Wall clock time and date at job start Fri Apr 10 2020 14:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00300 * 2 1 4 4 H 1.48497 * 109.46959 * 270.00073 * 3 2 1 5 5 H 1.48502 * 109.46972 * 29.99811 * 3 2 1 6 6 H 1.48501 * 109.47169 * 149.99646 * 3 2 1 7 7 C 1.37879 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99664 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00072 * 180.02562 * 7 2 1 10 10 O 1.42101 * 106.40415 * 66.45610 * 9 7 2 11 11 O 1.42099 * 106.40318 * 293.53671 * 9 7 2 12 12 N 1.65603 * 107.21601 * 179.97438 * 9 7 2 13 13 C 1.46497 * 120.00045 * 64.99913 * 12 9 7 14 14 H 1.08991 * 109.47169 * 335.00057 * 13 12 9 15 15 C 1.52999 * 109.47084 * 94.99735 * 13 12 9 16 16 O 1.42903 * 109.47256 * 65.00345 * 15 13 12 17 17 C 1.53002 * 109.46869 * 214.99746 * 13 12 9 18 18 C 1.50699 * 109.47266 * 65.00249 * 17 13 12 19 19 C 1.38230 * 120.00492 * 264.72623 * 18 17 13 20 20 C 1.38220 * 120.01457 * 179.77062 * 19 18 17 21 21 C 1.38272 * 120.02233 * 0.49788 * 20 19 18 22 22 C 1.38187 * 120.01181 * 359.75220 * 21 20 19 23 23 C 1.38332 * 120.00939 * 84.99353 * 18 17 13 24 24 Cl 1.73599 * 120.01137 * 359.95907 * 23 18 17 25 25 H 0.96998 * 119.99868 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99948 * 244.99851 * 12 9 7 27 27 H 1.08997 * 109.47286 * 304.99906 * 15 13 12 28 28 H 1.09008 * 109.47201 * 184.99686 * 15 13 12 29 29 H 0.96700 * 114.00311 * 180.02562 * 16 15 13 30 30 H 1.09006 * 109.46629 * 184.99734 * 17 13 12 31 31 H 1.08992 * 109.47234 * 304.99810 * 17 13 12 32 32 H 1.07999 * 119.99760 * 359.97438 * 19 18 17 33 33 H 1.08001 * 119.99194 * 180.22622 * 20 19 18 34 34 H 1.08005 * 119.98859 * 179.77013 * 21 20 19 35 35 H 1.08007 * 120.00646 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 16 3.7665 -1.1941 0.0012 10 8 4.1674 -0.6493 1.2509 11 8 4.1683 -0.6500 -1.2485 12 7 4.2567 -2.7759 0.0025 13 6 3.9618 -3.6350 -1.1469 14 1 3.0861 -3.2526 -1.6711 15 6 5.1609 -3.6451 -2.0971 16 8 6.2786 -4.2538 -1.4472 17 6 3.6839 -5.0591 -0.6611 18 6 2.4308 -5.0688 0.1758 19 6 2.5180 -4.9754 1.5522 20 6 1.3685 -4.9795 2.3197 21 6 0.1312 -5.0875 1.7120 22 6 0.0431 -5.1862 0.3365 23 6 1.1932 -5.1769 -0.4327 24 17 1.0832 -5.3002 -2.1608 25 1 -0.4850 0.8400 -0.0004 26 1 4.7391 -3.1336 0.7642 27 1 5.4143 -2.6216 -2.3732 28 1 4.9093 -4.2117 -2.9937 29 1 7.0764 -4.2941 -1.9921 30 1 3.5521 -5.7167 -1.5204 31 1 4.5241 -5.4088 -0.0614 32 1 3.4844 -4.8958 2.0278 33 1 1.4370 -4.9028 3.3949 34 1 -0.7664 -5.0945 2.3125 35 1 -0.9235 -5.2701 -0.1382 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192994697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:34 Heat of formation + Delta-G solvation = -117.873336 kcal Electronic energy + Delta-G solvation = -23592.876750 eV Core-core repulsion = 19936.354918 eV Total energy + Delta-G solvation = -3656.521832 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.048 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.33486 -37.38852 -36.13986 -35.54803 -34.77363 -34.37316 -32.97486 -31.72422 -30.44719 -28.65910 -26.34203 -25.81612 -22.44734 -21.73373 -20.53246 -19.15524 -17.62128 -17.15170 -16.75046 -16.45317 -15.85514 -15.32494 -15.02397 -14.88985 -14.32527 -14.04455 -13.61642 -13.53048 -13.23209 -13.02406 -12.80731 -12.79544 -12.44626 -11.75306 -11.41568 -11.39696 -11.27938 -11.19865 -11.07161 -10.84528 -10.69407 -10.57109 -10.46753 -10.37056 -9.86348 -9.69193 -9.20615 -9.16226 -8.59649 -8.53616 -8.29841 -6.74519 -5.26786 1.46690 1.58109 2.14398 2.43521 3.09368 3.19945 3.29820 3.91892 3.98848 4.32414 4.52090 4.65950 4.86725 5.01518 5.19571 5.29041 5.34134 5.48324 5.50736 5.61060 5.65353 5.73911 5.85963 5.93866 6.08355 6.19308 6.26594 6.28897 6.50732 6.60452 6.70076 6.80467 7.09709 7.53235 7.78237 7.84438 8.30652 8.77264 10.37493 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.011864 B = 0.007407 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.427997 B = 3779.360883 C = 4799.345820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.156 3.844 3 Si 0.797 3.203 4 H -0.248 1.248 5 H -0.256 1.256 6 H -0.222 1.222 7 C -1.009 5.009 8 H 0.124 0.876 9 S 2.672 3.328 10 O -1.011 7.011 11 O -1.015 7.015 12 N -1.110 6.110 13 C 0.171 3.829 14 H 0.104 0.896 15 C 0.056 3.944 16 O -0.568 6.568 17 C -0.083 4.083 18 C -0.067 4.067 19 C -0.098 4.098 20 C -0.110 4.110 21 C -0.110 4.110 22 C -0.103 4.103 23 C -0.028 4.028 24 Cl -0.076 7.076 25 H 0.278 0.722 26 H 0.406 0.594 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.372 0.628 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.775 -12.853 -1.076 13.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.063 4.063 3 Si 0.618 3.382 4 H -0.171 1.171 5 H -0.181 1.181 6 H -0.144 1.144 7 C -1.144 5.144 8 H 0.142 0.858 9 S 2.774 3.226 10 O -1.001 7.001 11 O -1.005 7.005 12 N -0.865 5.865 13 C 0.063 3.937 14 H 0.121 0.879 15 C -0.023 4.023 16 O -0.373 6.373 17 C -0.122 4.122 18 C -0.067 4.067 19 C -0.116 4.116 20 C -0.128 4.128 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.054 4.054 24 Cl -0.047 7.047 25 H 0.089 0.911 26 H 0.238 0.762 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.218 0.782 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.645 -12.019 -0.911 12.593 hybrid contribution -0.049 0.537 -0.320 0.627 sum 3.596 -11.483 -1.231 12.095 Atomic orbital electron populations 1.69996 1.06470 1.28736 1.39790 1.24368 0.94695 0.98499 0.88717 0.87933 0.83634 0.84949 0.81703 1.17146 1.18056 1.14376 1.30426 1.15372 1.02204 1.66402 0.85817 1.01429 0.77468 0.70477 0.73273 1.93467 1.85601 1.75982 1.45052 1.93393 1.85113 1.76316 1.45652 1.55443 1.73552 1.30983 1.26514 1.20649 0.95900 0.90554 0.86621 0.87858 1.22882 0.87095 0.97909 0.94457 1.86451 1.22473 1.83202 1.45146 1.20859 0.94690 0.96911 0.99696 1.19644 0.93408 0.99430 0.94265 1.20951 0.98959 0.99367 0.92318 1.21181 0.92497 0.99017 1.00146 1.21017 0.97958 0.99919 0.93904 1.20954 0.97199 1.00195 0.93846 1.20733 0.94719 1.05811 0.84143 1.98338 1.98426 1.96432 1.11501 0.91118 0.76176 0.91591 0.93175 0.78167 0.89749 0.89354 0.85403 0.85714 0.85573 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.52 13.96 55.43 0.77 -22.74 16 2 C 0.16 4.48 5.47 -17.82 -0.10 4.38 16 3 Si 0.80 20.75 26.54 -169.99 -4.51 16.24 16 4 H -0.25 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.22 -5.92 5.61 56.52 0.32 -5.60 16 7 C -1.01 -27.86 10.12 30.60 0.31 -27.55 16 8 H 0.12 3.47 8.06 -52.49 -0.42 3.05 16 9 S 2.67 66.90 4.15 -107.50 -0.45 66.45 16 10 O -1.01 -27.48 16.02 -57.17 -0.92 -28.40 16 11 O -1.01 -26.90 16.05 -57.17 -0.92 -27.81 16 12 N -1.11 -21.39 5.02 -4.90 -0.02 -21.41 16 13 C 0.17 2.91 2.56 -67.93 -0.17 2.74 16 14 H 0.10 1.95 7.65 -51.93 -0.40 1.56 16 15 C 0.06 0.82 6.88 37.16 0.26 1.08 16 16 O -0.57 -7.33 12.83 -35.23 -0.45 -7.79 16 17 C -0.08 -1.19 4.18 -27.88 -0.12 -1.30 16 18 C -0.07 -1.04 4.89 -104.59 -0.51 -1.55 16 19 C -0.10 -1.46 9.55 -39.59 -0.38 -1.84 16 20 C -0.11 -1.59 10.05 -39.58 -0.40 -1.99 16 21 C -0.11 -1.59 10.05 -39.59 -0.40 -1.99 16 22 C -0.10 -1.60 9.83 -39.55 -0.39 -1.99 16 23 C -0.03 -0.45 6.31 -39.50 -0.25 -0.70 16 24 Cl -0.08 -1.15 27.20 -51.86 -1.41 -2.56 16 25 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.41 6.93 8.84 -34.47 -0.30 6.62 16 27 H 0.07 1.09 7.59 -51.93 -0.39 0.70 16 28 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.37 3.11 9.12 45.56 0.42 3.52 16 30 H 0.08 1.09 7.13 -51.93 -0.37 0.72 16 31 H 0.09 1.16 7.64 -51.93 -0.40 0.77 16 32 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -33.90 326.16 -8.34 -42.24 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -3.20 Total: 11.58 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: -2.15 Total: -30.71 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.75 Total: -44.16 kcal Atomic # 8 Polarization: -61.71 SS G_CDS: -2.29 Total: -64.00 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.51 Total: 16.24 kcal Atomic # 16 Polarization: 66.90 SS G_CDS: -0.45 Total: 66.45 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.41 Total: -2.56 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.90 -8.34 -42.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.636 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds