Wall clock time and date at job start Fri Apr 10 2020 14:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99886 * 2 1 4 4 H 1.48495 * 109.46997 * 269.99832 * 3 2 1 5 5 H 1.48502 * 109.47118 * 29.99804 * 3 2 1 6 6 H 1.48503 * 109.47387 * 149.99745 * 3 2 1 7 7 C 1.37881 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99746 * 0.02562 * 7 2 1 9 9 S 1.76202 * 120.00024 * 179.97438 * 7 2 1 10 10 O 1.42106 * 106.39786 * 66.46787 * 9 7 2 11 11 O 1.42095 * 106.40668 * 293.54514 * 9 7 2 12 12 N 1.65604 * 107.21505 * 180.02562 * 9 7 2 13 13 C 1.46497 * 119.99835 * 65.00488 * 12 9 7 14 14 H 1.09004 * 109.47207 * 24.99928 * 13 12 9 15 15 C 1.52995 * 109.47146 * 264.99802 * 13 12 9 16 16 O 1.42903 * 109.47148 * 294.99691 * 15 13 12 17 17 C 1.53005 * 109.47191 * 144.99766 * 13 12 9 18 18 C 1.50697 * 109.46832 * 294.99900 * 17 13 12 19 19 C 1.38247 * 119.98676 * 90.00295 * 18 17 13 20 20 C 1.38216 * 120.01497 * 179.97438 * 19 18 17 21 21 C 1.38357 * 119.98603 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.01134 * 180.02562 * 21 20 19 23 23 C 1.38347 * 119.97107 * 0.28224 * 21 20 19 24 24 C 1.38219 * 119.98927 * 359.42057 * 23 21 20 25 25 H 0.96998 * 120.00120 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99854 * 245.00192 * 12 9 7 27 27 H 1.08998 * 109.47437 * 54.99950 * 15 13 12 28 28 H 1.08998 * 109.47471 * 175.00247 * 15 13 12 29 29 H 0.96701 * 113.99953 * 179.97438 * 16 15 13 30 30 H 1.08996 * 109.47247 * 174.99608 * 17 13 12 31 31 H 1.09004 * 109.46969 * 54.99844 * 17 13 12 32 32 H 1.08003 * 119.99321 * 359.97223 * 19 18 17 33 33 H 1.08003 * 120.00776 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.00645 * 179.69150 * 23 21 20 35 35 H 1.07997 * 119.99421 * 180.29781 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 16 3.7666 -1.1939 -0.0001 10 8 4.1682 -0.6488 1.2492 11 8 4.1674 -0.6502 -1.2503 12 7 4.2568 -2.7757 0.0000 13 6 3.9611 -3.6343 -1.1496 14 1 3.8368 -3.0186 -2.0405 15 6 2.6721 -4.4147 -0.8850 16 8 2.8727 -5.3080 0.2122 17 6 5.1160 -4.6148 -1.3643 18 6 6.3583 -3.8517 -1.7457 19 6 7.2241 -3.4063 -0.7643 20 6 8.3640 -2.7069 -1.1134 21 6 8.6381 -2.4521 -2.4454 22 17 10.0700 -1.5743 -2.8847 23 6 7.7680 -2.8926 -3.4267 24 6 6.6316 -3.5972 -3.0767 25 1 -0.4850 0.8400 -0.0004 26 1 4.7398 -3.1337 0.7612 27 1 1.8686 -3.7185 -0.6445 28 1 2.4041 -4.9858 -1.7740 29 1 2.0945 -5.8363 0.4366 30 1 4.8579 -5.3110 -2.1622 31 1 5.2982 -5.1688 -0.4435 32 1 7.0098 -3.6049 0.2755 33 1 9.0401 -2.3586 -0.3466 34 1 7.9789 -2.6897 -4.4663 35 1 5.9548 -3.9453 -3.8429 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192994076.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:30 Heat of formation + Delta-G solvation = -119.650336 kcal Electronic energy + Delta-G solvation = -22982.141269 eV Core-core repulsion = 19325.542380 eV Total energy + Delta-G solvation = -3656.598889 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.048 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.50734 -37.49515 -36.41967 -35.59812 -34.68358 -34.40068 -33.06221 -31.69279 -31.00227 -28.68994 -26.53624 -25.71187 -22.80700 -21.81061 -20.61327 -19.17971 -17.70755 -17.28576 -16.95217 -16.47102 -15.88644 -15.44974 -15.16026 -14.87922 -14.46768 -13.99446 -13.69930 -13.49536 -13.42794 -13.33606 -13.04248 -12.85890 -12.61767 -11.95444 -11.63805 -11.48055 -11.38534 -11.19651 -11.08286 -10.92087 -10.79627 -10.73683 -10.58261 -10.47758 -9.90710 -9.62010 -9.23280 -9.18927 -8.97050 -8.64061 -8.41305 -6.83185 -5.37163 1.20450 1.36393 2.09665 2.16126 3.06172 3.16659 3.26799 3.67487 3.94021 4.28408 4.54599 4.57845 4.78556 4.79274 4.93131 5.21778 5.25225 5.32743 5.38073 5.50002 5.59015 5.64953 5.75087 5.79532 5.98657 6.09047 6.13299 6.25290 6.27151 6.31233 6.55559 6.73622 6.87780 7.45053 7.77553 7.86649 8.17471 8.68400 10.28448 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.005128 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.289137 B = 5458.398526 C = 6774.750397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.154 3.846 3 Si 0.799 3.201 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.018 5.018 8 H 0.124 0.876 9 S 2.673 3.327 10 O -1.010 7.010 11 O -1.009 7.009 12 N -1.111 6.111 13 C 0.168 3.832 14 H 0.105 0.895 15 C 0.049 3.951 16 O -0.568 6.568 17 C -0.081 4.081 18 C -0.066 4.066 19 C -0.100 4.100 20 C -0.110 4.110 21 C -0.040 4.040 22 Cl -0.082 7.082 23 C -0.107 4.107 24 C -0.103 4.103 25 H 0.281 0.719 26 H 0.407 0.593 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.374 0.626 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.652 -10.782 -5.010 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.065 4.065 3 Si 0.619 3.381 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.142 1.142 7 C -1.152 5.152 8 H 0.142 0.858 9 S 2.774 3.226 10 O -1.000 7.000 11 O -0.999 6.999 12 N -0.865 5.865 13 C 0.059 3.941 14 H 0.123 0.877 15 C -0.031 4.031 16 O -0.373 6.373 17 C -0.120 4.120 18 C -0.067 4.067 19 C -0.118 4.118 20 C -0.128 4.128 21 C -0.067 4.067 22 Cl -0.053 7.053 23 C -0.126 4.126 24 C -0.121 4.121 25 H 0.091 0.909 26 H 0.239 0.761 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.220 0.780 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.706 -9.531 -5.236 15.977 hybrid contribution -0.823 0.273 0.283 0.912 sum 10.883 -9.258 -4.953 15.122 Atomic orbital electron populations 1.69975 1.06551 1.29060 1.39703 1.24409 0.94768 0.98767 0.88554 0.87893 0.83662 0.84641 0.81879 1.16978 1.17903 1.14244 1.30616 1.15782 1.02072 1.66764 0.85814 1.01430 0.77279 0.70577 0.73308 1.93472 1.85479 1.75940 1.45107 1.93414 1.84949 1.76064 1.45482 1.55445 1.73778 1.30803 1.26510 1.20704 0.92249 0.91433 0.89672 0.87718 1.23017 0.98689 0.92627 0.88745 1.86422 1.40985 1.57049 1.52803 1.20850 0.91248 0.96739 1.03153 1.20000 0.95858 0.97638 0.93160 1.21049 0.93380 0.97621 0.99773 1.21045 0.98255 0.99227 0.94322 1.20876 0.90665 1.00450 0.94700 1.98350 1.38432 1.75178 1.93320 1.20987 0.94195 0.98464 0.98959 1.21011 0.96521 0.98584 0.96032 0.90910 0.76120 0.90857 0.93344 0.77965 0.89900 0.89301 0.85107 0.85097 0.85144 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.28 13.96 55.43 0.77 -22.51 16 2 C 0.15 4.37 5.47 -17.82 -0.10 4.27 16 3 Si 0.80 20.60 26.54 -169.99 -4.51 16.09 16 4 H -0.25 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.22 -5.85 5.60 56.52 0.32 -5.53 16 7 C -1.02 -27.52 10.09 30.60 0.31 -27.21 16 8 H 0.12 3.27 5.77 -52.49 -0.30 2.97 16 9 S 2.67 65.70 4.22 -107.50 -0.45 65.25 16 10 O -1.01 -27.26 16.02 -57.17 -0.92 -28.17 16 11 O -1.01 -26.51 16.17 -57.17 -0.92 -27.43 16 12 N -1.11 -20.51 4.80 -4.89 -0.02 -20.53 16 13 C 0.17 2.61 2.69 -67.93 -0.18 2.43 16 14 H 0.10 1.73 7.50 -51.93 -0.39 1.34 16 15 C 0.05 0.69 6.88 37.15 0.26 0.95 16 16 O -0.57 -7.41 12.83 -35.23 -0.45 -7.86 16 17 C -0.08 -0.99 4.67 -27.88 -0.13 -1.12 16 18 C -0.07 -0.89 4.95 -104.62 -0.52 -1.41 16 19 C -0.10 -1.36 9.31 -39.59 -0.37 -1.73 16 20 C -0.11 -1.48 9.83 -39.55 -0.39 -1.87 16 21 C -0.04 -0.55 6.32 -39.50 -0.25 -0.80 16 22 Cl -0.08 -1.02 28.96 -51.86 -1.50 -2.52 16 23 C -0.11 -1.38 9.83 -39.55 -0.39 -1.77 16 24 C -0.10 -1.31 9.70 -39.59 -0.38 -1.69 16 25 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.41 6.68 8.72 -34.47 -0.30 6.38 16 27 H 0.07 1.25 5.63 -51.93 -0.29 0.96 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.37 3.39 9.12 45.56 0.42 3.80 16 30 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 31 H 0.09 1.05 7.67 -51.93 -0.40 0.65 16 32 H 0.13 1.57 7.94 -52.48 -0.42 1.15 16 33 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 324.10 15.07 4.88 4.88 Total: -1.00 -33.75 324.10 -8.28 -42.04 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -3.02 Total: 10.74 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: -2.14 Total: -29.96 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.75 Total: -43.04 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -2.29 Total: -63.47 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.51 Total: 16.09 kcal Atomic # 16 Polarization: 65.70 SS G_CDS: -0.45 Total: 65.25 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.75 -8.28 -42.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994076.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.613 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds