Wall clock time and date at job start Fri Apr 10 2020 14:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40065 * 125.94892 * 2 1 4 4 C 1.31901 * 108.22968 * 179.97438 * 3 2 1 5 5 C 1.47593 * 125.99167 * 179.97438 * 4 3 2 6 6 O 1.21489 * 120.00015 * 180.02562 * 5 4 3 7 7 O 1.34728 * 119.99951 * 0.02562 * 5 4 3 8 8 C 1.45192 * 117.00143 * 180.02562 * 7 5 4 9 9 C 1.50709 * 109.47166 * 179.97438 * 8 7 5 10 10 O 1.21293 * 119.99764 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99685 * 179.97438 * 9 8 7 12 12 C 1.37096 * 119.99486 * 179.97438 * 11 9 8 13 13 H 1.07999 * 120.00587 * 0.02562 * 12 11 9 14 14 C 1.38954 * 120.00169 * 180.02562 * 12 11 9 15 15 N 1.31410 * 119.99576 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00308 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47144 * 89.99879 * 16 14 12 18 18 H 1.48500 * 109.46927 * 209.99989 * 16 14 12 19 19 H 1.48498 * 109.46819 * 329.99721 * 16 14 12 20 20 C 1.41106 * 108.02237 * 359.97438 * 4 3 2 21 21 C 1.35575 * 107.80024 * 359.97438 * 20 4 3 22 22 O 1.35768 * 126.07933 * 179.97438 * 21 20 4 23 23 C 1.42898 * 117.00332 * 2.61302 * 22 21 20 24 24 F 1.39903 * 109.46930 * 298.81123 * 23 22 21 25 25 F 1.39897 * 109.46950 * 58.80643 * 23 22 21 26 26 H 1.08995 * 109.47084 * 85.20753 * 1 2 3 27 27 H 1.09003 * 109.47025 * 205.20805 * 1 2 3 28 28 H 1.08998 * 109.47390 * 325.20562 * 1 2 3 29 29 H 1.08998 * 109.47228 * 300.00060 * 8 7 5 30 30 H 1.08995 * 109.47466 * 60.00172 * 8 7 5 31 31 H 0.96993 * 120.00159 * 0.02562 * 11 9 8 32 32 H 0.97004 * 120.00429 * 180.02562 * 15 14 12 33 33 H 1.08003 * 126.10369 * 180.02562 * 20 4 3 34 34 H 1.08997 * 109.46991 * 178.81307 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2872 1.1339 0.0000 4 6 3.5436 0.7324 0.0006 5 6 4.7333 1.6060 0.0002 6 8 5.8456 1.1174 0.0003 7 8 4.5857 2.9452 -0.0002 8 6 5.7993 3.7421 -0.0011 9 6 5.4394 5.2056 -0.0021 10 8 4.2745 5.5435 -0.0026 11 7 6.4119 6.1387 -0.0025 12 6 6.0843 7.4699 -0.0040 13 1 5.0472 7.7710 -0.0044 14 6 7.0869 8.4321 -0.0049 15 7 8.3489 8.0659 -0.0050 16 14 6.6407 10.2460 -0.0062 17 1 6.5227 10.7277 1.3936 18 1 7.6997 11.0157 -0.7071 19 1 5.3449 10.4364 -0.7061 20 6 3.5511 -0.6786 0.0015 21 6 2.2625 -1.0999 0.0021 22 8 1.8435 -2.3913 0.0026 23 6 2.8530 -3.4009 0.0606 24 9 3.6812 -3.2972 -1.0622 25 9 3.6165 -3.2309 1.2204 26 1 -0.3633 0.0859 -1.0240 27 1 -0.3633 -0.9298 0.4377 28 1 -0.3634 0.8439 0.5864 29 1 6.3855 3.5124 0.8887 30 1 6.3847 3.5118 -0.8912 31 1 7.3434 5.8684 -0.0025 32 1 9.0489 8.7375 -0.0053 33 1 4.4271 -1.3104 0.0026 34 1 2.3830 -4.3842 0.0757 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767725354.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:15 Heat of formation + Delta-G solvation = -197.295862 kcal Electronic energy + Delta-G solvation = -25795.307007 eV Core-core repulsion = 21173.084356 eV Total energy + Delta-G solvation = -4622.222651 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.27508 -48.35342 -42.85268 -41.52066 -40.03825 -39.36630 -37.63845 -36.04456 -34.65479 -33.42605 -31.20928 -30.26233 -28.49654 -27.32289 -26.57905 -24.83660 -22.59481 -21.81978 -21.46257 -20.20907 -20.08665 -19.09072 -19.00779 -18.44494 -18.01047 -17.92376 -17.50054 -17.10772 -17.06431 -16.47586 -16.01592 -15.78400 -15.76427 -15.22183 -15.21583 -14.76088 -14.75763 -14.55700 -14.14969 -13.88829 -13.78411 -13.56432 -13.48226 -13.45554 -13.14488 -12.94181 -12.47988 -12.33570 -12.14712 -12.10126 -11.96115 -11.58505 -10.56941 -10.53407 -10.12256 -9.94550 -8.52468 -6.03130 -0.21207 0.38377 0.65920 1.05947 1.35892 1.43117 1.56432 1.76195 1.86530 1.87232 2.29135 2.51106 2.85102 3.12806 3.13157 3.40546 3.60700 3.66086 3.85994 4.01538 4.07292 4.13057 4.20708 4.34344 4.36282 4.64747 4.77880 4.89420 5.02806 5.36888 5.65098 5.87900 5.99409 6.39779 6.50777 7.02487 7.38848 7.92987 8.64664 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.030205 B = 0.002348 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.774942 B =11923.167782 C =12664.631118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.341 5.341 3 N -0.233 5.233 4 C 0.050 3.950 5 C 0.550 3.450 6 O -0.503 6.503 7 O -0.330 6.330 8 C 0.068 3.932 9 C 0.437 3.563 10 O -0.617 6.617 11 N -0.556 5.556 12 C -0.338 4.338 13 H 0.083 0.917 14 C -0.009 4.009 15 N -0.915 5.915 16 Si 0.999 3.001 17 H -0.269 1.269 18 H -0.268 1.268 19 H -0.271 1.271 20 C -0.273 4.273 21 C 0.276 3.724 22 O -0.303 6.303 23 C 0.419 3.581 24 F -0.206 7.206 25 F -0.206 7.206 26 H 0.100 0.900 27 H 0.126 0.874 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.401 0.599 32 H 0.281 0.719 33 H 0.170 0.830 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.013 -27.099 0.202 30.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.134 5.134 3 N -0.066 5.066 4 C -0.113 4.113 5 C 0.392 3.608 6 O -0.389 6.389 7 O -0.243 6.243 8 C -0.008 4.008 9 C 0.223 3.777 10 O -0.504 6.504 11 N -0.193 5.193 12 C -0.467 4.467 13 H 0.101 0.899 14 C -0.209 4.209 15 N -0.555 5.555 16 Si 0.822 3.178 17 H -0.194 1.194 18 H -0.193 1.193 19 H -0.196 1.196 20 C -0.303 4.303 21 C 0.107 3.893 22 O -0.215 6.215 23 C 0.330 3.670 24 F -0.188 7.188 25 F -0.188 7.188 26 H 0.119 0.881 27 H 0.145 0.855 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.236 0.764 32 H 0.091 0.909 33 H 0.188 0.812 34 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -14.265 -26.021 0.190 29.675 hybrid contribution 1.494 0.269 -0.004 1.518 sum -12.771 -25.751 0.186 28.745 Atomic orbital electron populations 1.22566 0.69633 1.07144 1.06054 1.49186 1.08723 0.99916 1.55619 1.78149 1.00856 1.05516 1.22059 1.20495 0.90644 0.92915 1.07219 1.19841 0.87365 0.80872 0.72698 1.90839 1.25695 1.76159 1.46254 1.86675 1.37106 1.17616 1.82949 1.22703 0.84538 0.87481 1.06114 1.20035 0.86032 0.87342 0.84264 1.90542 1.20458 1.82714 1.56676 1.41707 1.08236 1.05389 1.64008 1.19720 0.94636 0.81650 1.50721 0.89862 1.26137 0.94388 1.04797 0.95612 1.69672 0.99749 1.36961 1.49094 0.84846 0.78143 0.76025 0.78827 1.19393 1.19290 1.19612 1.21144 0.96636 0.92874 1.19678 1.18519 0.88622 0.82266 0.99926 1.86435 1.36907 1.09701 1.88503 1.24722 0.77906 0.93379 0.70966 1.93130 1.74996 1.96590 1.54037 1.93131 1.78327 1.96137 1.51159 0.88147 0.85535 0.87832 0.86764 0.86783 0.76429 0.90909 0.81244 0.72527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 11.44 127.77 1.46 2.41 16 2 N -0.34 -7.67 4.04 -480.58 -1.94 -9.61 16 3 N -0.23 -7.50 12.61 -48.47 -0.61 -8.11 16 4 C 0.05 1.66 7.12 42.31 0.30 1.96 16 5 C 0.55 20.53 7.97 70.29 0.56 21.09 16 6 O -0.50 -19.04 16.69 19.87 0.33 -18.71 16 7 O -0.33 -13.90 9.76 -50.00 -0.49 -14.39 16 8 C 0.07 2.75 5.95 71.24 0.42 3.18 16 9 C 0.44 22.32 7.86 87.66 0.69 23.01 16 10 O -0.62 -36.90 16.08 15.73 0.25 -36.65 16 11 N -0.56 -29.32 5.29 -306.97 -1.62 -30.94 16 12 C -0.34 -19.42 9.68 84.04 0.81 -18.61 16 13 H 0.08 5.08 7.16 -2.91 -0.02 5.06 16 14 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 15 N -0.91 -49.25 13.05 21.66 0.28 -48.97 16 16 Si 1.00 42.76 29.55 68.60 2.03 44.79 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 C -0.27 -7.29 8.80 22.36 0.20 -7.09 16 21 C 0.28 5.84 7.46 83.45 0.62 6.47 16 22 O -0.30 -3.77 10.35 -90.96 -0.94 -4.71 16 23 C 0.42 3.14 5.99 113.37 0.68 3.82 16 24 F -0.21 -2.79 16.07 44.97 0.72 -2.06 16 25 F -0.21 -2.79 16.12 44.97 0.72 -2.07 16 26 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.13 0.62 8.04 -2.39 -0.02 0.60 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 30 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 31 H 0.40 19.79 7.90 -92.71 -0.73 19.05 16 32 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 33 H 0.17 4.30 6.61 -2.91 -0.02 4.28 16 34 H 0.26 -1.60 8.14 -2.39 -0.02 -1.62 16 Total: -1.00 -81.49 327.42 5.42 -76.07 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.46 Total: 19.11 kcal Atomic # 6 Polarization: 30.03 SS G_CDS: 6.22 Total: 36.24 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -3.89 Total: -97.62 kcal Atomic # 8 Polarization: -73.61 SS G_CDS: -0.85 Total: -74.46 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 1.45 Total: -4.13 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -81.49 5.42 -76.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767725354.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.225 kcal (2) G-P(sol) polarization free energy of solvation -81.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds