Wall clock time and date at job start Fri Apr 10 2020 14:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00300 * 2 1 4 4 H 1.48497 * 109.46959 * 270.00073 * 3 2 1 5 5 H 1.48502 * 109.46972 * 29.99811 * 3 2 1 6 6 H 1.48501 * 109.47169 * 149.99646 * 3 2 1 7 7 C 1.37879 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99664 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00072 * 180.02562 * 7 2 1 10 10 O 1.42101 * 106.40415 * 66.45610 * 9 7 2 11 11 O 1.42099 * 106.40318 * 293.53671 * 9 7 2 12 12 N 1.65603 * 107.21601 * 179.97438 * 9 7 2 13 13 C 1.46497 * 120.00045 * 64.99913 * 12 9 7 14 14 H 1.08991 * 109.47169 * 335.00057 * 13 12 9 15 15 C 1.52999 * 109.47084 * 94.99735 * 13 12 9 16 16 O 1.42903 * 109.47256 * 65.00345 * 15 13 12 17 17 C 1.53002 * 109.46869 * 214.99746 * 13 12 9 18 18 C 1.50699 * 109.47266 * 65.00249 * 17 13 12 19 19 C 1.38230 * 120.00492 * 264.72623 * 18 17 13 20 20 C 1.38220 * 120.01457 * 179.77062 * 19 18 17 21 21 C 1.38272 * 120.02233 * 0.49788 * 20 19 18 22 22 C 1.38187 * 120.01181 * 359.75220 * 21 20 19 23 23 C 1.38332 * 120.00939 * 84.99353 * 18 17 13 24 24 Cl 1.73599 * 120.01137 * 359.95907 * 23 18 17 25 25 H 0.96998 * 119.99868 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99948 * 244.99851 * 12 9 7 27 27 H 1.08997 * 109.47286 * 304.99906 * 15 13 12 28 28 H 1.09008 * 109.47201 * 184.99686 * 15 13 12 29 29 H 0.96700 * 114.00311 * 180.02562 * 16 15 13 30 30 H 1.09006 * 109.46629 * 184.99734 * 17 13 12 31 31 H 1.08992 * 109.47234 * 304.99810 * 17 13 12 32 32 H 1.07999 * 119.99760 * 359.97438 * 19 18 17 33 33 H 1.08001 * 119.99194 * 180.22622 * 20 19 18 34 34 H 1.08005 * 119.98859 * 179.77013 * 21 20 19 35 35 H 1.08007 * 120.00646 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 16 3.7665 -1.1941 0.0012 10 8 4.1674 -0.6493 1.2509 11 8 4.1683 -0.6500 -1.2485 12 7 4.2567 -2.7759 0.0025 13 6 3.9618 -3.6350 -1.1469 14 1 3.0861 -3.2526 -1.6711 15 6 5.1609 -3.6451 -2.0971 16 8 6.2786 -4.2538 -1.4472 17 6 3.6839 -5.0591 -0.6611 18 6 2.4308 -5.0688 0.1758 19 6 2.5180 -4.9754 1.5522 20 6 1.3685 -4.9795 2.3197 21 6 0.1312 -5.0875 1.7120 22 6 0.0431 -5.1862 0.3365 23 6 1.1932 -5.1769 -0.4327 24 17 1.0832 -5.3002 -2.1608 25 1 -0.4850 0.8400 -0.0004 26 1 4.7391 -3.1336 0.7642 27 1 5.4143 -2.6216 -2.3732 28 1 4.9093 -4.2117 -2.9937 29 1 7.0764 -4.2941 -1.9921 30 1 3.5521 -5.7167 -1.5204 31 1 4.5241 -5.4088 -0.0614 32 1 3.4844 -4.8958 2.0278 33 1 1.4370 -4.9028 3.3949 34 1 -0.7664 -5.0945 2.3125 35 1 -0.9235 -5.2701 -0.1382 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192994697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:34 Heat of formation + Delta-G solvation = -144.885474 kcal Electronic energy + Delta-G solvation = -23594.048084 eV Core-core repulsion = 19936.354918 eV Total energy + Delta-G solvation = -3657.693166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 319.048 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.48989 -38.58577 -37.58458 -37.31877 -36.44994 -35.97970 -35.12338 -33.02441 -31.58531 -29.96889 -28.48788 -26.94758 -23.59768 -22.94727 -21.80096 -21.09614 -19.43773 -18.76959 -18.09456 -17.90847 -17.31125 -16.97023 -16.39436 -16.24487 -15.69785 -15.65222 -15.31394 -14.89602 -14.81685 -14.66861 -14.31429 -13.97512 -13.81885 -13.43397 -13.14844 -12.94026 -12.66802 -12.62692 -12.56005 -12.52920 -12.38255 -12.22729 -11.99983 -11.77059 -11.54750 -11.29859 -11.13949 -10.82671 -10.23791 -9.72560 -9.47348 -8.90124 -7.43132 0.19607 0.30795 0.42990 1.04864 1.13795 1.21526 1.24874 1.90481 2.47313 2.59663 2.76623 3.33718 3.48676 3.71798 3.89845 4.01533 4.10292 4.21416 4.34200 4.38902 4.49257 4.51301 4.56939 4.71627 4.78088 4.92196 5.02524 5.13602 5.25187 5.37749 5.44638 5.54715 5.60303 5.98893 6.12316 6.36500 6.61320 7.00350 8.26662 Molecular weight = 319.05amu Principal moments of inertia in cm(-1) A = 0.011864 B = 0.007407 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.427997 B = 3779.360883 C = 4799.345820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.116 3.884 3 Si 0.816 3.184 4 H -0.242 1.242 5 H -0.223 1.223 6 H -0.233 1.233 7 C -1.022 5.022 8 H 0.110 0.890 9 S 2.691 3.309 10 O -1.034 7.034 11 O -1.031 7.031 12 N -1.095 6.095 13 C 0.161 3.839 14 H 0.080 0.920 15 C 0.062 3.938 16 O -0.573 6.573 17 C -0.072 4.072 18 C -0.081 4.081 19 C -0.110 4.110 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.047 4.047 24 Cl -0.075 7.075 25 H 0.288 0.712 26 H 0.419 0.581 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.395 0.605 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.795 -13.508 -0.840 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.101 4.101 3 Si 0.634 3.366 4 H -0.165 1.165 5 H -0.146 1.146 6 H -0.156 1.156 7 C -1.156 5.156 8 H 0.128 0.872 9 S 2.792 3.208 10 O -1.024 7.024 11 O -1.021 7.021 12 N -0.854 5.854 13 C 0.053 3.947 14 H 0.098 0.902 15 C -0.017 4.017 16 O -0.380 6.380 17 C -0.110 4.110 18 C -0.082 4.082 19 C -0.128 4.128 20 C -0.138 4.138 21 C -0.136 4.136 22 C -0.141 4.141 23 C -0.073 4.073 24 Cl -0.046 7.046 25 H 0.098 0.902 26 H 0.254 0.746 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.244 0.756 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.657 -12.671 -0.678 13.516 hybrid contribution -0.357 0.630 -0.399 0.827 sum 4.300 -12.041 -1.078 12.831 Atomic orbital electron populations 1.70016 1.07172 1.29979 1.40606 1.25000 0.95444 1.00768 0.88855 0.87627 0.82899 0.83736 0.82313 1.16534 1.14553 1.15596 1.30821 1.17360 1.01607 1.65772 0.87199 1.00649 0.76094 0.71743 0.72358 1.93427 1.85420 1.77605 1.45926 1.93368 1.84825 1.77691 1.46229 1.54943 1.73110 1.29415 1.27979 1.20872 0.96430 0.91331 0.86048 0.90165 1.22665 0.86860 0.97511 0.94704 1.86389 1.23070 1.82698 1.45891 1.20812 0.94682 0.95206 1.00343 1.19879 0.93696 0.99735 0.94883 1.21302 1.00114 0.99059 0.92306 1.21571 0.92335 0.98317 1.01538 1.21375 0.99132 0.99297 0.93840 1.21229 0.97584 1.00677 0.94601 1.20981 0.95369 1.06548 0.84432 1.98326 1.98448 1.96466 1.11384 0.90167 0.74615 0.93753 0.90221 0.75592 0.88219 0.87716 0.83570 0.83359 0.83437 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.58 13.96 21.45 0.30 -48.28 16 2 C 0.12 6.64 5.47 84.66 0.46 7.10 16 3 Si 0.82 41.34 26.54 68.60 1.82 43.16 16 4 H -0.24 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.22 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.23 -12.24 5.61 99.48 0.56 -11.69 16 7 C -1.02 -56.71 10.12 67.73 0.69 -56.03 16 8 H 0.11 6.27 8.06 -2.91 -0.02 6.25 16 9 S 2.69 133.49 4.15 -56.49 -0.23 133.26 16 10 O -1.03 -55.55 16.02 -128.00 -2.05 -57.60 16 11 O -1.03 -54.26 16.05 -128.00 -2.05 -56.32 16 12 N -1.09 -40.87 5.02 -169.40 -0.85 -41.72 16 13 C 0.16 5.25 2.56 44.99 0.12 5.36 16 14 H 0.08 3.01 7.65 -2.39 -0.02 3.00 16 15 C 0.06 1.70 6.88 71.98 0.50 2.20 16 16 O -0.57 -13.04 12.83 -148.98 -1.91 -14.96 16 17 C -0.07 -1.92 4.18 29.85 0.12 -1.79 16 18 C -0.08 -2.45 4.89 -19.84 -0.10 -2.55 16 19 C -0.11 -3.12 9.55 22.26 0.21 -2.90 16 20 C -0.12 -3.28 10.05 22.27 0.22 -3.06 16 21 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 22 C -0.12 -3.77 9.83 22.29 0.22 -3.55 16 23 C -0.05 -1.50 6.31 22.32 0.14 -1.36 16 24 Cl -0.08 -2.25 27.20 -2.72 -0.07 -2.32 16 25 H 0.29 15.00 8.31 -92.71 -0.77 14.22 16 26 H 0.42 13.53 8.84 -96.75 -0.85 12.67 16 27 H 0.04 1.41 7.59 -2.39 -0.02 1.39 16 28 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.39 5.28 9.12 -74.06 -0.68 4.60 16 30 H 0.10 2.36 7.13 -2.38 -0.02 2.34 16 31 H 0.10 2.45 7.64 -2.39 -0.02 2.43 16 32 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 35 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -71.58 326.16 -2.79 -74.36 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.54 Total: 30.12 kcal Atomic # 6 Polarization: -62.51 SS G_CDS: 2.81 Total: -59.71 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -0.55 Total: -90.01 kcal Atomic # 8 Polarization: -122.86 SS G_CDS: -6.02 Total: -128.87 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.82 Total: 43.16 kcal Atomic # 16 Polarization: 133.49 SS G_CDS: -0.23 Total: 133.26 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.07 Total: -2.32 kcal Total: -71.58 -2.79 -74.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192994697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.523 kcal (2) G-P(sol) polarization free energy of solvation -71.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds