Wall clock time and date at job start Fri Apr 10 2020 14:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99886 * 2 1 4 4 H 1.48495 * 109.46997 * 269.99832 * 3 2 1 5 5 H 1.48502 * 109.47118 * 29.99804 * 3 2 1 6 6 H 1.48503 * 109.47387 * 149.99745 * 3 2 1 7 7 C 1.37881 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99746 * 0.02562 * 7 2 1 9 9 S 1.76202 * 120.00024 * 179.97438 * 7 2 1 10 10 O 1.42106 * 106.39786 * 66.46787 * 9 7 2 11 11 O 1.42095 * 106.40668 * 293.54514 * 9 7 2 12 12 N 1.65604 * 107.21505 * 180.02562 * 9 7 2 13 13 C 1.46497 * 119.99835 * 65.00488 * 12 9 7 14 14 H 1.09004 * 109.47207 * 24.99928 * 13 12 9 15 15 C 1.52995 * 109.47146 * 264.99802 * 13 12 9 16 16 O 1.42903 * 109.47148 * 294.99691 * 15 13 12 17 17 C 1.53005 * 109.47191 * 144.99766 * 13 12 9 18 18 C 1.50697 * 109.46832 * 294.99900 * 17 13 12 19 19 C 1.38247 * 119.98676 * 90.00295 * 18 17 13 20 20 C 1.38216 * 120.01497 * 179.97438 * 19 18 17 21 21 C 1.38357 * 119.98603 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.01134 * 180.02562 * 21 20 19 23 23 C 1.38347 * 119.97107 * 0.28224 * 21 20 19 24 24 C 1.38219 * 119.98927 * 359.42057 * 23 21 20 25 25 H 0.96998 * 120.00120 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99854 * 245.00192 * 12 9 7 27 27 H 1.08998 * 109.47437 * 54.99950 * 15 13 12 28 28 H 1.08998 * 109.47471 * 175.00247 * 15 13 12 29 29 H 0.96701 * 113.99953 * 179.97438 * 16 15 13 30 30 H 1.08996 * 109.47247 * 174.99608 * 17 13 12 31 31 H 1.09004 * 109.46969 * 54.99844 * 17 13 12 32 32 H 1.08003 * 119.99321 * 359.97223 * 19 18 17 33 33 H 1.08003 * 120.00776 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.00645 * 179.69150 * 23 21 20 35 35 H 1.07997 * 119.99421 * 180.29781 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 16 3.7666 -1.1939 -0.0001 10 8 4.1682 -0.6488 1.2492 11 8 4.1674 -0.6502 -1.2503 12 7 4.2568 -2.7757 0.0000 13 6 3.9611 -3.6343 -1.1496 14 1 3.8368 -3.0186 -2.0405 15 6 2.6721 -4.4147 -0.8850 16 8 2.8727 -5.3080 0.2122 17 6 5.1160 -4.6148 -1.3643 18 6 6.3583 -3.8517 -1.7457 19 6 7.2241 -3.4063 -0.7643 20 6 8.3640 -2.7069 -1.1134 21 6 8.6381 -2.4521 -2.4454 22 17 10.0700 -1.5743 -2.8847 23 6 7.7680 -2.8926 -3.4267 24 6 6.6316 -3.5972 -3.0767 25 1 -0.4850 0.8400 -0.0004 26 1 4.7398 -3.1337 0.7612 27 1 1.8686 -3.7185 -0.6445 28 1 2.4041 -4.9858 -1.7740 29 1 2.0945 -5.8363 0.4366 30 1 4.8579 -5.3110 -2.1622 31 1 5.2982 -5.1688 -0.4435 32 1 7.0098 -3.6049 0.2755 33 1 9.0401 -2.3586 -0.3466 34 1 7.9789 -2.6897 -4.4663 35 1 5.9548 -3.9453 -3.8429 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192994076.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:29 Heat of formation + Delta-G solvation = -146.627071 kcal Electronic energy + Delta-G solvation = -22983.311068 eV Core-core repulsion = 19325.542380 eV Total energy + Delta-G solvation = -3657.768688 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.048 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50055 -38.62171 -37.61249 -37.40630 -36.45089 -35.84973 -35.17067 -32.85449 -31.96640 -29.92237 -28.54623 -26.81341 -23.77927 -22.91544 -21.74494 -21.06035 -19.53828 -18.81085 -18.09505 -17.89416 -17.30396 -17.01298 -16.38878 -16.12453 -15.90983 -15.51032 -15.28877 -14.93932 -14.76494 -14.49889 -14.40746 -14.18307 -13.94432 -13.44671 -13.13398 -13.03557 -12.72398 -12.69203 -12.58512 -12.54364 -12.21642 -12.12190 -11.98334 -11.79077 -11.70173 -11.33851 -11.13037 -10.70812 -10.22394 -9.93692 -9.44406 -8.95515 -7.49410 0.16984 0.23048 0.38706 1.03361 1.12020 1.16977 1.20435 1.88222 2.42873 2.60629 2.68203 3.35953 3.51879 3.77496 3.85535 4.00168 4.09386 4.19970 4.33563 4.41502 4.43751 4.55830 4.58448 4.74174 4.75915 4.96424 5.03959 5.12869 5.28623 5.29496 5.33766 5.42184 5.68700 5.92204 6.09046 6.36857 6.56674 7.02520 8.20773 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.005128 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.289137 B = 5458.398526 C = 6774.750397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.115 3.885 3 Si 0.814 3.186 4 H -0.240 1.240 5 H -0.222 1.222 6 H -0.235 1.235 7 C -1.035 5.035 8 H 0.121 0.879 9 S 2.691 3.309 10 O -1.038 7.038 11 O -1.028 7.028 12 N -1.096 6.096 13 C 0.156 3.844 14 H 0.094 0.906 15 C 0.054 3.946 16 O -0.575 6.575 17 C -0.068 4.068 18 C -0.080 4.080 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.056 4.056 22 Cl -0.078 7.078 23 C -0.117 4.117 24 C -0.109 4.109 25 H 0.290 0.710 26 H 0.418 0.582 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.393 0.607 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.002 -11.948 -5.673 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.102 4.102 3 Si 0.632 3.368 4 H -0.163 1.163 5 H -0.144 1.144 6 H -0.158 1.158 7 C -1.167 5.167 8 H 0.139 0.861 9 S 2.791 3.209 10 O -1.028 7.028 11 O -1.018 7.018 12 N -0.856 5.856 13 C 0.048 3.952 14 H 0.111 0.889 15 C -0.026 4.026 16 O -0.382 6.382 17 C -0.107 4.107 18 C -0.080 4.080 19 C -0.134 4.134 20 C -0.144 4.144 21 C -0.082 4.082 22 Cl -0.049 7.049 23 C -0.135 4.135 24 C -0.127 4.127 25 H 0.101 0.899 26 H 0.253 0.747 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.242 0.758 30 H 0.133 0.867 31 H 0.114 0.886 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.166 0.834 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.022 -10.697 -5.887 17.135 hybrid contribution -0.909 0.521 0.473 1.149 sum 11.113 -10.176 -5.414 16.011 Atomic orbital electron populations 1.69986 1.07142 1.30268 1.40619 1.25021 0.95496 1.00912 0.88793 0.87649 0.82886 0.83771 0.82492 1.16303 1.14378 1.15780 1.31114 1.17760 1.01970 1.65899 0.86123 1.00652 0.76004 0.71943 0.72273 1.93426 1.85402 1.77768 1.46185 1.93383 1.84730 1.77556 1.46114 1.54955 1.73303 1.29218 1.28094 1.21034 0.94563 0.91644 0.87910 0.88854 1.22843 0.96605 0.92607 0.90527 1.86372 1.42330 1.56940 1.52550 1.20804 0.89200 0.95995 1.04707 1.20230 0.96274 0.97974 0.93518 1.21313 0.93649 0.97830 1.00576 1.21274 0.98742 0.99573 0.94794 1.21099 0.91166 1.00841 0.95095 1.98345 1.38203 1.75100 1.93269 1.21298 0.94177 0.98272 0.99789 1.21383 0.96729 0.98057 0.96517 0.89937 0.74738 0.94249 0.89721 0.75841 0.86695 0.88563 0.84174 0.84176 0.83444 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.98 13.96 21.45 0.30 -47.69 16 2 C 0.11 6.48 5.47 84.66 0.46 6.94 16 3 Si 0.81 41.10 26.54 68.60 1.82 42.92 16 4 H -0.24 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.22 -9.91 7.11 99.48 0.71 -9.20 16 6 H -0.24 -12.41 5.60 99.48 0.56 -11.85 16 7 C -1.03 -56.19 10.09 67.74 0.68 -55.51 16 8 H 0.12 6.47 5.77 -2.91 -0.02 6.45 16 9 S 2.69 131.64 4.22 -56.49 -0.24 131.40 16 10 O -1.04 -56.02 16.02 -128.00 -2.05 -58.07 16 11 O -1.03 -53.69 16.17 -128.00 -2.07 -55.76 16 12 N -1.10 -39.29 4.80 -169.39 -0.81 -40.10 16 13 C 0.16 4.54 2.69 44.99 0.12 4.66 16 14 H 0.09 2.95 7.50 -2.38 -0.02 2.93 16 15 C 0.05 1.41 6.88 71.98 0.50 1.91 16 16 O -0.57 -13.48 12.83 -148.98 -1.91 -15.39 16 17 C -0.07 -1.47 4.67 29.85 0.14 -1.33 16 18 C -0.08 -1.96 4.95 -19.86 -0.10 -2.06 16 19 C -0.12 -2.99 9.31 22.27 0.21 -2.78 16 20 C -0.13 -3.29 9.83 22.29 0.22 -3.07 16 21 C -0.06 -1.46 6.32 22.32 0.14 -1.31 16 22 Cl -0.08 -1.88 28.96 -2.72 -0.08 -1.96 16 23 C -0.12 -2.81 9.83 22.29 0.22 -2.59 16 24 C -0.11 -2.51 9.70 22.27 0.22 -2.29 16 25 H 0.29 14.85 8.31 -92.71 -0.77 14.08 16 26 H 0.42 13.19 8.72 -96.75 -0.84 12.34 16 27 H 0.04 1.32 5.63 -2.39 -0.01 1.30 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.39 6.07 9.12 -74.06 -0.68 5.40 16 30 H 0.11 1.77 8.09 -2.39 -0.02 1.75 16 31 H 0.10 1.96 7.67 -2.38 -0.02 1.94 16 32 H 0.14 3.19 7.94 -2.91 -0.02 3.17 16 33 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -71.69 324.10 -2.75 -74.44 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: -0.52 Total: 27.63 kcal Atomic # 6 Polarization: -60.24 SS G_CDS: 2.81 Total: -57.43 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -0.51 Total: -87.78 kcal Atomic # 8 Polarization: -123.19 SS G_CDS: -6.03 Total: -129.22 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.82 Total: 42.92 kcal Atomic # 16 Polarization: 131.64 SS G_CDS: -0.24 Total: 131.40 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.96 kcal Total: -71.69 -2.75 -74.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994076.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.186 kcal (2) G-P(sol) polarization free energy of solvation -71.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds