Wall clock time and date at job start Fri Apr 10 2020 14:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29022 * 124.91540 * 2 1 4 4 C 1.31787 * 117.12674 * 179.97438 * 3 2 1 5 5 C 1.33640 * 114.49721 * 359.97438 * 4 3 2 6 6 C 1.50694 * 126.03881 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46711 * 90.00171 * 6 5 4 8 8 N 1.46506 * 109.47013 * 180.02562 * 7 6 5 9 9 S 1.65601 * 119.99997 * 164.44499 * 8 7 6 10 10 O 1.42102 * 106.40179 * 176.31474 * 9 8 7 11 11 O 1.42094 * 106.39999 * 309.23632 * 9 8 7 12 12 N 1.65597 * 107.21705 * 62.77547 * 9 8 7 13 13 C 1.46508 * 119.99916 * 273.11187 * 12 9 8 14 14 C 1.46503 * 120.00253 * 93.10978 * 12 9 8 15 15 C 1.50699 * 109.46931 * 95.56906 * 14 12 9 16 16 H 1.08007 * 119.99848 * 4.72008 * 15 14 12 17 17 C 1.37878 * 120.00121 * 184.71463 * 15 14 12 18 18 N 1.31515 * 119.99952 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46873 * 60.00832 * 19 17 15 21 21 H 1.48504 * 109.46776 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47186 * 300.00416 * 19 17 15 23 23 S 1.70983 * 124.91631 * 180.31634 * 2 1 3 24 24 H 1.08996 * 109.47133 * 89.98060 * 1 2 3 25 25 H 1.09007 * 109.47107 * 209.97227 * 1 2 3 26 26 H 1.08994 * 109.47243 * 329.97161 * 1 2 3 27 27 H 1.07993 * 122.74952 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.47745 * 210.00395 * 6 5 4 29 29 H 1.09006 * 109.47229 * 330.00882 * 6 5 4 30 30 H 1.08999 * 109.47503 * 299.99840 * 7 6 5 31 31 H 1.08995 * 109.47397 * 60.00439 * 7 6 5 32 32 H 0.97005 * 120.00040 * 344.44403 * 8 7 6 33 33 H 1.09002 * 109.47204 * 90.00163 * 13 12 9 34 34 H 1.09001 * 109.46913 * 210.00144 * 13 12 9 35 35 H 1.08995 * 109.46718 * 329.99745 * 13 12 9 36 36 H 1.08999 * 109.47092 * 215.57162 * 14 12 9 37 37 H 1.08998 * 109.46977 * 335.57649 * 14 12 9 38 38 H 0.96994 * 120.00056 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 3.9354 -0.4006 0.0015 6 6 5.3574 -0.8994 0.0018 7 6 5.8387 -1.0670 1.4444 8 7 7.2214 -1.5514 1.4447 9 16 8.1300 -1.4613 2.8263 10 8 9.3738 -2.0812 2.5297 11 8 8.0199 -0.1234 3.2923 12 7 7.3916 -2.4142 3.9616 13 6 6.3297 -1.8595 4.8049 14 6 7.8002 -3.8118 4.1228 15 6 8.8117 -3.9143 5.2352 16 1 9.0628 -3.0410 5.8189 17 6 9.4166 -5.1230 5.5077 18 7 9.1112 -6.1863 4.7966 19 14 10.6710 -5.2498 6.8861 20 1 10.0332 -4.8699 8.1722 21 1 11.1703 -6.6456 6.9740 22 1 11.8069 -4.3348 6.6074 23 16 2.4857 -1.4020 -0.0077 24 1 -0.3633 0.0003 -1.0276 25 1 -0.3634 -0.8903 0.5134 26 1 -0.3633 0.8897 0.5142 27 1 4.2531 1.7001 0.0002 28 1 5.4057 -1.8599 -0.5113 29 1 5.9949 -0.1802 -0.5126 30 1 5.7905 -0.1066 1.9575 31 1 5.2014 -1.7862 1.9589 32 1 7.6047 -1.9249 0.6357 33 1 5.3653 -2.0072 4.3188 34 1 6.3310 -2.3653 5.7705 35 1 6.5027 -0.7936 4.9528 36 1 6.9287 -4.4193 4.3670 37 1 8.2441 -4.1700 3.1940 38 1 9.5370 -7.0365 4.9881 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771969316.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:28 Heat of formation + Delta-G solvation = -38.677631 kcal Electronic energy + Delta-G solvation = -22286.660780 eV Core-core repulsion = 18803.742683 eV Total energy + Delta-G solvation = -3482.918097 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.081 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.96534 -36.72136 -36.18516 -35.48977 -35.17249 -33.01475 -32.43997 -30.65077 -27.78376 -26.88455 -25.08451 -24.25159 -22.78413 -22.28251 -19.70419 -18.95216 -18.23384 -17.26779 -16.71843 -16.46492 -16.08013 -15.44610 -15.21745 -14.89957 -14.71044 -14.29440 -14.00468 -13.51211 -13.42210 -13.28526 -13.05674 -12.61390 -12.36149 -12.28631 -12.19850 -12.12810 -11.62284 -11.48569 -11.39416 -11.23886 -11.16596 -11.05997 -10.71908 -10.50049 -10.05137 -9.86984 -9.79157 -9.49362 -9.41408 -8.98286 -8.44659 -8.08454 -6.07039 -4.11312 0.41461 1.04914 1.22453 1.48631 2.57265 3.33356 3.37007 3.41211 3.47631 3.89570 4.10391 4.44204 4.60182 4.70391 4.74646 4.78225 5.05289 5.07088 5.10885 5.23535 5.28205 5.36551 5.50051 5.55005 5.65503 5.75088 5.94139 5.95314 6.00331 6.28369 6.54303 7.04828 7.24699 7.39664 7.47862 7.60996 7.90328 8.19731 8.90926 9.54070 11.01619 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.002975 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.102673 B = 9408.260791 C = 9880.478831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.039 3.961 3 N -0.474 5.474 4 C 0.040 3.960 5 C -0.218 4.218 6 C -0.049 4.049 7 C 0.126 3.874 8 N -1.136 6.136 9 S 2.782 3.218 10 O -0.962 6.962 11 O -0.997 6.997 12 N -0.995 5.995 13 C 0.093 3.907 14 C 0.257 3.743 15 C -0.532 4.532 16 H 0.060 0.940 17 C 0.063 3.937 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.274 1.274 23 S 0.127 5.873 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.177 0.823 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.413 0.587 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.043 0.957 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.486 9.514 -11.676 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.238 4.238 3 N -0.189 5.189 4 C -0.111 4.111 5 C -0.340 4.340 6 C -0.090 4.090 7 C -0.002 4.002 8 N -0.894 5.894 9 S 2.790 3.210 10 O -0.946 6.946 11 O -0.981 6.981 12 N -0.838 5.838 13 C -0.053 4.053 14 C 0.135 3.865 15 C -0.571 4.571 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.200 1.200 23 S 0.382 5.618 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.194 0.806 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.246 0.754 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.236 9.350 -11.406 21.935 hybrid contribution 1.117 0.100 0.361 1.178 sum -15.119 9.450 -11.046 20.974 Atomic orbital electron populations 1.20441 0.85237 1.04297 1.03817 1.27054 1.01851 0.91183 1.03752 1.66293 1.04915 1.31645 1.16063 1.21760 0.91111 0.95927 1.02289 1.25830 0.99662 0.96282 1.12182 1.20237 0.88531 1.02718 0.97502 1.21194 0.82380 0.99967 0.96639 1.56289 1.24124 1.78930 1.30093 1.01944 0.73223 0.73156 0.72712 1.93648 1.39799 1.77015 1.84138 1.93524 1.87112 1.36830 1.80601 1.57592 1.51199 1.25916 1.49101 1.21384 0.88780 0.98727 0.96454 1.19066 0.95340 0.74083 0.98018 1.21463 1.23552 0.95433 1.16692 0.92191 1.24934 0.96712 0.95580 0.96726 1.69904 1.43284 1.00314 1.39912 0.86571 0.81768 0.77099 0.82094 1.20161 1.21145 1.19988 1.84119 0.97534 1.12012 1.68136 0.89665 0.90034 0.89273 0.80617 0.89598 0.88709 0.90253 0.91646 0.75442 0.94411 0.90314 0.91594 0.95010 0.93946 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.46 36.01 0.38 -0.08 16 2 C 0.04 0.36 7.39 -13.46 -0.10 0.26 16 3 N -0.47 -5.32 10.54 -11.86 -0.13 -5.45 16 4 C 0.04 0.41 11.25 -19.18 -0.22 0.20 16 5 C -0.22 -2.10 5.85 -35.92 -0.21 -2.31 16 6 C -0.05 -0.44 5.89 -27.88 -0.16 -0.60 16 7 C 0.13 1.46 6.24 -4.04 -0.03 1.43 16 8 N -1.14 -15.76 6.05 -10.61 -0.06 -15.82 16 9 S 2.78 54.02 6.09 -107.50 -0.65 53.37 16 10 O -0.96 -22.75 16.99 -57.17 -0.97 -23.72 16 11 O -1.00 -20.53 16.34 -57.17 -0.93 -21.47 16 12 N -1.00 -20.34 3.23 -123.05 -0.40 -20.74 16 13 C 0.09 1.57 10.69 59.85 0.64 2.21 16 14 C 0.26 6.39 5.10 -5.19 -0.03 6.36 16 15 C -0.53 -14.92 9.38 -34.44 -0.32 -15.25 16 16 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 19 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 S 0.13 1.13 23.18 -107.50 -2.49 -1.37 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.35 8.14 -51.92 -0.42 -0.08 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.95 7.79 -51.93 -0.40 0.54 16 31 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 32 H 0.41 4.86 8.66 -34.47 -0.30 4.56 16 33 H 0.04 0.52 8.05 -51.93 -0.42 0.10 16 34 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 35 H 0.07 1.06 7.05 -51.93 -0.37 0.69 16 36 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 37 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -35.26 352.45 -9.97 -45.24 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.22 Total: -0.71 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -0.14 Total: -6.09 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: 0.15 Total: -67.39 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.91 Total: -45.19 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 55.15 SS G_CDS: -3.15 Total: 52.00 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.26 -9.97 -45.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771969316.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.559 kcal (2) G-P(sol) polarization free energy of solvation -35.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds