Wall clock time and date at job start Fri Apr 10 2020 14:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29028 * 124.91855 * 2 1 4 4 C 1.31771 * 117.12878 * 180.02562 * 3 2 1 5 5 C 1.33644 * 114.50041 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.03938 * 180.02562 * 5 4 3 7 7 N 1.46504 * 109.47157 * 90.00053 * 6 5 4 8 8 C 1.46496 * 120.00034 * 275.00607 * 7 6 5 9 9 S 1.65597 * 119.99642 * 94.99724 * 7 6 5 10 10 O 1.42100 * 106.40274 * 203.53952 * 9 7 6 11 11 O 1.42104 * 106.40639 * 336.46706 * 9 7 6 12 12 N 1.65605 * 107.21452 * 90.00608 * 9 7 6 13 13 C 1.46499 * 120.00346 * 90.00009 * 12 9 7 14 14 C 1.46501 * 119.99798 * 269.99720 * 12 9 7 15 15 C 1.50697 * 109.47171 * 95.00018 * 14 12 9 16 16 H 1.08003 * 119.99974 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99943 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00468 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99803 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46903 * 60.00367 * 19 17 15 21 21 H 1.48496 * 109.47010 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47381 * 300.00273 * 19 17 15 23 23 S 1.70979 * 124.91569 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47106 * 269.99927 * 1 2 3 25 25 H 1.08995 * 109.46993 * 30.00161 * 1 2 3 26 26 H 1.08999 * 109.46860 * 149.99764 * 1 2 3 27 27 H 1.08002 * 122.75353 * 180.27327 * 4 3 2 28 28 H 1.08996 * 109.47247 * 210.00530 * 6 5 4 29 29 H 1.09005 * 109.47214 * 330.00706 * 6 5 4 30 30 H 1.08992 * 109.47577 * 89.99802 * 8 7 6 31 31 H 1.09004 * 109.46735 * 209.99490 * 8 7 6 32 32 H 1.08999 * 109.47251 * 329.99043 * 8 7 6 33 33 H 1.09001 * 109.47258 * 89.99606 * 13 12 9 34 34 H 1.08997 * 109.47230 * 210.00036 * 13 12 9 35 35 H 1.08999 * 109.46510 * 329.99773 * 13 12 9 36 36 H 1.09004 * 109.47203 * 215.00409 * 14 12 9 37 37 H 1.09000 * 109.47366 * 335.00392 * 14 12 9 38 38 H 0.96996 * 120.00478 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0004 6 6 5.3575 -0.8994 -0.0004 7 7 5.8183 -1.0610 1.3808 8 6 6.3685 0.0854 2.1083 9 16 5.7170 -2.5395 2.1198 10 8 5.6922 -2.2883 3.5182 11 8 4.6962 -3.2583 1.4411 12 7 7.1346 -3.3387 1.8134 13 6 8.2672 -3.2000 2.7322 14 6 7.2561 -4.1847 0.6235 15 6 7.8803 -3.3912 -0.4953 16 1 8.1591 -2.3600 -0.3359 17 6 8.0955 -3.9817 -1.7226 18 7 7.7566 -5.2374 -1.9167 19 14 8.8686 -2.9978 -3.1097 20 1 10.2162 -2.5316 -2.6946 21 1 8.9919 -3.8553 -4.3157 22 1 8.0132 -1.8247 -3.4211 23 16 2.4856 -1.4020 -0.0006 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 4.2532 1.7001 0.0038 28 1 5.4058 -1.8594 -0.5143 29 1 5.9950 -0.1798 -0.5142 30 1 5.5646 0.6046 2.6299 31 1 7.1054 -0.2632 2.8319 32 1 6.8451 0.7676 1.4044 33 1 8.2097 -3.9724 3.4991 34 1 9.1998 -3.3068 2.1781 35 1 8.2348 -2.2174 3.2029 36 1 7.8839 -5.0458 0.8525 37 1 6.2672 -4.5269 0.3184 38 1 7.9077 -5.6527 -2.7801 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056106769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:32 Heat of formation + Delta-G solvation = -47.740134 kcal Electronic energy + Delta-G solvation = -23618.123301 eV Core-core repulsion = 20134.812225 eV Total energy + Delta-G solvation = -3483.311076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.66606 -38.38376 -37.48064 -37.19995 -36.88175 -34.46886 -33.25610 -30.59498 -29.64982 -27.63996 -26.77135 -25.42937 -24.37615 -24.08760 -20.66511 -19.79887 -19.08556 -18.74447 -18.49136 -18.15420 -17.38703 -16.63501 -16.30670 -15.98982 -15.56842 -15.17238 -15.09865 -14.93238 -14.51646 -14.15734 -14.04674 -13.95309 -13.81964 -13.44690 -13.39276 -13.34562 -13.00797 -12.99068 -12.92653 -12.90356 -12.62435 -12.42046 -12.35579 -11.99582 -11.90588 -11.72244 -10.63900 -10.55471 -10.30855 -10.15381 -9.82852 -9.69346 -8.14850 -6.29163 -0.48089 -0.18225 0.40534 0.87889 1.46683 1.47253 1.54834 1.77068 2.02785 2.44201 2.55736 3.17049 3.27121 3.36395 3.74103 3.90992 4.08663 4.15995 4.28392 4.58678 4.63796 4.65249 4.66550 4.68403 4.73855 4.79740 4.95383 5.00665 5.03281 5.04410 5.27703 5.29044 5.43618 5.56960 5.76251 5.93619 6.11297 6.72175 6.83067 7.41482 8.93099 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.005697 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.433588 B = 4913.760449 C = 5929.135446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.036 3.964 3 N -0.500 5.500 4 C 0.053 3.947 5 C -0.257 4.257 6 C 0.207 3.793 7 N -0.999 5.999 8 C 0.089 3.911 9 S 2.789 3.211 10 O -1.007 7.007 11 O -0.999 6.999 12 N -1.003 6.003 13 C 0.097 3.903 14 C 0.258 3.742 15 C -0.540 4.540 16 H 0.076 0.924 17 C 0.014 3.986 18 N -0.929 5.929 19 Si 0.955 3.045 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.261 1.261 23 S 0.120 5.880 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.200 0.800 28 H 0.078 0.922 29 H 0.127 0.873 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.017 0.983 37 H 0.021 0.979 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 12.555 4.304 14.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.242 4.242 3 N -0.216 5.216 4 C -0.099 4.099 5 C -0.380 4.380 6 C 0.079 3.921 7 N -0.838 5.838 8 C -0.056 4.056 9 S 2.798 3.202 10 O -0.991 6.991 11 O -0.983 6.983 12 N -0.845 5.845 13 C -0.049 4.049 14 C 0.134 3.866 15 C -0.579 4.579 16 H 0.094 0.906 17 C -0.186 4.186 18 N -0.568 5.568 19 Si 0.780 3.220 20 H -0.192 1.192 21 H -0.218 1.218 22 H -0.185 1.185 23 S 0.374 5.626 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.217 0.783 28 H 0.096 0.904 29 H 0.144 0.856 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.035 0.965 37 H 0.039 0.961 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.644 11.515 4.718 14.604 hybrid contribution 1.456 0.575 -1.001 1.858 sum -6.188 12.090 3.717 14.081 Atomic orbital electron populations 1.20620 0.82713 1.05366 1.05048 1.27846 1.03419 0.91148 1.01742 1.66395 1.05249 1.32182 1.17773 1.22039 0.91360 0.95783 1.00739 1.26556 1.00533 0.96854 1.14056 1.19530 0.87239 1.03222 0.82130 1.57795 1.76627 1.26061 1.23347 1.21698 0.98614 0.88310 0.96930 1.01592 0.73332 0.72950 0.72345 1.93514 1.87507 1.86039 1.32005 1.93536 1.56665 1.72118 1.75981 1.57617 1.30615 1.61357 1.34868 1.21482 0.89774 1.01649 0.91983 1.18796 0.96845 0.89784 0.81151 1.21781 1.40947 0.99052 0.96148 0.90627 1.25791 0.95947 0.95705 1.01147 1.70058 1.48400 1.13405 1.24957 0.85646 0.79451 0.78789 0.78092 1.19167 1.21755 1.18549 1.84964 0.98376 1.11962 1.67251 0.88292 0.88263 0.88580 0.78308 0.90370 0.85553 0.92373 0.90929 0.87976 0.92821 0.90490 0.90419 0.96467 0.96140 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.46 71.24 0.75 -0.58 16 2 C 0.04 0.94 7.39 88.52 0.65 1.59 16 3 N -0.50 -14.11 10.54 -191.44 -2.02 -16.13 16 4 C 0.05 1.42 11.25 83.66 0.94 2.36 16 5 C -0.26 -7.82 6.18 24.64 0.15 -7.67 16 6 C 0.21 6.47 5.90 85.63 0.50 6.98 16 7 N -1.00 -31.52 3.23 -543.23 -1.75 -33.27 16 8 C 0.09 2.05 10.33 127.77 1.32 3.37 16 9 S 2.79 109.94 5.98 -56.49 -0.34 109.61 16 10 O -1.01 -40.80 16.28 -128.00 -2.08 -42.88 16 11 O -1.00 -45.44 15.18 -128.00 -1.94 -47.38 16 12 N -1.00 -40.76 3.23 -543.23 -1.75 -42.51 16 13 C 0.10 3.16 10.31 127.77 1.32 4.48 16 14 C 0.26 12.74 5.41 85.63 0.46 13.20 16 15 C -0.54 -26.89 9.38 25.60 0.24 -26.65 16 16 H 0.08 3.49 7.81 -2.91 -0.02 3.47 16 17 C 0.01 0.72 5.46 84.66 0.46 1.18 16 18 N -0.93 -52.58 13.29 21.45 0.28 -52.29 16 19 Si 0.96 40.22 29.54 68.60 2.03 42.25 16 20 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 21 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 23 S 0.12 3.78 22.70 -56.49 -1.28 2.50 16 24 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.20 3.96 8.06 -2.91 -0.02 3.94 16 28 H 0.08 3.00 7.61 -2.39 -0.02 2.98 16 29 H 0.13 3.14 7.96 -2.38 -0.02 3.12 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.60 7.37 -2.38 -0.02 1.58 16 32 H 0.10 1.71 7.94 -2.39 -0.02 1.69 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 2.47 8.07 -2.39 -0.02 2.45 16 35 H 0.08 2.11 7.37 -2.39 -0.02 2.10 16 36 H 0.02 0.91 8.11 -2.38 -0.02 0.89 16 37 H 0.02 1.14 6.91 -2.39 -0.02 1.12 16 38 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -68.40 349.57 -1.00 -69.40 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 1.06 Total: 12.46 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 6.80 Total: -1.75 kcal Atomic # 7 Polarization: -138.96 SS G_CDS: -5.24 Total: -144.20 kcal Atomic # 8 Polarization: -86.24 SS G_CDS: -4.03 Total: -90.27 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Atomic # 16 Polarization: 113.73 SS G_CDS: -1.62 Total: 112.11 kcal Total: -68.40 -1.00 -69.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056106769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.660 kcal (2) G-P(sol) polarization free energy of solvation -68.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds