Wall clock time and date at job start Fri Apr 10 2020 14:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29022 * 124.91540 * 2 1 4 4 C 1.31787 * 117.12674 * 179.97438 * 3 2 1 5 5 C 1.33640 * 114.49721 * 359.97438 * 4 3 2 6 6 C 1.50694 * 126.03881 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46711 * 90.00171 * 6 5 4 8 8 N 1.46506 * 109.47013 * 180.02562 * 7 6 5 9 9 S 1.65601 * 119.99997 * 164.44499 * 8 7 6 10 10 O 1.42102 * 106.40179 * 176.31474 * 9 8 7 11 11 O 1.42094 * 106.39999 * 309.23632 * 9 8 7 12 12 N 1.65597 * 107.21705 * 62.77547 * 9 8 7 13 13 C 1.46508 * 119.99916 * 273.11187 * 12 9 8 14 14 C 1.46503 * 120.00253 * 93.10978 * 12 9 8 15 15 C 1.50699 * 109.46931 * 95.56906 * 14 12 9 16 16 H 1.08007 * 119.99848 * 4.72008 * 15 14 12 17 17 C 1.37878 * 120.00121 * 184.71463 * 15 14 12 18 18 N 1.31515 * 119.99952 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46873 * 60.00832 * 19 17 15 21 21 H 1.48504 * 109.46776 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47186 * 300.00416 * 19 17 15 23 23 S 1.70983 * 124.91631 * 180.31634 * 2 1 3 24 24 H 1.08996 * 109.47133 * 89.98060 * 1 2 3 25 25 H 1.09007 * 109.47107 * 209.97227 * 1 2 3 26 26 H 1.08994 * 109.47243 * 329.97161 * 1 2 3 27 27 H 1.07993 * 122.74952 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.47745 * 210.00395 * 6 5 4 29 29 H 1.09006 * 109.47229 * 330.00882 * 6 5 4 30 30 H 1.08999 * 109.47503 * 299.99840 * 7 6 5 31 31 H 1.08995 * 109.47397 * 60.00439 * 7 6 5 32 32 H 0.97005 * 120.00040 * 344.44403 * 8 7 6 33 33 H 1.09002 * 109.47204 * 90.00163 * 13 12 9 34 34 H 1.09001 * 109.46913 * 210.00144 * 13 12 9 35 35 H 1.08995 * 109.46718 * 329.99745 * 13 12 9 36 36 H 1.08999 * 109.47092 * 215.57162 * 14 12 9 37 37 H 1.08998 * 109.46977 * 335.57649 * 14 12 9 38 38 H 0.96994 * 120.00056 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 3.9354 -0.4006 0.0015 6 6 5.3574 -0.8994 0.0018 7 6 5.8387 -1.0670 1.4444 8 7 7.2214 -1.5514 1.4447 9 16 8.1300 -1.4613 2.8263 10 8 9.3738 -2.0812 2.5297 11 8 8.0199 -0.1234 3.2923 12 7 7.3916 -2.4142 3.9616 13 6 6.3297 -1.8595 4.8049 14 6 7.8002 -3.8118 4.1228 15 6 8.8117 -3.9143 5.2352 16 1 9.0628 -3.0410 5.8189 17 6 9.4166 -5.1230 5.5077 18 7 9.1112 -6.1863 4.7966 19 14 10.6710 -5.2498 6.8861 20 1 10.0332 -4.8699 8.1722 21 1 11.1703 -6.6456 6.9740 22 1 11.8069 -4.3348 6.6074 23 16 2.4857 -1.4020 -0.0077 24 1 -0.3633 0.0003 -1.0276 25 1 -0.3634 -0.8903 0.5134 26 1 -0.3633 0.8897 0.5142 27 1 4.2531 1.7001 0.0002 28 1 5.4057 -1.8599 -0.5113 29 1 5.9949 -0.1802 -0.5126 30 1 5.7905 -0.1066 1.9575 31 1 5.2014 -1.7862 1.9589 32 1 7.6047 -1.9249 0.6357 33 1 5.3653 -2.0072 4.3188 34 1 6.3310 -2.3653 5.7705 35 1 6.5027 -0.7936 4.9528 36 1 6.9287 -4.4193 4.3670 37 1 8.2441 -4.1700 3.1940 38 1 9.5370 -7.0365 4.9881 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771969316.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:39:28 Heat of formation + Delta-G solvation = -65.363055 kcal Electronic energy + Delta-G solvation = -22287.817947 eV Core-core repulsion = 18803.742683 eV Total energy + Delta-G solvation = -3484.075263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.081 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.68138 -38.31756 -37.31920 -37.12099 -36.85454 -34.50586 -33.81018 -31.35781 -29.66413 -27.68649 -26.78480 -24.97850 -24.21559 -23.58780 -20.65706 -20.11035 -19.11616 -18.82515 -18.42354 -18.16561 -17.45587 -16.73166 -16.25169 -16.08678 -15.70882 -15.61004 -15.06299 -14.93667 -14.65624 -14.24146 -14.07923 -13.89781 -13.67951 -13.36090 -13.30038 -13.19650 -13.04252 -13.01583 -12.93061 -12.90711 -12.63931 -12.48074 -12.35451 -12.03921 -11.92480 -11.77398 -10.62094 -10.58746 -10.52385 -10.21304 -9.80688 -9.67124 -8.20526 -6.32469 -0.38365 -0.22189 0.38971 0.78847 1.39334 1.42913 1.49857 1.83439 2.03952 2.40386 2.63868 3.10713 3.29416 3.45657 3.82402 3.94482 3.98013 4.11261 4.18871 4.43442 4.48054 4.62886 4.67426 4.69265 4.72466 4.82193 4.98247 5.04029 5.06454 5.09163 5.20545 5.28841 5.44664 5.69960 5.86417 6.09155 6.15852 6.75907 6.77927 7.36528 8.86967 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.002975 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.102673 B = 9408.260791 C = 9880.478831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.036 3.964 3 N -0.506 5.506 4 C 0.029 3.971 5 C -0.227 4.227 6 C -0.041 4.041 7 C 0.119 3.881 8 N -1.118 6.118 9 S 2.799 3.201 10 O -1.010 7.010 11 O -1.010 7.010 12 N -1.003 6.003 13 C 0.087 3.913 14 C 0.272 3.728 15 C -0.553 4.553 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.955 3.045 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.278 1.278 23 S 0.141 5.859 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.186 0.814 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.425 0.575 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.028 0.972 37 H 0.021 0.979 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.642 9.771 -11.858 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.241 4.241 3 N -0.222 5.222 4 C -0.121 4.121 5 C -0.349 4.349 6 C -0.082 4.082 7 C -0.008 4.008 8 N -0.882 5.882 9 S 2.807 3.193 10 O -0.994 6.994 11 O -0.993 6.993 12 N -0.844 5.844 13 C -0.059 4.059 14 C 0.148 3.852 15 C -0.593 4.593 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.780 3.220 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.203 1.203 23 S 0.396 5.604 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.203 0.797 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.261 0.739 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.039 0.961 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.409 9.618 -11.580 23.014 hybrid contribution 1.356 0.079 0.353 1.403 sum -16.053 9.697 -11.227 21.858 Atomic orbital electron populations 1.20617 0.83128 1.05204 1.05035 1.27644 1.03238 0.90964 1.02293 1.66342 1.05490 1.32723 1.17599 1.22002 0.91253 0.96616 1.02249 1.25868 1.00071 0.96311 1.12684 1.20181 0.88420 1.03858 0.95770 1.21425 0.80675 0.99917 0.98748 1.55752 1.24950 1.78822 1.28653 1.01166 0.72544 0.72452 0.73127 1.93580 1.43048 1.77774 1.84961 1.93504 1.87264 1.37182 1.81360 1.57468 1.52146 1.24175 1.50660 1.21607 0.89326 0.98830 0.96129 1.18623 0.94328 0.76295 0.95971 1.21838 1.24469 0.95358 1.17588 0.92894 1.25746 0.98565 0.95361 0.99055 1.69993 1.44310 1.00754 1.41240 0.85653 0.79235 0.77367 0.79739 1.18780 1.20117 1.20328 1.84043 0.97068 1.11551 1.67756 0.88187 0.88294 0.89166 0.79734 0.88391 0.87336 0.90380 0.91137 0.73942 0.90951 0.91043 0.90752 0.95398 0.96116 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.46 71.24 0.75 -0.03 16 2 C 0.04 0.60 7.39 88.52 0.65 1.26 16 3 N -0.51 -10.77 10.54 -191.45 -2.02 -12.79 16 4 C 0.03 0.57 11.25 83.66 0.94 1.51 16 5 C -0.23 -3.99 5.85 24.64 0.14 -3.84 16 6 C -0.04 -0.65 5.89 29.85 0.18 -0.47 16 7 C 0.12 2.52 6.24 86.38 0.54 3.06 16 8 N -1.12 -29.57 6.05 -187.48 -1.13 -30.70 16 9 S 2.80 107.72 6.09 -56.49 -0.34 107.38 16 10 O -1.01 -48.42 16.99 -128.00 -2.17 -50.59 16 11 O -1.01 -40.80 16.34 -128.00 -2.09 -42.89 16 12 N -1.00 -40.62 3.23 -543.21 -1.75 -42.37 16 13 C 0.09 2.81 10.69 127.77 1.37 4.18 16 14 C 0.27 13.64 5.10 85.63 0.44 14.08 16 15 C -0.55 -31.31 9.38 25.60 0.24 -31.07 16 16 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 17 C 0.01 0.70 5.46 84.65 0.46 1.17 16 18 N -0.92 -54.16 13.29 21.45 0.28 -53.87 16 19 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 S 0.14 2.23 23.18 -56.49 -1.31 0.92 16 24 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.08 1.71 7.79 -2.39 -0.02 1.69 16 31 H 0.07 1.45 8.05 -2.39 -0.02 1.43 16 32 H 0.42 9.41 8.66 -96.74 -0.84 8.57 16 33 H 0.07 1.83 8.05 -2.39 -0.02 1.81 16 34 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 35 H 0.07 2.28 7.05 -2.39 -0.02 2.27 16 36 H 0.03 1.41 8.11 -2.39 -0.02 1.39 16 37 H 0.02 1.13 7.50 -2.39 -0.02 1.11 16 38 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -75.39 352.45 -2.57 -77.96 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.24 Total: 10.48 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 5.70 Total: -10.17 kcal Atomic # 7 Polarization: -135.11 SS G_CDS: -4.62 Total: -139.73 kcal Atomic # 8 Polarization: -89.22 SS G_CDS: -4.27 Total: -93.48 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 109.96 SS G_CDS: -1.65 Total: 108.30 kcal Total: -75.39 -2.57 -77.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771969316.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.594 kcal (2) G-P(sol) polarization free energy of solvation -75.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds