Wall clock time and date at job start Fri Apr 10 2020 14:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47166 * 2 1 4 4 C 1.50699 * 109.47071 * 120.00420 * 2 1 3 5 5 H 1.07994 * 120.00252 * 85.04211 * 4 2 1 6 6 C 1.37875 * 119.99711 * 265.03695 * 4 2 1 7 7 N 1.31513 * 120.00199 * 176.48703 * 6 4 2 8 8 Si 1.86798 * 120.00119 * 356.49367 * 6 4 2 9 9 H 1.48505 * 109.47354 * 274.91976 * 8 6 4 10 10 H 1.48499 * 109.47339 * 34.91598 * 8 6 4 11 11 H 1.48503 * 109.47468 * 154.91826 * 8 6 4 12 12 N 1.46505 * 109.46854 * 240.00321 * 2 1 3 13 13 C 1.46504 * 119.99642 * 299.99491 * 12 2 1 14 14 S 1.65593 * 120.00236 * 120.00016 * 12 2 1 15 15 O 1.42091 * 106.40429 * 203.53584 * 14 12 2 16 16 O 1.42107 * 106.40178 * 336.46054 * 14 12 2 17 17 N 1.65607 * 107.21875 * 89.99414 * 14 12 2 18 18 C 1.46503 * 119.99606 * 65.00187 * 17 14 12 19 19 C 1.53001 * 109.47101 * 164.99756 * 18 17 14 20 20 C 1.50696 * 109.47347 * 179.97438 * 19 18 17 21 21 C 1.35138 * 127.24570 * 89.71079 * 20 19 18 22 22 C 1.37809 * 114.76126 * 179.86957 * 21 20 19 23 23 N 1.30089 * 116.87725 * 0.44321 * 22 21 20 24 24 S 1.69598 * 107.14986 * 359.76302 * 23 22 21 25 25 H 1.08998 * 109.47291 * 305.54462 * 1 2 3 26 26 H 1.09001 * 109.47598 * 65.54659 * 1 2 3 27 27 H 1.09007 * 109.47055 * 185.54733 * 1 2 3 28 28 H 0.97004 * 120.00444 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47143 * 90.00796 * 13 12 2 30 30 H 1.09003 * 109.46694 * 210.00032 * 13 12 2 31 31 H 1.09001 * 109.47426 * 330.00304 * 13 12 2 32 32 H 0.96993 * 119.99977 * 244.99971 * 17 14 12 33 33 H 1.08996 * 109.47261 * 284.99664 * 18 17 14 34 34 H 1.09003 * 109.47031 * 45.00159 * 18 17 14 35 35 H 1.09002 * 109.47345 * 300.00297 * 19 18 17 36 36 H 1.09000 * 109.46635 * 59.99812 * 19 18 17 37 37 H 1.08001 * 122.62375 * 0.03557 * 21 20 19 38 38 H 1.07999 * 121.56249 * 180.21103 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.1361 -1.7854 1.2287 6 6 2.3595 0.0119 2.3583 7 7 2.7318 -0.6126 3.4541 8 14 2.2738 1.8777 2.3299 9 1 3.5439 2.4234 1.7874 10 1 1.1427 2.3083 1.4694 11 1 2.0667 2.3849 3.7101 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0932 -1.4280 14 16 2.9703 0.1142 -2.2863 15 8 2.8227 -0.5645 -3.5259 16 8 2.6903 1.4973 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1357 -1.4441 -1.8416 19 6 6.6577 -1.3312 -1.7337 20 6 7.2666 -2.7094 -1.7573 21 6 7.6645 -3.4094 -2.8426 22 6 8.1921 -4.6521 -2.5664 23 7 8.2378 -5.0069 -1.3157 24 16 7.5948 -3.7262 -0.4088 25 1 -0.3634 0.5974 0.8361 26 1 -0.3634 0.4254 -0.9355 27 1 -0.3633 -1.0229 0.0993 28 1 2.9616 -0.1044 4.2478 29 1 0.7375 -2.1444 -1.9994 30 1 2.4628 -2.5818 -1.9865 31 1 1.5295 -2.5969 -0.4708 32 1 5.0733 0.6550 -1.5283 33 1 4.7540 -2.0247 -1.0019 34 1 4.8736 -1.9407 -2.7759 35 1 7.0395 -0.7505 -2.5734 36 1 6.9198 -0.8345 -0.7995 37 1 7.5783 -3.0239 -3.8478 38 1 8.5474 -5.3027 -3.3519 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882562224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:40 Heat of formation + Delta-G solvation = -38.930020 kcal Electronic energy + Delta-G solvation = -23156.514043 eV Core-core repulsion = 19673.585002 eV Total energy + Delta-G solvation = -3482.929041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.96387 -36.86792 -36.38404 -36.01031 -35.38483 -32.53687 -32.52696 -29.97686 -28.66743 -25.73219 -25.21587 -24.82713 -22.69742 -20.74793 -20.01897 -18.98470 -17.87071 -17.52449 -17.01045 -16.59563 -16.15696 -15.64098 -15.18519 -14.83192 -14.35859 -14.06980 -13.63593 -13.37401 -13.27586 -13.03436 -12.69923 -12.56318 -12.44488 -12.13045 -11.97964 -11.80145 -11.65457 -11.53790 -11.48346 -11.22861 -11.01580 -10.84476 -10.72369 -10.52470 -10.41404 -9.86856 -9.61355 -9.48592 -9.23107 -8.82811 -8.70564 -8.11371 -6.25285 -4.26441 0.56375 1.12669 1.39728 1.80486 2.34650 3.18195 3.28491 3.35669 3.35917 3.99419 4.27409 4.38888 4.75940 4.79673 4.91022 5.06244 5.07673 5.09978 5.41716 5.49221 5.52590 5.67294 5.76796 5.91848 6.04670 6.04996 6.12171 6.34710 6.42168 6.46073 6.53871 6.65171 6.91131 7.12591 7.19859 7.42293 7.62478 8.35364 8.79131 9.35991 10.86278 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.004736 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.623289 B = 5910.459401 C = 6953.671373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.233 3.767 3 H 0.056 0.944 4 C -0.519 4.519 5 H 0.083 0.917 6 C 0.079 3.921 7 N -0.887 5.887 8 Si 0.860 3.140 9 H -0.271 1.271 10 H -0.259 1.259 11 H -0.284 1.284 12 N -0.985 5.985 13 C 0.104 3.896 14 S 2.778 3.222 15 O -0.995 6.995 16 O -0.985 6.985 17 N -1.127 6.127 18 C 0.128 3.872 19 C -0.053 4.053 20 C -0.162 4.162 21 C -0.210 4.210 22 C 0.088 3.912 23 N -0.468 5.468 24 S 0.274 5.726 25 H 0.054 0.946 26 H 0.027 0.973 27 H 0.053 0.947 28 H 0.267 0.733 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.413 0.587 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.157 0.843 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.487 -3.564 -10.766 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.130 3.870 3 H 0.074 0.926 4 C -0.559 4.559 5 H 0.101 0.899 6 C -0.125 4.125 7 N -0.524 5.524 8 Si 0.686 3.314 9 H -0.196 1.196 10 H -0.184 1.184 11 H -0.210 1.210 12 N -0.828 5.828 13 C -0.043 4.043 14 S 2.787 3.213 15 O -0.979 6.979 16 O -0.970 6.970 17 N -0.886 5.886 18 C 0.000 4.000 19 C -0.094 4.094 20 C -0.293 4.293 21 C -0.245 4.245 22 C -0.109 4.109 23 N -0.289 5.289 24 S 0.427 5.573 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.246 0.754 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.174 0.826 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 8.372 -4.143 -9.411 13.260 hybrid contribution 0.323 1.637 -1.168 2.037 sum 8.695 -2.506 -10.579 13.922 Atomic orbital electron populations 1.22172 0.97903 1.01168 0.99130 1.19097 0.91824 0.92905 0.83168 0.92610 1.21178 1.44037 0.96013 0.94688 0.89920 1.24962 0.94058 0.98095 0.95373 1.69878 1.44457 1.35970 1.02080 0.87131 0.80046 0.86523 0.77710 1.19638 1.18353 1.21013 1.57887 1.64501 1.21454 1.38918 1.21247 0.99136 0.81825 1.02043 1.01994 0.72653 0.73143 0.73503 1.93544 1.85928 1.76228 1.42175 1.93582 1.83716 1.32659 1.87002 1.55966 1.32411 1.14737 1.85472 1.21177 0.92050 0.83992 1.02803 1.20296 0.94448 0.89808 1.04861 1.25394 1.03063 1.02034 0.98788 1.21356 1.06338 0.95458 1.01311 1.22805 0.98072 0.95848 0.94213 1.76765 1.22596 1.21651 1.07911 1.84460 1.54321 1.04394 1.14172 0.92690 0.95351 0.92830 0.92324 0.93740 0.93010 0.89967 0.75385 0.90620 0.90363 0.88800 0.88964 0.82575 0.80175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.09 37.16 0.34 -2.59 16 2 C 0.23 5.19 2.26 -69.08 -0.16 5.04 16 3 H 0.06 1.32 4.12 -51.93 -0.21 1.10 16 4 C -0.52 -13.00 8.72 -34.44 -0.30 -13.30 16 5 H 0.08 2.20 6.82 -52.49 -0.36 1.84 16 6 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.89 -24.87 13.96 55.43 0.77 -24.10 16 8 Si 0.86 20.26 26.91 -169.99 -4.57 15.68 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.26 -5.97 6.73 56.52 0.38 -5.59 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.99 -19.06 3.12 -115.84 -0.36 -19.42 16 13 C 0.10 1.73 9.45 59.85 0.57 2.29 16 14 S 2.78 51.15 6.09 -107.50 -0.66 50.49 16 15 O -1.00 -19.13 16.68 -57.17 -0.95 -20.09 16 16 O -0.99 -20.98 16.70 -57.17 -0.95 -21.93 16 17 N -1.13 -16.66 6.06 -10.61 -0.06 -16.72 16 18 C 0.13 1.64 6.23 -4.04 -0.03 1.62 16 19 C -0.05 -0.55 5.93 -27.88 -0.17 -0.71 16 20 C -0.16 -1.74 5.85 -35.41 -0.21 -1.95 16 21 C -0.21 -1.97 10.17 -40.84 -0.42 -2.38 16 22 C 0.09 0.85 11.27 -18.45 -0.21 0.65 16 23 N -0.47 -5.85 12.09 28.86 0.35 -5.50 16 24 S 0.27 3.35 23.72 -107.50 -2.55 0.80 16 25 H 0.05 1.12 7.96 -51.93 -0.41 0.71 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.03 7.86 -51.93 -0.41 0.62 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 31 H 0.08 1.42 6.56 -51.93 -0.34 1.07 16 32 H 0.41 5.36 8.65 -34.47 -0.30 5.06 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.97 7.75 -51.93 -0.40 0.56 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 343.38 15.07 5.17 5.17 Total: -1.00 -31.89 343.38 -9.44 -41.33 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.95 Total: 3.63 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -0.67 Total: -9.35 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: 0.70 Total: -65.74 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -1.91 Total: -42.02 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.57 Total: 15.68 kcal Atomic # 16 Polarization: 54.50 SS G_CDS: -3.20 Total: 51.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.89 -9.44 -41.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882562224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.401 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds