Wall clock time and date at job start Fri Apr 10 2020 14:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47377 * 72.28435 * 3 2 1 5 5 C 1.36930 * 120.00139 * 263.91670 * 4 3 2 6 6 H 1.07998 * 120.00236 * 199.38208 * 5 4 3 7 7 C 1.38819 * 120.00013 * 19.38282 * 5 4 3 8 8 N 1.31618 * 119.99794 * 22.28477 * 7 5 4 9 9 Si 1.86799 * 119.99831 * 202.28572 * 7 5 4 10 10 H 1.48494 * 109.47394 * 59.99807 * 9 7 5 11 11 H 1.48501 * 109.46682 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47106 * 299.99618 * 9 7 5 13 13 C 1.46501 * 119.99704 * 83.91248 * 4 3 2 14 14 C 1.50701 * 109.47013 * 90.00504 * 13 4 3 15 15 N 1.28502 * 118.13425 * 359.97438 * 14 13 4 16 16 C 1.36182 * 127.56260 * 182.66680 * 15 14 13 17 17 C 1.39766 * 120.49846 * 193.28256 * 16 15 14 18 18 C 1.37891 * 119.90752 * 178.93230 * 17 16 15 19 19 C 1.38367 * 120.65845 * 359.97438 * 18 17 16 20 20 C 1.38651 * 119.98144 * 0.25468 * 19 18 17 21 21 C 1.37097 * 119.62489 * 359.94465 * 20 19 18 22 22 S 1.76945 * 121.47832 * 179.22231 * 21 20 19 23 23 O 1.42101 * 106.98943 * 270.21870 * 22 21 20 24 24 O 1.42102 * 106.99307 * 44.72894 * 22 21 20 25 25 N 1.37407 * 118.13189 * 180.02562 * 14 13 4 26 26 H 4.40649 * 5.51454 * 180.02562 * 4 1 2 27 27 H 1.08992 * 109.47479 * 312.28645 * 3 2 1 28 28 H 1.09005 * 109.47368 * 192.28096 * 3 2 1 29 29 H 0.97001 * 119.99811 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47541 * 330.00203 * 13 4 3 31 31 H 1.09003 * 109.46977 * 210.00380 * 13 4 3 32 32 H 1.07998 * 120.04586 * 358.90523 * 17 16 15 33 33 H 1.07995 * 119.67379 * 180.02562 * 18 17 16 34 34 H 1.07994 * 120.00979 * 180.25085 * 19 18 17 35 35 H 1.08006 * 120.18630 * 179.97438 * 20 19 18 36 36 H 0.97003 * 121.77922 * 329.94324 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.4194 -1.3158 5 6 3.4818 -1.7262 -1.5319 6 1 4.1203 -1.9848 -2.3637 7 6 3.0132 -2.7187 -0.6820 8 7 1.9286 -2.5131 0.0348 9 14 3.9220 -4.3458 -0.5555 10 1 5.3112 -4.1021 -0.0910 11 1 3.2235 -5.2289 0.4127 12 1 3.9533 -5.0002 -1.8882 13 6 3.2514 0.5586 -2.4002 14 6 4.6234 1.1813 -2.3693 15 7 5.4437 0.7952 -1.4586 16 6 6.7018 1.2603 -1.2232 17 6 7.5709 0.5604 -0.3816 18 6 8.8496 1.0306 -0.1691 19 6 9.2851 2.1921 -0.7822 20 6 8.4309 2.8980 -1.6156 21 6 7.1571 2.4375 -1.8274 22 16 6.0199 3.3100 -2.8649 23 8 5.3214 4.2282 -2.0353 24 8 6.7311 3.6869 -4.0359 25 7 4.9256 2.1305 -3.3158 26 1 -1.0500 0.0001 -0.0002 27 1 3.0096 -0.6906 0.7602 28 1 3.0089 1.0050 0.2186 29 1 1.6014 -3.2065 0.6290 30 1 2.4971 1.3349 -2.2723 31 1 3.1004 0.0596 -3.3574 32 1 7.2412 -0.3473 0.1020 33 1 9.5181 0.4866 0.4816 34 1 10.2901 2.5487 -0.6116 35 1 8.7673 3.8052 -2.0955 36 1 4.5250 2.1167 -4.1991 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491307508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:39 Heat of formation + Delta-G solvation = 79.259371 kcal Electronic energy + Delta-G solvation = -24477.468013 eV Core-core repulsion = 20864.220098 eV Total energy + Delta-G solvation = -3613.247916 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.078 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -39.88893 -38.05345 -37.27536 -36.03823 -35.78324 -33.35510 -31.62874 -31.53051 -31.29465 -29.38063 -27.20274 -25.97138 -23.80785 -23.04919 -21.92244 -20.33510 -19.29120 -18.78757 -17.81315 -17.52102 -16.84010 -16.35446 -15.86322 -15.34690 -15.12214 -14.99849 -14.36298 -14.15103 -13.92366 -13.48601 -13.46619 -12.84286 -12.70842 -12.59367 -12.27872 -12.19225 -11.97807 -11.80706 -11.49825 -11.40581 -11.06937 -10.79374 -10.70457 -10.44817 -10.34482 -10.08404 -9.44899 -9.40907 -9.00741 -8.83578 -8.50517 -8.00347 -7.14184 -5.87568 -3.26466 0.09261 0.54409 1.10304 2.47311 2.61888 3.26748 3.34171 3.41704 3.43097 3.75023 4.04252 4.13653 4.34556 4.47149 4.54781 4.65943 4.84315 5.00840 5.12925 5.21451 5.38701 5.46897 5.52433 5.68528 5.81023 5.93538 5.96643 6.07123 6.16117 6.23027 6.37744 6.69291 6.73426 6.82641 7.18672 7.36941 7.69036 8.14388 8.40577 8.99483 9.14056 9.64169 10.09080 11.15436 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.005113 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.295343 B = 5475.199079 C = 6594.942628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.100 4.100 3 C 0.270 3.730 4 N -0.547 5.547 5 C -0.257 4.257 6 H 0.073 0.927 7 C 0.010 3.990 8 N -0.880 5.880 9 Si 0.900 3.100 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.284 1.284 13 C 0.181 3.819 14 C 0.419 3.581 15 N -0.519 5.519 16 C 0.219 3.781 17 C -0.113 4.113 18 C -0.058 4.058 19 C -0.158 4.158 20 C -0.007 4.007 21 C -0.718 4.718 22 S 2.661 3.339 23 O -0.941 6.941 24 O -0.952 6.952 25 N -1.059 6.059 26 H 0.191 0.809 27 H 0.096 0.904 28 H 0.040 0.960 29 H 0.257 0.743 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.030 8.777 -3.549 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.103 4.103 3 C 0.145 3.855 4 N -0.263 5.263 5 C -0.386 4.386 6 H 0.091 0.909 7 C -0.190 4.190 8 N -0.522 5.522 9 Si 0.729 3.271 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.210 1.210 13 C 0.046 3.954 14 C 0.146 3.854 15 N -0.237 5.237 16 C 0.113 3.887 17 C -0.133 4.133 18 C -0.077 4.077 19 C -0.178 4.178 20 C -0.027 4.027 21 C -0.810 4.810 22 S 2.754 3.246 23 O -0.930 6.930 24 O -0.941 6.941 25 N -0.816 5.816 26 H 0.208 0.792 27 H 0.114 0.886 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 9.031 9.059 -2.963 13.130 hybrid contribution 0.751 -1.042 -0.406 1.347 sum 9.781 8.017 -3.369 13.088 Atomic orbital electron populations 1.24185 0.95325 1.08019 1.03714 1.24174 0.95209 0.93874 0.97019 1.17688 0.82554 0.96747 0.88473 1.43602 1.72209 1.04745 1.05745 1.19019 1.24406 0.81648 1.13493 0.90889 1.24881 0.96010 0.97773 1.00333 1.70130 1.18977 1.33961 1.29106 0.86423 0.79769 0.83378 0.77517 1.20960 1.21764 1.21035 1.20110 0.86617 0.93602 0.95026 1.25516 0.96488 0.82337 0.81070 1.66873 1.03103 1.27922 1.25757 1.18202 0.89190 0.89703 0.91654 1.21163 0.92747 1.01038 0.98383 1.21293 0.95308 0.94811 0.96290 1.21230 1.00006 0.96691 0.99877 1.20298 0.90612 0.97662 0.94107 1.30819 1.13323 1.14627 1.22249 1.03235 0.73937 0.73106 0.74310 1.93685 1.72026 1.58616 1.68634 1.93620 1.72114 1.81249 1.47162 1.54605 1.59169 1.43500 1.24284 0.79207 0.88645 0.94202 0.93296 0.89550 0.89256 0.83869 0.85091 0.85228 0.85242 0.72699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.30 19.25 29.55 0.57 -5.73 16 2 C -0.10 -2.29 11.50 -37.13 -0.43 -2.72 16 3 C 0.27 6.04 5.41 -6.83 -0.04 6.01 16 4 N -0.55 -11.97 1.81 -177.95 -0.32 -12.29 16 5 C -0.26 -6.26 9.59 -15.06 -0.14 -6.40 16 6 H 0.07 1.76 7.92 -52.49 -0.42 1.35 16 7 C 0.01 0.26 4.82 -17.43 -0.08 0.18 16 8 N -0.88 -23.49 9.61 55.49 0.53 -22.95 16 9 Si 0.90 20.51 29.61 -169.99 -5.03 15.47 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.18 3.10 6.19 -5.19 -0.03 3.07 16 14 C 0.42 6.86 7.50 -154.84 -1.16 5.70 16 15 N -0.52 -9.55 8.93 -8.26 -0.07 -9.62 16 16 C 0.22 3.74 6.61 -84.73 -0.56 3.18 16 17 C -0.11 -1.73 10.00 -39.14 -0.39 -2.12 16 18 C -0.06 -0.71 10.00 -39.66 -0.40 -1.10 16 19 C -0.16 -1.84 10.07 -39.38 -0.40 -2.24 16 20 C -0.01 -0.09 9.74 -39.84 -0.39 -0.48 16 21 C -0.72 -11.14 5.91 -39.36 -0.23 -11.37 16 22 S 2.66 39.28 5.98 -107.50 -0.64 38.64 16 23 O -0.94 -16.37 18.06 -57.07 -1.03 -17.40 16 24 O -0.95 -14.89 17.99 -57.07 -1.03 -15.92 16 25 N -1.06 -13.87 6.02 32.77 0.20 -13.67 16 26 H 0.19 3.41 7.80 -54.09 -0.42 2.98 16 27 H 0.10 2.36 6.59 -51.93 -0.34 2.02 16 28 H 0.04 0.82 8.12 -51.93 -0.42 0.40 16 29 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.09 1.39 8.04 -51.93 -0.42 0.97 16 32 H 0.14 2.20 8.06 -52.49 -0.42 1.77 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.43 3.99 8.96 -37.47 -0.34 3.66 16 LS Contribution 331.96 15.07 5.00 5.00 Total: -1.00 -32.67 331.96 -9.68 -42.35 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.60 Total: 4.42 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -3.68 Total: -14.03 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.33 Total: -58.54 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -2.06 Total: -33.32 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.47 kcal Atomic # 16 Polarization: 39.28 SS G_CDS: -0.64 Total: 38.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.67 -9.68 -42.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491307508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.610 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds