Wall clock time and date at job start Fri Apr 10 2020 14:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30690 * 125.51982 * 2 1 4 4 C 1.33714 * 109.50120 * 179.97438 * 3 2 1 5 5 N 1.48025 * 126.06444 * 179.73315 * 4 3 2 6 6 O 1.31701 * 119.99455 * 0.02742 * 5 4 3 7 7 O 1.31701 * 119.99978 * 180.02562 * 5 4 3 8 8 C 1.36204 * 107.87798 * 0.02562 * 4 3 2 9 9 S 1.76197 * 126.73478 * 179.97438 * 8 4 3 10 10 C 1.71206 * 99.99961 * 270.02164 * 9 8 4 11 11 H 1.07999 * 119.99730 * 359.97438 * 10 9 8 12 12 C 1.46319 * 120.00201 * 180.02562 * 10 9 8 13 13 N 1.29583 * 119.99941 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00261 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46839 * 89.99919 * 14 12 10 16 16 H 1.48503 * 109.47301 * 209.99851 * 14 12 10 17 17 H 1.48498 * 109.46806 * 330.00146 * 14 12 10 18 18 N 1.35124 * 125.51122 * 179.97438 * 2 1 3 19 19 C 1.46492 * 126.43950 * 0.02562 * 18 2 1 20 20 C 1.50695 * 109.47718 * 89.97256 * 19 18 2 21 21 C 1.38240 * 119.99933 * 269.73299 * 20 19 18 22 22 C 1.38232 * 119.99950 * 179.76322 * 21 20 19 23 23 C 1.38231 * 120.00115 * 0.49963 * 22 21 20 24 24 C 1.38239 * 119.99856 * 359.75317 * 23 22 21 25 25 C 1.38231 * 120.00268 * 89.99583 * 20 19 18 26 26 H 1.08993 * 109.47198 * 90.01991 * 1 2 3 27 27 H 1.08997 * 109.47657 * 210.03079 * 1 2 3 28 28 H 1.09002 * 109.47094 * 330.02738 * 1 2 3 29 29 H 0.96999 * 120.00002 * 179.97438 * 13 12 10 30 30 H 1.09001 * 109.47232 * 209.97243 * 19 18 2 31 31 H 1.09000 * 109.46934 * 329.96992 * 19 18 2 32 32 H 1.08007 * 119.99836 * 359.97438 * 21 20 19 33 33 H 1.08004 * 120.00275 * 180.22973 * 22 21 20 34 34 H 1.07997 * 120.00312 * 179.72634 * 23 22 21 35 35 H 1.07997 * 119.99718 * 179.97438 * 24 23 22 36 36 H 1.08003 * 119.99773 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2662 1.0637 0.0000 4 6 3.5515 0.6947 0.0006 5 7 4.7192 1.6043 -0.0048 6 8 4.5377 2.9088 -0.0103 7 8 5.9396 1.1092 -0.0041 8 6 3.5957 -0.6666 0.0004 9 16 5.0412 -1.6741 0.0003 10 6 5.2855 -1.8433 -1.6858 11 1 4.6067 -1.3702 -2.3799 12 6 6.4133 -2.6297 -2.1864 13 7 7.2275 -3.1977 -1.3535 14 14 6.6795 -2.8149 -4.0260 15 1 7.5509 -1.7155 -4.5132 16 1 7.3290 -4.1213 -4.3032 17 1 5.3701 -2.7550 -4.7240 18 7 2.2918 -1.0999 0.0005 19 6 1.8380 -2.4927 0.0006 20 6 1.6821 -2.9705 -1.4201 21 6 0.4708 -2.8238 -2.0698 22 6 0.3293 -3.2576 -3.3746 23 6 1.3960 -3.8476 -4.0263 24 6 2.6058 -3.9991 -3.3749 25 6 2.7489 -3.5605 -2.0719 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3634 -0.8897 0.5143 28 1 -0.3633 0.8902 0.5134 29 1 7.9749 -3.7193 -1.6854 30 1 2.5716 -3.1139 0.5144 31 1 0.8793 -2.5624 0.5146 32 1 -0.3641 -2.3670 -1.5589 33 1 -0.6160 -3.1396 -3.8834 34 1 1.2842 -4.1905 -5.0443 35 1 3.4391 -4.4604 -3.8840 36 1 3.6939 -3.6794 -1.5627 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002033248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:18 Heat of formation + Delta-G solvation = 114.806593 kcal Electronic energy + Delta-G solvation = -24612.325140 eV Core-core repulsion = 21000.618667 eV Total energy + Delta-G solvation = -3611.706473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.078 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -42.26185 -39.06100 -37.81125 -34.66967 -33.49572 -32.87955 -31.97507 -31.06645 -30.68714 -28.00248 -26.89911 -25.62948 -24.79909 -22.46698 -21.66538 -21.08234 -20.09023 -18.53541 -17.85197 -17.02320 -16.87895 -16.15370 -15.96329 -15.13000 -15.09768 -14.96405 -14.77756 -14.48559 -13.79122 -13.34242 -13.24352 -13.12522 -12.83271 -12.65734 -12.41642 -12.21990 -11.55129 -11.37703 -11.33056 -11.14161 -10.84489 -10.61459 -10.48666 -10.40050 -10.19068 -9.84839 -9.80820 -9.32743 -9.23618 -8.77839 -8.67542 -8.28142 -7.13747 -6.68125 -4.12534 0.28741 1.25511 1.60305 1.68131 1.86635 2.50370 2.90688 2.99682 3.02971 3.10408 3.15482 3.95761 3.98620 4.32892 4.53375 4.68038 4.69006 4.76949 5.04419 5.09415 5.20888 5.23808 5.29956 5.36306 5.40827 5.56562 5.64520 5.74886 5.80350 5.98054 6.07618 6.28968 6.53861 6.62352 6.75609 6.79938 6.92403 7.18174 7.19915 7.38732 7.94070 8.04694 8.69512 10.35481 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.008514 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.165993 B = 3288.037983 C = 5497.982219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.231 3.769 3 N -0.454 5.454 4 C 0.100 3.900 5 N 0.023 4.977 6 O -0.208 6.208 7 O -0.113 6.113 8 C 0.076 3.924 9 S 0.122 5.878 10 C -0.604 4.604 11 H 0.077 0.923 12 C 0.100 3.900 13 N -0.831 5.831 14 Si 0.910 3.090 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.264 1.264 18 N -0.424 5.424 19 C 0.143 3.857 20 C -0.128 4.128 21 C -0.103 4.103 22 C -0.138 4.138 23 C -0.111 4.111 24 C -0.122 4.122 25 C -0.062 4.062 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.282 0.718 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.325 -5.695 0.011 15.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.036 4.036 3 N -0.176 5.176 4 C -0.117 4.117 5 N 0.500 4.500 6 O -0.389 6.389 7 O -0.314 6.314 8 C -0.157 4.157 9 S 0.354 5.646 10 C -0.751 4.751 11 H 0.096 0.904 12 C -0.119 4.119 13 N -0.460 5.460 14 Si 0.735 3.265 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.188 1.188 18 N -0.108 5.108 19 C 0.022 3.978 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.156 4.156 23 C -0.129 4.129 24 C -0.140 4.140 25 C -0.081 4.081 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.340 -5.846 0.943 15.514 hybrid contribution 0.181 0.190 -2.395 2.409 sum -14.158 -5.657 -1.451 15.316 Atomic orbital electron populations 1.20302 0.83832 1.04380 1.04046 1.23316 0.95815 0.80395 1.04100 1.69461 0.99358 1.29296 1.19470 1.19682 0.85785 0.86379 1.19811 1.49039 1.02305 1.02070 0.96598 1.96218 1.94149 0.90614 1.57936 1.96402 1.01592 1.80676 1.52722 1.24912 0.92784 0.96600 1.01360 1.82497 1.13462 1.58305 1.10335 1.23433 1.18164 1.42038 0.91417 0.90448 1.26227 0.93461 0.93319 0.98914 1.68945 1.13155 1.27161 1.36749 0.86278 0.79379 0.78178 0.82633 1.19585 1.20324 1.18789 1.46724 1.05316 1.07982 1.50748 1.20867 1.02382 0.78952 0.95614 1.19772 0.94903 1.02665 0.95495 1.20966 0.96640 0.99515 0.95089 1.20968 0.98859 1.00790 0.94952 1.21213 0.93486 0.98690 0.99534 1.21222 0.97157 1.00365 0.95219 1.21786 0.98877 0.92658 0.94737 0.89571 0.90139 0.88728 0.90666 0.86360 0.87829 0.86496 0.86413 0.86501 0.86099 0.82455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 65. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.00 36.00 0.36 -0.30 16 2 C 0.23 3.74 7.90 -155.19 -1.23 2.52 16 3 N -0.45 -9.39 11.22 -7.57 -0.08 -9.48 16 4 C 0.10 2.31 8.14 -145.36 -1.18 1.13 16 5 N 0.02 0.56 4.99 32.82 0.16 0.73 16 6 O -0.21 -5.19 19.97 -31.57 -0.63 -5.82 16 7 O -0.11 -2.93 18.16 -31.57 -0.57 -3.50 16 8 C 0.08 1.62 6.52 -15.79 -0.10 1.52 16 9 S 0.12 2.83 19.23 -107.50 -2.07 0.76 16 10 C -0.60 -15.16 7.03 33.98 0.24 -14.92 16 11 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 12 C 0.10 2.48 5.68 -15.25 -0.09 2.39 16 13 N -0.83 -21.22 13.25 55.97 0.74 -20.48 16 14 Si 0.91 19.50 29.64 -169.99 -5.04 14.46 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 17 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 18 N -0.42 -7.14 2.75 -113.59 -0.31 -7.45 16 19 C 0.14 1.87 5.91 -5.20 -0.03 1.84 16 20 C -0.13 -1.80 5.46 -104.63 -0.57 -2.38 16 21 C -0.10 -1.24 9.70 -39.58 -0.38 -1.63 16 22 C -0.14 -1.65 10.05 -39.59 -0.40 -2.05 16 23 C -0.11 -1.46 10.05 -39.58 -0.40 -1.86 16 24 C -0.12 -1.89 10.05 -39.58 -0.40 -2.28 16 25 C -0.06 -1.03 8.80 -39.59 -0.35 -1.38 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.55 7.06 -51.93 -0.37 0.18 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.28 6.68 8.27 -40.82 -0.34 6.35 16 30 H 0.12 1.56 7.78 -51.93 -0.40 1.16 16 31 H 0.10 0.91 6.98 -51.93 -0.36 0.55 16 32 H 0.12 1.05 7.87 -52.48 -0.41 0.64 16 33 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 36 H 0.16 2.99 6.10 -52.48 -0.32 2.67 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -31.41 338.14 -10.76 -42.17 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.52 Total: 0.92 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -4.53 Total: -17.41 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.51 Total: -36.68 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -1.20 Total: -9.32 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.04 Total: 14.46 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.07 Total: 0.76 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.41 -10.76 -42.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002033248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.974 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds