 N 1.46928 * 108.77874 * 54.63211 * 13 12 10 15 15 C 1.36928 * 120.63281 * 126.36680 * 14 13 12 16 16 H 1.08006 * 120.00194 * 331.87377 * 15 14 13 17 17 C 1.38816 * 120.00151 * 151.86226 * 15 14 13 18 18 N 1.31617 * 119.99526 * 343.06971 * 17 15 14 19 19 Si 1.86804 * 120.00023 * 163.07114 * 17 15 14 20 20 H 1.48498 * 109.47026 * 90.00171 * 19 17 15 21 21 H 1.48499 * 109.46647 * 210.00130 * 19 17 15 22 22 H 1.48499 * 109.46874 * 329.99993 * 19 17 15 23 23 C 1.46924 * 118.73684 * 306.39622 * 14 13 12 24 24 C 1.53038 * 109.46066 * 204.99986 * 10 9 7 25 25 H 1.09003 * 109.52152 * 181.37475 * 24 10 9 26 26 O 1.42906 * 109.49575 * 61.30202 * 24 10 9 27 27 C 1.39574 * 119.71184 * 0.24577 * 6 5 4 28 28 C 1.37960 * 119.85113 * 359.52079 * 27 6 5 29 29 H 1.09006 * 109.47259 * 59.99988 * 1 2 3 30 30 H 1.09002 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47186 * 299.99655 * 1 2 3 32 32 H 1.09006 * 109.46566 * 240.00310 * 2 1 3 33 33 H 1.08998 * 109.46926 * 120.00573 * 2 1 3 34 34 H 1.08005 * 119.92990 * 0.02562 * 4 3 2 35 35 H 1.07994 * 120.07612 * 179.97438 * 5 4 3 36 36 H 0.97003 * 120.00121 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.50078 * 298.70870 * 12 10 9 38 38 H 1.08996 * 109.49760 * 178.60783 * 12 10 9 39 39 H 1.09006 * 109.58651 * 294.84392 * 13 12 10 40 40 H 1.08996 * 109.70660 * 174.49413 * 13 12 10 41 41 H 0.97006 * 119.99102 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.58509 * 293.81600 * 23 14 13 43 43 H 1.09004 * 109.70313 * 173.46408 * 23 14 13 44 44 H 0.96696 * 113.99567 * 180.16355 * 26 24 10 45 45 H 1.07996 * 120.07731 * 179.72668 * 27 6 5 46 46 H 1.07994 * 119.92802 * 180.23416 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0701 1.2000 5 6 2.7212 3.3709 1.2071 6 6 2.9548 4.0318 0.0001 7 6 3.4465 5.4261 0.0002 8 8 3.6478 5.9995 1.0528 9 7 3.6716 6.0613 -1.1670 10 6 4.1583 7.4432 -1.1670 11 1 3.7215 7.9817 -0.3260 12 6 5.6832 7.4466 -1.0380 13 6 6.2920 6.6594 -2.2027 14 7 5.7919 7.2203 -3.4652 15 6 6.6619 7.6183 -4.4449 16 1 7.6536 7.9557 -4.1820 17 6 6.2694 7.5878 -5.7760 18 7 5.2181 6.8825 -6.1360 19 14 7.2332 8.5478 -7.0563 20 1 8.3096 7.6889 -7.6122 21 1 6.3209 8.9682 -8.1500 22 1 7.8352 9.7492 -6.4244 23 6 4.3407 7.3468 -3.6564 24 6 3.7538 8.1262 -2.4754 25 1 4.1364 9.1468 -2.4869 26 8 2.3288 8.1499 -2.5804 27 6 2.7168 3.3726 -1.2069 28 6 2.2621 2.0701 -1.2000 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0811 1.5574 2.1333 35 1 2.8996 3.8768 2.1444 36 1 3.5106 5.6038 -2.0071 37 1 5.9696 6.9808 -0.0950 38 1 6.0481 8.4733 -1.0627 39 1 6.0005 5.6117 -2.1275 40 1 7.3786 6.7393 -2.1722 41 1 4.9436 6.8615 -7.0662 42 1 3.8901 6.3551 -3.6998 43 1 4.1374 7.8814 -4.5843 44 1 2.0010 8.5673 -3.3886 45 1 2.8913 3.8799 -2.1443 46 1 2.0811 1.5576 -2.1332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090773215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:26 Heat of formation + Delta-G solvation = -48.316499 kcal Electronic energy + Delta-G solvation = -27169.793199 eV Core-core repulsion = 23445.352407 eV Total energy + Delta-G solvation = -3724.440792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.24558 -38.99403 -37.63486 -35.30438 -34.27420 -34.09243 -32.07571 -30.95546 -30.13811 -29.22939 -28.73075 -25.47823 -24.58240 -22.74279 -22.43133 -21.97480 -21.65485 -20.28689 -18.71360 -17.97765 -16.95092 -16.56819 -15.95332 -15.58224 -15.13536 -14.97187 -14.80883 -14.60189 -14.11003 -13.86359 -13.76593 -13.65173 -13.52696 -13.42427 -13.22505 -12.72171 -12.54177 -12.29617 -11.91135 -11.84685 -11.67420 -11.44704 -11.22645 -11.10021 -11.02991 -10.93932 -10.84209 -10.45691 -10.25244 -10.02083 -9.73614 -9.54431 -9.35018 -9.02505 -8.84872 -8.64530 -8.50761 -6.80542 -5.92074 -3.35328 0.87192 1.34528 3.03698 3.29862 3.37648 3.39927 3.50445 3.93365 4.37893 4.52117 4.58965 4.64845 4.89002 4.94889 5.04791 5.11620 5.23202 5.31145 5.32366 5.38343 5.41473 5.46001 5.64513 5.68410 5.74161 5.81942 5.82835 5.91880 5.95290 5.96916 6.02297 6.22808 6.28858 6.34660 6.44916 6.46422 6.47399 6.70222 6.78730 6.84975 6.95495 7.02986 7.37096 7.68367 7.89216 8.07923 8.31761 8.53840 9.06753 9.69516 10.25563 11.16155 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.003331 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.763973 B = 8403.320832 C = 9194.073940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.064 4.064 4 C -0.130 4.130 5 C -0.060 4.060 6 C -0.132 4.132 7 C 0.556 3.444 8 O -0.551 6.551 9 N -0.699 5.699 10 C 0.165 3.835 11 H 0.079 0.921 12 C -0.145 4.145 13 C 0.145 3.855 14 N -0.588 5.588 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.903 3.097 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.147 3.853 24 C 0.066 3.934 25 H 0.063 0.937 26 O -0.573 6.573 27 C -0.078 4.078 28 C -0.125 4.125 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.403 0.597 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.020 0.980 40 H 0.057 0.943 41 H 0.255 0.745 42 H 0.023 0.977 43 H 0.093 0.907 44 H 0.376 0.624 45 H 0.129 0.871 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.240 -9.431 9.981 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.064 4.064 4 C -0.148 4.148 5 C -0.078 4.078 6 C -0.135 4.135 7 C 0.343 3.657 8 O -0.431 6.431 9 N -0.350 5.350 10 C 0.061 3.939 11 H 0.098 0.902 12 C -0.185 4.185 13 C 0.019 3.981 14 N -0.312 5.312 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.020 3.980 24 C 0.005 3.995 25 H 0.081 0.919 26 O -0.377 6.377 27 C -0.097 4.097 28 C -0.143 4.143 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.241 0.759 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.111 0.889 44 H 0.223 0.777 45 H 0.147 0.853 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.104 -9.313 11.104 16.604 hybrid contribution 0.393 0.566 -1.809 1.935 sum -7.712 -8.747 9.295 14.913 Atomic orbital electron populations 1.21751 0.94542 1.01729 1.02428 1.20597 0.96311 0.92530 1.03055 1.20094 0.96951 0.96126 0.93213 1.20969 1.01400 0.94776 0.97652 1.21238 0.94985 0.93883 0.97741 1.20033 1.04495 0.94643 0.94359 1.18233 0.77545 0.85844 0.84058 1.90715 1.53396 1.67678 1.31303 1.45927 1.65828 1.14814 1.08414 1.20830 0.94227 0.81384 0.97505 0.90245 1.22402 0.94025 1.02078 0.99972 1.20926 0.97219 0.94300 0.85667 1.43955 1.01198 1.71849 1.14170 1.19191 0.96851 1.36819 0.85548 0.91446 1.25059 0.98436 0.98851 0.97193 1.70013 1.27818 1.40328 1.16533 0.86288 0.79222 0.80047 0.81178 1.21297 1.21517 1.20424 1.21380 0.83878 0.97151 0.95595 1.22950 0.80289 0.99390 0.96863 0.91938 1.86422 1.21415 1.83956 1.45922 1.21412 0.96138 0.94750 0.97403 1.20981 1.00799 0.94704 0.97807 0.92369 0.92366 0.92491 0.90778 0.90904 0.85673 0.84799 0.75900 0.91653 0.91067 0.96216 0.92423 0.93532 0.95937 0.88920 0.77750 0.85328 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.09 -0.68 6.06 -27.88 -0.17 -0.85 16 3 C -0.06 -0.66 5.14 -104.53 -0.54 -1.20 16 4 C -0.13 -1.42 9.68 -39.64 -0.38 -1.80 16 5 C -0.06 -0.79 9.60 -39.18 -0.38 -1.17 16 6 C -0.13 -1.98 5.87 -104.97 -0.62 -2.60 16 7 C 0.56 9.82 7.74 -12.33 -0.10 9.73 16 8 O -0.55 -11.10 16.01 5.32 0.09 -11.01 16 9 N -0.70 -12.23 4.10 -54.71 -0.22 -12.45 16 10 C 0.17 3.02 2.47 -67.89 -0.17 2.85 16 11 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 12 C -0.14 -2.63 5.77 -26.61 -0.15 -2.78 16 13 C 0.15 2.97 6.26 -3.71 -0.02 2.95 16 14 N -0.59 -13.81 2.99 -172.32 -0.52 -14.33 16 15 C -0.25 -6.64 9.58 -15.06 -0.14 -6.78 16 16 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 17 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 18 N -0.90 -24.60 11.19 55.49 0.62 -23.98 16 19 Si 0.90 20.77 29.59 -169.99 -5.03 15.74 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.15 3.19 4.63 -3.71 -0.02 3.18 16 24 C 0.07 1.22 3.36 -26.62 -0.09 1.13 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 26 O -0.57 -9.79 13.21 -35.23 -0.47 -10.25 16 27 C -0.08 -1.05 9.54 -39.18 -0.37 -1.42 16 28 C -0.12 -1.43 9.68 -39.64 -0.38 -1.81 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 35 H 0.13 1.76 7.65 -52.49 -0.40 1.36 16 36 H 0.40 6.96 4.90 -40.82 -0.20 6.76 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 40 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 41 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 42 H 0.02 0.51 6.64 -51.93 -0.34 0.17 16 43 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 44 H 0.38 5.11 9.08 45.56 0.41 5.52 16 45 H 0.13 1.70 6.41 -52.49 -0.34 1.36 16 46 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -30.46 369.92 -9.36 -39.82 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -6.16 Total: 12.15 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -3.25 Total: -1.26 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.12 Total: -50.76 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.38 Total: -21.27 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.46 -9.36 -39.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090773215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.497 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds