Wall clock time and date at job start Fri Apr 10 2020 14:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30597 * 125.86729 * 2 1 4 4 N 1.39956 * 108.95720 * 179.72342 * 3 2 1 5 5 C 1.46503 * 125.86358 * 180.30617 * 4 3 2 6 6 C 1.35157 * 108.27328 * 0.42944 * 4 3 2 7 7 N 1.38822 * 126.37961 * 179.84703 * 6 4 3 8 8 C 1.46897 * 111.00377 * 70.31171 * 7 6 4 9 9 C 1.53235 * 109.34265 * 172.74722 * 8 7 6 10 10 N 1.47078 * 108.52575 * 53.82674 * 9 8 7 11 11 C 1.36932 * 120.88432 * 128.83240 * 10 9 8 12 12 H 1.08004 * 120.00303 * 206.77909 * 11 10 9 13 13 C 1.38816 * 120.00112 * 26.78545 * 11 10 9 14 14 N 1.31628 * 119.99560 * 16.36154 * 13 11 10 15 15 Si 1.86793 * 120.00483 * 196.36629 * 13 11 10 16 16 H 1.48501 * 109.47062 * 59.99638 * 15 13 11 17 17 H 1.48500 * 109.47421 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47022 * 299.99858 * 15 13 11 19 19 C 1.47085 * 118.23647 * 308.81963 * 10 9 8 20 20 C 1.46904 * 111.00166 * 306.00647 * 7 6 4 21 21 C 1.38366 * 107.23852 * 359.58260 * 6 4 3 22 22 C 1.48342 * 126.37352 * 180.24418 * 21 6 4 23 23 N 1.33719 * 126.31534 * 0.02562 * 22 21 6 24 24 N 1.28562 * 109.85192 * 180.02562 * 23 22 21 25 25 N 1.28915 * 109.73324 * 359.97438 * 24 23 22 26 26 H 0.97001 * 126.43247 * 179.97438 * 25 24 23 27 27 N 1.32031 * 126.31804 * 179.71392 * 22 21 6 28 28 H 1.09005 * 109.47049 * 270.02019 * 1 2 3 29 29 H 1.08997 * 109.46991 * 30.01948 * 1 2 3 30 30 H 1.08999 * 109.47363 * 150.02412 * 1 2 3 31 31 H 1.08994 * 109.46854 * 264.83794 * 5 4 3 32 32 H 1.09007 * 109.46620 * 24.83736 * 5 4 3 33 33 H 1.08995 * 109.46855 * 144.83331 * 5 4 3 34 34 H 1.09001 * 109.49121 * 292.70359 * 8 7 6 35 35 H 1.08996 * 109.49355 * 52.78295 * 8 7 6 36 36 H 1.08997 * 109.63027 * 294.11505 * 9 8 7 37 37 H 1.09001 * 109.62979 * 173.53799 * 9 8 7 38 38 H 0.97003 * 119.99606 * 180.02562 * 14 13 11 39 39 H 1.09002 * 109.62482 * 291.47409 * 19 10 9 40 40 H 1.08995 * 109.62878 * 170.89162 * 19 10 9 41 41 H 1.09002 * 109.49151 * 307.21305 * 20 7 6 42 42 H 1.09001 * 109.49203 * 67.29165 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2722 1.0583 0.0000 4 7 3.6112 0.6512 0.0064 5 6 4.7777 1.5375 0.0148 6 6 3.6434 -0.6999 0.0007 7 7 4.7804 -1.4965 0.0012 8 6 5.4723 -1.4257 1.2951 9 6 6.6114 -2.4504 1.3182 10 7 7.4663 -2.2253 0.1427 11 6 8.8228 -2.0932 0.2751 12 1 9.3834 -1.5240 -0.4517 13 6 9.4774 -2.6908 1.3434 14 7 8.8774 -3.6337 2.0387 15 14 11.2097 -2.1569 1.7943 16 1 11.2090 -0.7120 2.1369 17 1 11.6813 -2.9421 2.9632 18 1 12.1159 -2.3918 0.6414 19 6 6.8255 -2.1463 -1.1789 20 6 5.6780 -1.1335 -1.1036 21 6 2.3320 -1.1414 0.0004 22 6 1.8793 -2.5540 0.0002 23 7 2.6637 -3.6370 0.0007 24 7 1.9404 -4.6999 -0.0003 25 7 0.6923 -4.3771 -0.0009 26 1 -0.0608 -4.9884 -0.0020 27 7 0.6276 -2.9740 0.0052 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5134 31 1 5.1285 1.6860 -1.0064 32 1 4.5003 2.4990 0.4472 33 1 5.5719 1.0871 0.6100 34 1 5.8806 -0.4248 1.4349 35 1 4.7678 -1.6469 2.0968 36 1 6.1981 -3.4583 1.2827 37 1 7.1989 -2.3244 2.2277 38 1 9.3347 -4.0511 2.7854 39 1 6.4326 -3.1250 -1.4544 40 1 7.5545 -1.8192 -1.9202 41 1 5.1226 -1.1429 -2.0415 42 1 6.0833 -0.1366 -0.9304 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609458967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:38:19 Heat of formation + Delta-G solvation = 225.978114 kcal Electronic energy + Delta-G solvation = -27609.117613 eV Core-core repulsion = 23857.616287 eV Total energy + Delta-G solvation = -3751.501326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.00252 -42.60800 -39.60137 -36.39746 -35.35890 -34.18162 -33.59818 -33.12352 -31.76744 -31.04662 -29.99350 -28.12386 -26.74148 -25.26932 -24.84490 -24.41420 -23.82932 -21.53223 -21.30713 -20.39682 -19.59048 -18.79442 -17.81771 -17.41880 -16.93704 -16.68393 -16.36239 -15.93364 -15.77768 -15.27535 -15.23707 -15.01424 -14.97475 -14.46950 -14.41865 -13.84633 -13.54830 -13.36907 -13.23617 -13.09575 -12.98492 -12.86548 -12.59190 -12.46956 -12.18933 -12.10480 -11.99489 -11.97348 -11.72126 -11.64819 -11.62326 -11.56461 -10.57106 -10.20185 -9.67032 -9.36241 -8.69378 -7.84442 -5.29909 -0.10862 0.48670 1.04613 1.20277 1.50789 1.51317 1.52503 1.59503 2.06166 2.48156 2.56390 2.93670 3.26223 3.31689 3.57654 3.62021 3.94495 4.04358 4.10615 4.21973 4.31712 4.32669 4.39591 4.43860 4.55164 4.56697 4.65934 4.76134 4.82359 4.85067 4.88720 5.00317 5.03474 5.13408 5.26881 5.34634 5.59716 5.65708 5.69171 5.85182 5.89701 6.35852 6.38681 6.55160 7.14958 7.33801 7.84138 8.39715 9.22890 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.016619 B = 0.004240 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.413414 B = 6602.125125 C = 7768.054339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.119 3.881 3 N -0.305 5.305 4 N -0.381 5.381 5 C 0.084 3.916 6 C 0.312 3.688 7 N -0.456 5.456 8 C 0.058 3.942 9 C 0.195 3.805 10 N -0.608 5.608 11 C -0.262 4.262 12 H 0.074 0.926 13 C -0.048 4.048 14 N -0.936 5.936 15 Si 0.968 3.032 16 H -0.276 1.276 17 H -0.298 1.298 18 H -0.277 1.277 19 C 0.150 3.850 20 C 0.049 3.951 21 C -0.188 4.188 22 C 0.292 3.708 23 N -0.305 5.305 24 N -0.012 5.012 25 N -0.280 5.280 26 H 0.484 0.516 27 N -0.299 5.299 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.000 1.000 37 H 0.065 0.935 38 H 0.250 0.750 39 H 0.014 0.986 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.491 7.588 -4.593 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.049 4.049 3 N -0.128 5.128 4 N -0.164 5.164 5 C -0.056 4.056 6 C 0.086 3.914 7 N -0.180 5.180 8 C -0.069 4.069 9 C 0.068 3.932 10 N -0.331 5.331 11 C -0.392 4.392 12 H 0.092 0.908 13 C -0.244 4.244 14 N -0.582 5.582 15 Si 0.796 3.204 16 H -0.202 1.202 17 H -0.225 1.225 18 H -0.202 1.202 19 C 0.024 3.976 20 C -0.079 4.079 21 C -0.204 4.204 22 C 0.011 3.989 23 N -0.182 5.182 24 N -0.008 5.008 25 N -0.131 5.131 26 H 0.343 0.657 27 N -0.145 5.145 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.018 0.982 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.032 0.968 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.337 7.777 -4.542 19.537 hybrid contribution 0.939 -0.416 0.582 1.180 sum -16.399 7.361 -3.960 18.406 Atomic orbital electron populations 1.20388 0.83514 1.04574 1.04362 1.22660 0.98362 0.87729 0.96185 1.77119 0.86030 1.22506 1.27178 1.49460 1.06594 1.04978 1.55376 1.22440 0.83285 0.94990 1.04847 1.20099 0.93158 0.81826 0.96284 1.59563 1.05603 1.47428 1.05359 1.22711 0.96049 0.99645 0.88506 1.20519 0.88329 0.93132 0.91203 1.44347 1.02886 1.84494 1.01407 1.19512 0.83863 1.25458 1.10364 0.90793 1.25791 1.01385 0.96369 1.00820 1.70192 1.39340 1.26076 1.22542 0.85343 0.80220 0.77691 0.77155 1.20156 1.22477 1.20238 1.21041 0.92760 0.95759 0.88020 1.22770 0.93624 0.98859 0.92606 1.16939 0.90856 0.87588 1.25061 1.22501 0.86345 0.93754 0.96293 1.75827 1.27174 0.94195 1.21050 1.78385 0.90374 1.21936 1.10086 1.51024 1.07745 1.05206 1.49096 0.65727 1.78727 1.19059 0.89372 1.27318 0.89068 0.89110 0.89228 0.88664 0.86853 0.89652 0.93786 0.91474 0.98225 0.91669 0.94135 0.96775 0.90893 0.89843 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.04 71.24 0.72 -0.59 16 2 C 0.12 3.20 7.24 43.38 0.31 3.52 16 3 N -0.31 -8.61 12.51 -46.90 -0.59 -9.20 16 4 N -0.38 -10.75 4.01 -365.17 -1.46 -12.21 16 5 C 0.08 1.82 9.59 127.77 1.23 3.04 16 6 C 0.31 10.10 5.52 132.10 0.73 10.83 16 7 N -0.46 -16.28 4.27 -699.39 -2.98 -19.27 16 8 C 0.06 2.26 5.40 86.38 0.47 2.72 16 9 C 0.19 9.47 5.41 86.35 0.47 9.93 16 10 N -0.61 -29.80 3.04 -698.13 -2.12 -31.92 16 11 C -0.26 -13.86 9.63 84.04 0.81 -13.05 16 12 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 13 C -0.05 -2.62 4.95 84.86 0.42 -2.20 16 14 N -0.94 -54.90 11.13 21.65 0.24 -54.66 16 15 Si 0.97 43.69 29.58 68.60 2.03 45.72 16 16 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 19 C 0.15 6.13 6.69 86.35 0.58 6.71 16 20 C 0.05 1.63 5.19 86.38 0.45 2.08 16 21 C -0.19 -5.92 6.16 -19.92 -0.12 -6.05 16 22 C 0.29 9.34 8.10 137.37 1.11 10.45 16 23 N -0.31 -10.97 11.95 -52.31 -0.63 -11.60 16 24 N -0.01 -0.35 13.42 37.02 0.50 0.15 16 25 N -0.28 -5.97 8.44 37.02 0.31 -5.66 16 26 H 0.48 5.12 8.96 -340.35 -3.05 2.07 16 27 N -0.30 -7.66 11.13 -52.27 -0.58 -8.25 16 28 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.65 6.69 -2.39 -0.02 1.63 16 31 H 0.10 1.76 7.66 -2.39 -0.02 1.74 16 32 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.09 2.02 5.09 -2.39 -0.01 2.01 16 34 H 0.04 1.60 5.80 -2.39 -0.01 1.58 16 35 H 0.07 2.58 8.09 -2.39 -0.02 2.56 16 36 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.07 3.52 6.11 -2.39 -0.01 3.51 16 38 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 39 H 0.01 0.63 8.14 -2.39 -0.02 0.62 16 40 H 0.07 2.76 7.95 -2.39 -0.02 2.74 16 41 H 0.08 2.53 8.09 -2.39 -0.02 2.52 16 42 H 0.06 1.68 5.37 -2.39 -0.01 1.67 16 Total: -1.00 -70.46 341.44 -0.08 -70.55 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -1.97 Total: 8.95 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: 7.16 Total: 27.39 kcal Atomic # 7 Polarization: -145.30 SS G_CDS: -7.31 Total: -152.61 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -70.46 -0.08 -70.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609458967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 296.524 kcal (2) G-P(sol) polarization free energy of solvation -70.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 226.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 225.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds