Wall clock time and date at job start Fri Apr 10 2020 14:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29028 * 124.91855 * 2 1 4 4 C 1.31771 * 117.12878 * 180.02562 * 3 2 1 5 5 C 1.33644 * 114.50041 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.03938 * 180.02562 * 5 4 3 7 7 N 1.46504 * 109.47157 * 90.00053 * 6 5 4 8 8 C 1.46496 * 120.00034 * 275.00607 * 7 6 5 9 9 S 1.65597 * 119.99642 * 94.99724 * 7 6 5 10 10 O 1.42100 * 106.40274 * 203.53952 * 9 7 6 11 11 O 1.42104 * 106.40639 * 336.46706 * 9 7 6 12 12 N 1.65605 * 107.21452 * 90.00608 * 9 7 6 13 13 C 1.46499 * 120.00346 * 90.00009 * 12 9 7 14 14 C 1.46501 * 119.99798 * 269.99720 * 12 9 7 15 15 C 1.50697 * 109.47171 * 95.00018 * 14 12 9 16 16 H 1.08003 * 119.99974 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99943 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00468 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99803 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46903 * 60.00367 * 19 17 15 21 21 H 1.48496 * 109.47010 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47381 * 300.00273 * 19 17 15 23 23 S 1.70979 * 124.91569 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47106 * 269.99927 * 1 2 3 25 25 H 1.08995 * 109.46993 * 30.00161 * 1 2 3 26 26 H 1.08999 * 109.46860 * 149.99764 * 1 2 3 27 27 H 1.08002 * 122.75353 * 180.27327 * 4 3 2 28 28 H 1.08996 * 109.47247 * 210.00530 * 6 5 4 29 29 H 1.09005 * 109.47214 * 330.00706 * 6 5 4 30 30 H 1.08992 * 109.47577 * 89.99802 * 8 7 6 31 31 H 1.09004 * 109.46735 * 209.99490 * 8 7 6 32 32 H 1.08999 * 109.47251 * 329.99043 * 8 7 6 33 33 H 1.09001 * 109.47258 * 89.99606 * 13 12 9 34 34 H 1.08997 * 109.47230 * 210.00036 * 13 12 9 35 35 H 1.08999 * 109.46510 * 329.99773 * 13 12 9 36 36 H 1.09004 * 109.47203 * 215.00409 * 14 12 9 37 37 H 1.09000 * 109.47366 * 335.00392 * 14 12 9 38 38 H 0.96996 * 120.00478 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0004 6 6 5.3575 -0.8994 -0.0004 7 7 5.8183 -1.0610 1.3808 8 6 6.3685 0.0854 2.1083 9 16 5.7170 -2.5395 2.1198 10 8 5.6922 -2.2883 3.5182 11 8 4.6962 -3.2583 1.4411 12 7 7.1346 -3.3387 1.8134 13 6 8.2672 -3.2000 2.7322 14 6 7.2561 -4.1847 0.6235 15 6 7.8803 -3.3912 -0.4953 16 1 8.1591 -2.3600 -0.3359 17 6 8.0955 -3.9817 -1.7226 18 7 7.7566 -5.2374 -1.9167 19 14 8.8686 -2.9978 -3.1097 20 1 10.2162 -2.5316 -2.6946 21 1 8.9919 -3.8553 -4.3157 22 1 8.0132 -1.8247 -3.4211 23 16 2.4856 -1.4020 -0.0006 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 4.2532 1.7001 0.0038 28 1 5.4058 -1.8594 -0.5143 29 1 5.9950 -0.1798 -0.5142 30 1 5.5646 0.6046 2.6299 31 1 7.1054 -0.2632 2.8319 32 1 6.8451 0.7676 1.4044 33 1 8.2097 -3.9724 3.4991 34 1 9.1998 -3.3068 2.1781 35 1 8.2348 -2.2174 3.2029 36 1 7.8839 -5.0458 0.8525 37 1 6.2672 -4.5269 0.3184 38 1 7.9077 -5.6527 -2.7801 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056106769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:32 Heat of formation + Delta-G solvation = -25.758216 kcal Electronic energy + Delta-G solvation = -23617.170094 eV Core-core repulsion = 20134.812225 eV Total energy + Delta-G solvation = -3482.357869 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.54346 -36.76953 -36.22776 -35.53116 -35.25362 -32.55325 -32.22629 -29.53919 -27.86048 -26.53561 -25.14415 -24.28190 -23.17152 -22.29747 -19.49773 -18.33954 -17.89850 -17.19535 -16.89706 -16.38364 -15.91119 -15.22053 -14.94769 -14.67261 -14.21392 -14.07285 -13.56831 -13.45860 -13.33329 -12.92643 -12.72879 -12.57547 -12.41222 -12.29828 -12.17705 -11.94697 -11.73800 -11.51148 -11.25279 -11.22279 -11.17903 -10.83742 -10.77208 -10.55851 -10.16729 -9.85996 -9.48124 -9.10134 -8.90388 -8.64015 -8.55896 -8.09498 -6.17623 -4.25403 0.77436 1.22360 1.54508 2.01182 2.92396 3.20517 3.27117 3.27675 3.45218 4.06843 4.25607 4.30002 4.86854 4.96796 5.07135 5.11121 5.16496 5.36031 5.37522 5.42221 5.52585 5.66578 5.76780 5.77297 5.87845 5.95821 6.02382 6.16732 6.26951 6.32826 6.48349 6.76176 7.27794 7.36739 7.56437 7.78833 7.85255 8.07958 8.79746 9.41203 10.90082 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.005697 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.433588 B = 4913.760449 C = 5929.135446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.014 3.986 3 N -0.482 5.482 4 C 0.042 3.958 5 C -0.240 4.240 6 C 0.204 3.796 7 N -1.003 6.003 8 C 0.099 3.901 9 S 2.781 3.219 10 O -0.996 6.996 11 O -0.969 6.969 12 N -0.996 5.996 13 C 0.106 3.894 14 C 0.243 3.757 15 C -0.544 4.544 16 H 0.062 0.938 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 S 0.180 5.820 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.172 0.828 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.038 0.962 37 H 0.052 0.948 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.723 9.590 4.360 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.262 4.262 3 N -0.198 5.198 4 C -0.111 4.111 5 C -0.364 4.364 6 C 0.076 3.924 7 N -0.840 5.840 8 C -0.047 4.047 9 S 2.789 3.211 10 O -0.980 6.980 11 O -0.953 6.953 12 N -0.838 5.838 13 C -0.041 4.041 14 C 0.121 3.879 15 C -0.583 4.583 16 H 0.081 0.919 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.200 1.200 23 S 0.435 5.565 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.189 0.811 28 H 0.130 0.870 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.924 8.530 4.736 12.569 hybrid contribution 1.622 1.440 -1.091 2.428 sum -6.302 9.970 3.645 12.345 Atomic orbital electron populations 1.20379 0.85628 1.03875 1.03581 1.27164 1.01949 0.92709 1.04417 1.66281 1.04840 1.32104 1.16532 1.21616 0.91067 0.95622 1.02829 1.26672 1.01286 0.96649 1.11745 1.19565 0.86114 1.04179 0.82578 1.58048 1.76489 1.26378 1.23048 1.21379 0.98065 0.89070 0.96161 1.02021 0.73903 0.72448 0.72683 1.93537 1.87466 1.85707 1.31322 1.93575 1.55438 1.70751 1.75550 1.57687 1.29415 1.61236 1.35503 1.21242 0.90836 0.99762 0.92260 1.19243 0.99152 0.89776 0.79717 1.21514 1.42079 0.98631 0.96124 0.91941 1.24951 0.95355 0.94889 0.98527 1.69915 1.46638 1.11530 1.24411 0.86663 0.79892 0.80031 0.81465 1.20204 1.21142 1.20002 1.84728 0.96407 1.09548 1.65793 0.89920 0.89680 0.90216 0.81141 0.87004 0.88436 0.93120 0.91434 0.91160 0.93692 0.90698 0.93031 0.94405 0.93005 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.46 36.01 0.38 -0.35 16 2 C 0.01 0.20 7.39 -13.46 -0.10 0.10 16 3 N -0.48 -7.32 10.54 -11.86 -0.13 -7.45 16 4 C 0.04 0.60 11.25 -19.19 -0.22 0.39 16 5 C -0.24 -3.78 6.18 -35.92 -0.22 -4.00 16 6 C 0.20 3.31 5.90 -5.19 -0.03 3.28 16 7 N -1.00 -16.55 3.23 -123.05 -0.40 -16.95 16 8 C 0.10 1.29 10.33 59.84 0.62 1.91 16 9 S 2.78 54.83 5.98 -107.50 -0.64 54.18 16 10 O -1.00 -20.54 16.28 -57.17 -0.93 -21.48 16 11 O -0.97 -21.26 15.18 -57.17 -0.87 -22.13 16 12 N -1.00 -20.19 3.23 -123.05 -0.40 -20.58 16 13 C 0.11 1.79 10.31 59.85 0.62 2.40 16 14 C 0.24 5.83 5.41 -5.19 -0.03 5.80 16 15 C -0.54 -13.54 9.38 -34.44 -0.32 -13.86 16 16 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 17 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -24.50 13.29 55.43 0.74 -23.76 16 19 Si 0.89 19.87 29.54 -169.99 -5.02 14.85 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 23 S 0.18 2.83 22.70 -107.50 -2.44 0.39 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.17 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.11 2.10 7.61 -51.93 -0.40 1.71 16 29 H 0.10 1.34 7.96 -51.93 -0.41 0.93 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.85 7.37 -51.93 -0.38 0.46 16 32 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 35 H 0.05 0.76 7.37 -51.93 -0.38 0.37 16 36 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 37 H 0.05 1.36 6.91 -51.93 -0.36 1.00 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 349.57 15.07 5.27 5.27 Total: -1.00 -31.32 349.57 -9.49 -40.80 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.27 Total: -0.45 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 0.60 Total: -2.70 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -0.18 Total: -68.74 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -1.80 Total: -43.61 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 57.66 SS G_CDS: -3.08 Total: 54.58 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.32 -9.49 -40.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056106769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.046 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds