Wall clock time and date at job start Fri Apr 10 2020 14:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42896 * 109.47298 * 2 1 4 4 C 1.50709 * 109.47071 * 240.00302 * 2 1 3 5 5 O 1.21284 * 119.99541 * 1.14791 * 4 2 1 6 6 N 1.34773 * 119.99856 * 181.14947 * 4 2 1 7 7 C 1.47073 * 120.88411 * 355.51015 * 6 4 2 8 8 C 1.53699 * 108.27581 * 128.75299 * 7 6 4 9 9 N 1.46902 * 109.25572 * 54.08320 * 8 7 6 10 10 C 1.46902 * 110.99758 * 172.60536 * 9 8 7 11 11 C 1.50703 * 109.47347 * 294.30354 * 10 9 8 12 12 H 1.08003 * 119.99729 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99883 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99758 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00298 * 359.97438 * 13 11 10 16 16 H 1.48490 * 109.47363 * 89.99813 * 15 13 11 17 17 H 1.48503 * 109.47145 * 210.00379 * 15 13 11 18 18 H 1.48509 * 109.46854 * 329.99896 * 15 13 11 19 19 C 1.46898 * 111.26995 * 296.75551 * 9 8 7 20 20 C 1.47087 * 120.87698 * 175.78610 * 6 4 2 21 21 C 1.50698 * 109.47269 * 120.00636 * 2 1 3 22 22 C 1.38234 * 120.00424 * 75.36244 * 21 2 1 23 23 C 1.38237 * 120.00091 * 180.02562 * 22 21 2 24 24 C 1.38234 * 120.00183 * 0.06420 * 23 22 21 25 25 C 1.38237 * 119.99468 * 0.02562 * 24 23 22 26 26 C 1.38227 * 120.00461 * 359.97200 * 25 24 23 27 27 H 1.09000 * 109.46856 * 299.99302 * 1 2 3 28 28 H 1.08996 * 109.47388 * 59.99552 * 1 2 3 29 29 H 1.09007 * 109.47331 * 180.02562 * 1 2 3 30 30 H 0.96696 * 114.00486 * 187.15291 * 3 2 1 31 31 H 1.09001 * 109.63057 * 248.52092 * 7 6 4 32 32 H 1.08999 * 109.62948 * 9.10485 * 7 6 4 33 33 H 1.09002 * 109.65110 * 294.07705 * 8 7 6 34 34 H 1.09008 * 109.41929 * 173.94893 * 8 7 6 35 35 H 1.08999 * 109.47035 * 54.30225 * 10 9 8 36 36 H 1.09000 * 109.47011 * 174.30376 * 10 9 8 37 37 H 0.97000 * 120.00502 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.49083 * 303.14519 * 19 9 8 39 39 H 1.08993 * 109.48971 * 183.06435 * 19 9 8 40 40 H 1.08994 * 109.62866 * 350.90016 * 20 6 4 41 41 H 1.09002 * 109.62106 * 111.47983 * 20 6 4 42 42 H 1.08001 * 119.99685 * 0.10621 * 22 21 2 43 43 H 1.07998 * 119.99976 * 180.34716 * 23 22 21 44 44 H 1.07998 * 120.00191 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.99164 * 179.97438 * 25 24 23 46 46 H 1.08000 * 120.00219 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 1.2443 -1.1530 -2.0394 6 7 3.3571 -0.8538 -1.4322 7 6 4.3309 -0.2407 -0.5163 8 6 5.3295 -1.3241 -0.0787 9 7 5.9111 -1.9565 -1.2703 10 6 6.9972 -2.8745 -0.9019 11 6 8.1394 -2.0895 -0.3098 12 1 8.0659 -1.0160 -0.2169 13 6 9.2784 -2.7418 0.1123 14 7 10.2753 -2.0567 0.6285 15 14 9.4057 -4.5983 -0.0491 16 1 9.9973 -4.9413 -1.3671 17 1 10.2693 -5.1314 1.0350 18 1 8.0514 -5.1984 0.0568 19 6 4.8843 -2.6467 -2.0622 20 6 3.8675 -1.6227 -2.5776 21 6 2.0323 -0.7105 1.2304 22 6 1.9775 -2.0899 1.3028 23 6 2.4379 -2.7416 2.4317 24 6 2.9518 -2.0138 3.4886 25 6 3.0048 -0.6343 3.4169 26 6 2.5446 0.0173 2.2881 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 2.9638 1.4259 -0.1100 31 1 4.8594 0.5633 -1.0284 32 1 3.8129 0.1558 0.3570 33 1 4.8150 -2.0772 0.5183 34 1 6.1221 -0.8681 0.5147 35 1 6.6321 -3.5937 -0.1688 36 1 7.3422 -3.4041 -1.7899 37 1 11.0765 -2.5155 0.9258 38 1 4.3761 -3.3813 -1.4376 39 1 5.3540 -3.1498 -2.9073 40 1 3.0429 -2.1402 -3.0678 41 1 4.3523 -0.9488 -3.2840 42 1 1.5763 -2.6585 0.4769 43 1 2.4003 -3.8195 2.4860 44 1 3.3111 -2.5229 4.3707 45 1 3.4060 -0.0658 4.2429 46 1 2.5856 1.0951 2.2322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182930699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:00 Heat of formation + Delta-G solvation = -52.398806 kcal Electronic energy + Delta-G solvation = -28494.757329 eV Core-core repulsion = 24770.139516 eV Total energy + Delta-G solvation = -3724.617814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.31317 -40.00109 -39.18065 -37.92028 -36.04275 -34.41764 -33.45806 -32.23185 -31.81663 -30.56886 -30.33119 -27.69291 -25.53502 -24.77467 -23.81472 -23.37210 -22.72945 -21.61134 -20.54106 -18.95620 -18.84174 -18.61655 -17.62362 -16.77502 -16.58722 -16.27747 -16.14937 -16.09010 -15.66471 -15.61122 -15.30137 -15.13617 -14.68200 -14.49620 -14.38001 -14.21518 -13.76672 -13.67204 -13.47304 -13.23362 -13.15172 -13.06747 -12.93334 -12.59859 -12.58100 -12.37314 -12.24826 -12.07410 -11.99216 -11.86714 -11.69171 -11.43017 -10.78448 -10.77128 -9.92564 -9.86027 -9.68199 -9.10032 -8.27391 -6.30175 0.27874 0.42619 1.25838 1.34763 1.36071 1.45225 1.74768 2.34025 2.74185 2.94272 3.05050 3.11910 3.17187 3.41114 3.80099 3.91211 3.94177 4.05485 4.07510 4.11927 4.16786 4.25612 4.31857 4.42338 4.54130 4.59132 4.64044 4.72293 4.75097 4.77963 4.80135 4.89005 4.95882 4.98801 5.06876 5.07715 5.09998 5.30085 5.47255 5.49754 5.51822 5.58222 5.89909 6.01031 6.17779 6.27025 6.29148 6.58146 6.75774 6.85358 7.33420 8.88475 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014812 B = 0.004582 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.872815 B = 6108.855601 C = 6951.312350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.170 3.830 3 O -0.544 6.544 4 C 0.496 3.504 5 O -0.562 6.562 6 N -0.599 5.599 7 C 0.101 3.899 8 C 0.063 3.937 9 N -0.536 5.536 10 C 0.173 3.827 11 C -0.512 4.512 12 H 0.047 0.953 13 C 0.015 3.985 14 N -0.943 5.943 15 Si 0.939 3.061 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.256 1.256 19 C 0.042 3.958 20 C 0.121 3.879 21 C -0.123 4.123 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.107 4.107 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.388 0.612 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.023 0.977 34 H 0.076 0.924 35 H -0.017 1.017 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.023 0.977 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.131 0.869 44 H 0.140 0.860 45 H 0.147 0.853 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.210 2.233 3.170 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.126 3.874 3 O -0.354 6.354 4 C 0.284 3.716 5 O -0.441 6.441 6 N -0.332 5.332 7 C -0.021 4.021 8 C -0.066 4.066 9 N -0.260 5.260 10 C 0.046 3.954 11 C -0.551 4.551 12 H 0.065 0.935 13 C -0.183 4.183 14 N -0.584 5.584 15 Si 0.763 3.237 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.180 1.180 19 C -0.087 4.087 20 C -0.001 4.001 21 C -0.124 4.124 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.125 4.125 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.241 0.759 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.041 0.959 34 H 0.095 0.905 35 H 0.001 0.999 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.125 0.875 43 H 0.149 0.851 44 H 0.158 0.842 45 H 0.165 0.835 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.869 2.484 2.589 19.207 hybrid contribution 1.052 -1.719 0.377 2.050 sum -17.816 0.765 2.966 18.078 Atomic orbital electron populations 1.21583 0.88636 1.03493 1.03783 1.20189 0.97193 0.81755 0.88275 1.86634 1.29664 1.23620 1.95482 1.21613 0.81934 0.80054 0.88020 1.90660 1.55363 1.51162 1.46944 1.48285 1.05222 1.51870 1.27856 1.22400 0.89822 0.96117 0.93757 1.22229 0.96332 0.96270 0.91768 1.61817 1.09712 1.33152 1.21339 1.19925 0.89728 0.91209 0.94529 1.21194 0.99606 0.94847 1.39413 0.93511 1.25706 0.95187 1.02864 0.94533 1.70023 1.06970 1.37859 1.43556 0.85842 0.78880 0.80524 0.78442 1.19140 1.20887 1.18004 1.22493 0.92672 0.95135 0.98358 1.21735 0.96448 0.93998 0.87922 1.20129 1.01906 0.94069 0.96287 1.20900 1.00307 0.93825 0.98340 1.21305 0.98699 1.00710 0.93581 1.21521 0.98195 0.94819 0.99082 1.21478 0.98773 0.94722 0.98521 1.21179 0.97572 1.01196 0.92532 0.89529 0.91383 0.90592 0.75916 0.88948 0.87507 0.95901 0.90536 0.99922 0.95227 0.92462 0.95846 0.88874 0.88818 0.89790 0.87544 0.85117 0.84235 0.83502 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 8.07 71.98 0.58 -1.97 16 2 C 0.17 3.97 0.92 -12.29 -0.01 3.96 16 3 O -0.54 -11.66 11.61 -148.98 -1.73 -13.38 16 4 C 0.50 13.96 5.72 87.66 0.50 14.46 16 5 O -0.56 -18.77 15.46 -3.04 -0.05 -18.82 16 6 N -0.60 -16.40 3.00 -817.04 -2.45 -18.85 16 7 C 0.10 2.66 4.79 86.51 0.41 3.07 16 8 C 0.06 2.17 5.47 86.54 0.47 2.64 16 9 N -0.54 -20.43 4.62 -898.86 -4.15 -24.58 16 10 C 0.17 7.87 3.79 85.56 0.32 8.19 16 11 C -0.51 -27.94 8.96 25.60 0.23 -27.71 16 12 H 0.05 2.81 7.37 -2.91 -0.02 2.79 16 13 C 0.02 0.84 5.47 84.65 0.46 1.30 16 14 N -0.94 -56.66 13.96 21.45 0.30 -56.36 16 15 Si 0.94 42.55 27.47 68.60 1.88 44.44 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.26 -10.97 6.54 99.48 0.65 -10.32 16 19 C 0.04 1.33 5.62 86.38 0.49 1.81 16 20 C 0.12 3.37 6.58 86.35 0.57 3.94 16 21 C -0.12 -2.76 3.04 -19.87 -0.06 -2.82 16 22 C -0.12 -2.78 9.09 22.27 0.20 -2.57 16 23 C -0.12 -2.78 10.05 22.27 0.22 -2.56 16 24 C -0.12 -2.39 10.05 22.27 0.22 -2.16 16 25 C -0.12 -2.22 10.05 22.27 0.22 -2.00 16 26 C -0.11 -2.11 8.13 22.27 0.18 -1.93 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 29 H 0.08 1.66 8.08 -2.38 -0.02 1.64 16 30 H 0.39 6.97 5.72 -74.06 -0.42 6.54 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.11 2.38 2.58 -2.39 -0.01 2.37 16 33 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 3.03 6.67 -2.38 -0.02 3.02 16 35 H -0.02 -0.78 7.18 -2.39 -0.02 -0.80 16 36 H 0.03 1.33 7.40 -2.39 -0.02 1.31 16 37 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 2.72 7.99 -2.39 -0.02 2.70 16 40 H 0.09 2.57 7.09 -2.39 -0.02 2.55 16 41 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.11 2.74 7.56 -2.91 -0.02 2.72 16 43 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 44 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 45 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 46 H 0.15 2.41 7.15 -2.91 -0.02 2.39 16 Total: -1.00 -66.99 358.72 -0.66 -67.65 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.51 Total: 24.24 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 5.02 Total: -4.33 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -6.30 Total: -99.79 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -1.78 Total: -32.21 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.88 Total: 44.44 kcal Total: -66.99 -0.66 -67.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182930699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.251 kcal (2) G-P(sol) polarization free energy of solvation -66.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds