Wall clock time and date at job start Fri Apr 10 2020 14:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47377 * 72.28435 * 3 2 1 5 5 C 1.36930 * 120.00139 * 263.91670 * 4 3 2 6 6 H 1.07998 * 120.00236 * 199.38208 * 5 4 3 7 7 C 1.38819 * 120.00013 * 19.38282 * 5 4 3 8 8 N 1.31618 * 119.99794 * 22.28477 * 7 5 4 9 9 Si 1.86799 * 119.99831 * 202.28572 * 7 5 4 10 10 H 1.48494 * 109.47394 * 59.99807 * 9 7 5 11 11 H 1.48501 * 109.46682 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47106 * 299.99618 * 9 7 5 13 13 C 1.46501 * 119.99704 * 83.91248 * 4 3 2 14 14 C 1.50701 * 109.47013 * 90.00504 * 13 4 3 15 15 N 1.28502 * 118.13425 * 359.97438 * 14 13 4 16 16 C 1.36182 * 127.56260 * 182.66680 * 15 14 13 17 17 C 1.39766 * 120.49846 * 193.28256 * 16 15 14 18 18 C 1.37891 * 119.90752 * 178.93230 * 17 16 15 19 19 C 1.38367 * 120.65845 * 359.97438 * 18 17 16 20 20 C 1.38651 * 119.98144 * 0.25468 * 19 18 17 21 21 C 1.37097 * 119.62489 * 359.94465 * 20 19 18 22 22 S 1.76945 * 121.47832 * 179.22231 * 21 20 19 23 23 O 1.42101 * 106.98943 * 270.21870 * 22 21 20 24 24 O 1.42102 * 106.99307 * 44.72894 * 22 21 20 25 25 N 1.37407 * 118.13189 * 180.02562 * 14 13 4 26 26 H 4.40649 * 5.51454 * 180.02562 * 4 1 2 27 27 H 1.08992 * 109.47479 * 312.28645 * 3 2 1 28 28 H 1.09005 * 109.47368 * 192.28096 * 3 2 1 29 29 H 0.97001 * 119.99811 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47541 * 330.00203 * 13 4 3 31 31 H 1.09003 * 109.46977 * 210.00380 * 13 4 3 32 32 H 1.07998 * 120.04586 * 358.90523 * 17 16 15 33 33 H 1.07995 * 119.67379 * 180.02562 * 18 17 16 34 34 H 1.07994 * 120.00979 * 180.25085 * 19 18 17 35 35 H 1.08006 * 120.18630 * 179.97438 * 20 19 18 36 36 H 0.97003 * 121.77922 * 329.94324 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1345 -0.4194 -1.3158 5 6 3.4818 -1.7262 -1.5319 6 1 4.1203 -1.9848 -2.3637 7 6 3.0132 -2.7187 -0.6820 8 7 1.9286 -2.5131 0.0348 9 14 3.9220 -4.3458 -0.5555 10 1 5.3112 -4.1021 -0.0910 11 1 3.2235 -5.2289 0.4127 12 1 3.9533 -5.0002 -1.8882 13 6 3.2514 0.5586 -2.4002 14 6 4.6234 1.1813 -2.3693 15 7 5.4437 0.7952 -1.4586 16 6 6.7018 1.2603 -1.2232 17 6 7.5709 0.5604 -0.3816 18 6 8.8496 1.0306 -0.1691 19 6 9.2851 2.1921 -0.7822 20 6 8.4309 2.8980 -1.6156 21 6 7.1571 2.4375 -1.8274 22 16 6.0199 3.3100 -2.8649 23 8 5.3214 4.2282 -2.0353 24 8 6.7311 3.6869 -4.0359 25 7 4.9256 2.1305 -3.3158 26 1 -1.0500 0.0001 -0.0002 27 1 3.0096 -0.6906 0.7602 28 1 3.0089 1.0050 0.2186 29 1 1.6014 -3.2065 0.6290 30 1 2.4971 1.3349 -2.2723 31 1 3.1004 0.0596 -3.3574 32 1 7.2412 -0.3473 0.1020 33 1 9.5181 0.4866 0.4816 34 1 10.2901 2.5487 -0.6116 35 1 8.7673 3.8052 -2.0955 36 1 4.5250 2.1167 -4.1991 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491307508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:37 Heat of formation + Delta-G solvation = 57.644908 kcal Electronic energy + Delta-G solvation = -24478.405287 eV Core-core repulsion = 20864.220098 eV Total energy + Delta-G solvation = -3614.185189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.078 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.06400 -39.25064 -38.55095 -37.43293 -37.26989 -34.51810 -33.43432 -33.14240 -32.35675 -30.66105 -28.65473 -27.75702 -25.01472 -24.34103 -23.31945 -21.65629 -20.43253 -19.96365 -19.27563 -19.02990 -18.04495 -17.97387 -17.09545 -16.80166 -16.41848 -16.22360 -15.74980 -15.58342 -15.29012 -14.98042 -14.88233 -14.31977 -14.01858 -13.67229 -13.55723 -13.47554 -13.41584 -13.14345 -13.10468 -12.80418 -12.68145 -12.46761 -12.18242 -11.93538 -11.86438 -11.58380 -10.73539 -10.70089 -10.63061 -10.49125 -10.27199 -9.16231 -8.91757 -7.76528 -5.16385 -1.07401 -0.59386 0.02533 1.28908 1.47325 1.50915 1.55262 1.59725 2.10181 2.36641 2.59328 2.62740 2.66121 2.89284 3.31715 3.42047 3.55648 3.72325 3.93949 4.06613 4.12848 4.19827 4.23341 4.41192 4.58216 4.62159 4.78317 4.94016 5.02194 5.02716 5.16662 5.34836 5.36687 5.70981 5.73804 5.76794 5.81014 6.33443 7.10573 7.19162 7.42561 7.86065 8.28850 9.25054 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.005113 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.295343 B = 5475.199079 C = 6594.942628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.136 4.136 3 C 0.280 3.720 4 N -0.563 5.563 5 C -0.246 4.246 6 H 0.072 0.928 7 C -0.038 4.038 8 N -0.908 5.908 9 Si 0.949 3.051 10 H -0.286 1.286 11 H -0.302 1.302 12 H -0.281 1.281 13 C 0.179 3.821 14 C 0.419 3.581 15 N -0.548 5.548 16 C 0.185 3.815 17 C -0.134 4.134 18 C -0.050 4.050 19 C -0.144 4.144 20 C -0.019 4.019 21 C -0.731 4.731 22 S 2.689 3.311 23 O -0.968 6.968 24 O -0.957 6.957 25 N -1.045 6.045 26 H 0.222 0.778 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.245 0.755 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.131 0.869 33 H 0.167 0.833 34 H 0.173 0.827 35 H 0.156 0.844 36 H 0.451 0.549 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.019 10.080 -4.423 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.139 4.139 3 C 0.155 3.845 4 N -0.280 5.280 5 C -0.376 4.376 6 H 0.089 0.911 7 C -0.235 4.235 8 N -0.553 5.553 9 Si 0.779 3.221 10 H -0.213 1.213 11 H -0.228 1.228 12 H -0.207 1.207 13 C 0.047 3.953 14 C 0.146 3.854 15 N -0.266 5.266 16 C 0.079 3.921 17 C -0.155 4.155 18 C -0.068 4.068 19 C -0.163 4.163 20 C -0.039 4.039 21 C -0.824 4.824 22 S 2.782 3.218 23 O -0.957 6.957 24 O -0.947 6.947 25 N -0.805 5.805 26 H 0.239 0.761 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.149 0.851 33 H 0.184 0.816 34 H 0.191 0.809 35 H 0.173 0.827 36 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 11.034 10.378 -3.886 15.639 hybrid contribution 0.335 -1.287 -0.193 1.344 sum 11.369 9.091 -4.079 15.118 Atomic orbital electron populations 1.24972 0.96278 1.06664 1.02415 1.24513 0.95943 0.95117 0.98289 1.17436 0.82685 0.96223 0.88195 1.43594 1.73089 1.04754 1.06585 1.19169 1.22915 0.82832 1.12671 0.91068 1.25384 0.96875 1.00020 1.01223 1.70261 1.20447 1.34090 1.30456 0.85633 0.78478 0.80939 0.77038 1.21257 1.22835 1.20731 1.20319 0.87265 0.93282 0.94421 1.24765 0.96243 0.82872 0.81548 1.66761 1.04257 1.29068 1.26526 1.18389 0.89127 0.91097 0.93477 1.21323 0.94243 1.01096 0.98791 1.21723 0.94260 0.94978 0.95843 1.21770 1.01439 0.95478 0.97649 1.20833 0.89957 0.98739 0.94347 1.30842 1.14437 1.14273 1.22829 1.02128 0.73502 0.72480 0.73675 1.93657 1.72775 1.59948 1.69299 1.93613 1.72166 1.81500 1.47382 1.54173 1.59168 1.42397 1.24715 0.76142 0.91856 0.93164 0.94518 0.88034 0.87461 0.85131 0.81576 0.80940 0.82659 0.70602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.08 19.25 74.32 1.43 -10.65 16 2 C -0.14 -6.30 11.50 31.12 0.36 -5.94 16 3 C 0.28 12.89 5.41 84.57 0.46 13.35 16 4 N -0.56 -24.97 1.81 -716.90 -1.30 -26.27 16 5 C -0.25 -12.19 9.59 84.04 0.81 -11.38 16 6 H 0.07 3.47 7.92 -2.91 -0.02 3.45 16 7 C -0.04 -2.00 4.82 84.86 0.41 -1.59 16 8 N -0.91 -50.00 9.61 21.65 0.21 -49.79 16 9 Si 0.95 43.31 29.61 68.60 2.03 45.34 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 C 0.18 6.07 6.19 85.63 0.53 6.60 16 14 C 0.42 13.52 7.50 137.93 1.03 14.55 16 15 N -0.55 -20.26 8.93 -180.05 -1.61 -21.87 16 16 C 0.18 6.22 6.61 39.25 0.26 6.48 16 17 C -0.13 -4.02 10.00 22.56 0.23 -3.80 16 18 C -0.05 -1.06 10.00 22.22 0.22 -0.84 16 19 C -0.14 -2.75 10.07 22.40 0.23 -2.52 16 20 C -0.02 -0.45 9.74 22.10 0.22 -0.23 16 21 C -0.73 -21.56 5.91 22.41 0.13 -21.43 16 22 S 2.69 75.50 5.98 -56.49 -0.34 75.16 16 23 O -0.97 -32.71 18.06 -128.10 -2.31 -35.02 16 24 O -0.96 -27.94 17.99 -128.10 -2.30 -30.24 16 25 N -1.05 -26.07 6.02 -50.22 -0.30 -26.38 16 26 H 0.22 7.53 7.80 -4.42 -0.03 7.49 16 27 H 0.06 3.30 6.59 -2.39 -0.02 3.28 16 28 H 0.05 2.13 8.12 -2.38 -0.02 2.11 16 29 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 30 H 0.10 3.09 8.07 -2.39 -0.02 3.07 16 31 H 0.11 3.21 8.04 -2.39 -0.02 3.19 16 32 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 33 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.45 7.54 8.96 -94.84 -0.85 6.69 16 Total: -1.00 -71.62 331.96 0.66 -70.96 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.28 Total: 15.50 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 6.31 Total: -17.40 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -3.00 Total: -124.30 kcal Atomic # 8 Polarization: -60.64 SS G_CDS: -4.62 Total: -65.26 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 75.50 SS G_CDS: -0.34 Total: 75.16 kcal Total: -71.62 0.66 -70.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491307508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.609 kcal (2) G-P(sol) polarization free energy of solvation -71.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds