Wall clock time and date at job start Fri Apr 10 2020 14:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47166 * 2 1 4 4 C 1.50699 * 109.47071 * 120.00420 * 2 1 3 5 5 H 1.07994 * 120.00252 * 85.04211 * 4 2 1 6 6 C 1.37875 * 119.99711 * 265.03695 * 4 2 1 7 7 N 1.31513 * 120.00199 * 176.48703 * 6 4 2 8 8 Si 1.86798 * 120.00119 * 356.49367 * 6 4 2 9 9 H 1.48505 * 109.47354 * 274.91976 * 8 6 4 10 10 H 1.48499 * 109.47339 * 34.91598 * 8 6 4 11 11 H 1.48503 * 109.47468 * 154.91826 * 8 6 4 12 12 N 1.46505 * 109.46854 * 240.00321 * 2 1 3 13 13 C 1.46504 * 119.99642 * 299.99491 * 12 2 1 14 14 S 1.65593 * 120.00236 * 120.00016 * 12 2 1 15 15 O 1.42091 * 106.40429 * 203.53584 * 14 12 2 16 16 O 1.42107 * 106.40178 * 336.46054 * 14 12 2 17 17 N 1.65607 * 107.21875 * 89.99414 * 14 12 2 18 18 C 1.46503 * 119.99606 * 65.00187 * 17 14 12 19 19 C 1.53001 * 109.47101 * 164.99756 * 18 17 14 20 20 C 1.50696 * 109.47347 * 179.97438 * 19 18 17 21 21 C 1.35138 * 127.24570 * 89.71079 * 20 19 18 22 22 C 1.37809 * 114.76126 * 179.86957 * 21 20 19 23 23 N 1.30089 * 116.87725 * 0.44321 * 22 21 20 24 24 S 1.69598 * 107.14986 * 359.76302 * 23 22 21 25 25 H 1.08998 * 109.47291 * 305.54462 * 1 2 3 26 26 H 1.09001 * 109.47598 * 65.54659 * 1 2 3 27 27 H 1.09007 * 109.47055 * 185.54733 * 1 2 3 28 28 H 0.97004 * 120.00444 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47143 * 90.00796 * 13 12 2 30 30 H 1.09003 * 109.46694 * 210.00032 * 13 12 2 31 31 H 1.09001 * 109.47426 * 330.00304 * 13 12 2 32 32 H 0.96993 * 119.99977 * 244.99971 * 17 14 12 33 33 H 1.08996 * 109.47261 * 284.99664 * 18 17 14 34 34 H 1.09003 * 109.47031 * 45.00159 * 18 17 14 35 35 H 1.09002 * 109.47345 * 300.00297 * 19 18 17 36 36 H 1.09000 * 109.46635 * 59.99812 * 19 18 17 37 37 H 1.08001 * 122.62375 * 0.03557 * 21 20 19 38 38 H 1.07999 * 121.56249 * 180.21103 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.1361 -1.7854 1.2287 6 6 2.3595 0.0119 2.3583 7 7 2.7318 -0.6126 3.4541 8 14 2.2738 1.8777 2.3299 9 1 3.5439 2.4234 1.7874 10 1 1.1427 2.3083 1.4694 11 1 2.0667 2.3849 3.7101 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0932 -1.4280 14 16 2.9703 0.1142 -2.2863 15 8 2.8227 -0.5645 -3.5259 16 8 2.6903 1.4973 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1357 -1.4441 -1.8416 19 6 6.6577 -1.3312 -1.7337 20 6 7.2666 -2.7094 -1.7573 21 6 7.6645 -3.4094 -2.8426 22 6 8.1921 -4.6521 -2.5664 23 7 8.2378 -5.0069 -1.3157 24 16 7.5948 -3.7262 -0.4088 25 1 -0.3634 0.5974 0.8361 26 1 -0.3634 0.4254 -0.9355 27 1 -0.3633 -1.0229 0.0993 28 1 2.9616 -0.1044 4.2478 29 1 0.7375 -2.1444 -1.9994 30 1 2.4628 -2.5818 -1.9865 31 1 1.5295 -2.5969 -0.4708 32 1 5.0733 0.6550 -1.5283 33 1 4.7540 -2.0247 -1.0019 34 1 4.8736 -1.9407 -2.7759 35 1 7.0395 -0.7505 -2.5734 36 1 6.9198 -0.8345 -0.7995 37 1 7.5783 -3.0239 -3.8478 38 1 8.5474 -5.3027 -3.3519 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882562224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:39 Heat of formation + Delta-G solvation = -62.722602 kcal Electronic energy + Delta-G solvation = -23157.545766 eV Core-core repulsion = 19673.585002 eV Total energy + Delta-G solvation = -3483.960765 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 319.081 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.77065 -38.39415 -37.99041 -37.11306 -36.92604 -34.46482 -33.50172 -31.66243 -29.58732 -27.30661 -26.99069 -25.73060 -23.61714 -22.44470 -20.84819 -20.34666 -19.30761 -18.89179 -18.30772 -18.28955 -17.46253 -16.74782 -16.45739 -15.99699 -15.75813 -15.29017 -14.94712 -14.73195 -14.47309 -14.40863 -14.16284 -14.01813 -13.56935 -13.46778 -13.29838 -13.26026 -13.06109 -12.99846 -12.93931 -12.80115 -12.56153 -12.45555 -12.05441 -11.82975 -11.76600 -11.36527 -11.25736 -10.72927 -10.55094 -10.39474 -9.70367 -9.69692 -8.28108 -6.31309 -0.37562 -0.19312 0.54976 0.97306 1.32666 1.39386 1.47168 1.60101 1.94221 2.32995 2.57606 3.09737 3.36520 3.60331 3.88236 3.97012 4.03886 4.27757 4.34613 4.42399 4.52365 4.65467 4.72045 4.75842 4.78736 4.88721 4.94604 5.00961 5.05002 5.11485 5.14041 5.34022 5.48562 5.56007 5.69450 5.88182 6.13250 6.36856 6.75698 7.34180 8.86692 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.004736 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.623289 B = 5910.459401 C = 6953.671373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.235 3.765 3 H 0.046 0.954 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.034 3.966 7 N -0.932 5.932 8 Si 0.901 3.099 9 H -0.265 1.265 10 H -0.250 1.250 11 H -0.283 1.283 12 N -0.993 5.993 13 C 0.098 3.902 14 S 2.794 3.206 15 O -1.000 7.000 16 O -1.013 7.013 17 N -1.119 6.119 18 C 0.123 3.877 19 C -0.047 4.047 20 C -0.162 4.162 21 C -0.199 4.199 22 C 0.095 3.905 23 N -0.496 5.496 24 S 0.213 5.787 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.266 0.734 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.423 0.577 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.188 0.812 38 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.915 -3.134 -13.321 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.130 3.870 3 H 0.064 0.936 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.166 4.166 7 N -0.571 5.571 8 Si 0.725 3.275 9 H -0.190 1.190 10 H -0.173 1.173 11 H -0.209 1.209 12 N -0.835 5.835 13 C -0.047 4.047 14 S 2.803 3.197 15 O -0.983 6.983 16 O -0.998 6.998 17 N -0.881 5.881 18 C -0.004 4.004 19 C -0.088 4.088 20 C -0.293 4.293 21 C -0.233 4.233 22 C -0.103 4.103 23 N -0.316 5.316 24 S 0.365 5.635 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.258 0.742 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.139 0.861 36 H 0.110 0.890 37 H 0.206 0.794 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 8.787 -3.718 -11.968 15.306 hybrid contribution 0.236 1.383 -0.536 1.502 sum 9.023 -2.335 -12.505 15.596 Atomic orbital electron populations 1.22134 0.96468 1.01852 0.99972 1.18918 0.92979 0.92134 0.82940 0.93607 1.21311 1.42721 0.95030 0.95710 0.92349 1.25542 0.94354 1.01482 0.95208 1.69987 1.46922 1.37350 1.02861 0.86450 0.80564 0.82624 0.77844 1.18970 1.17347 1.20908 1.57723 1.65320 1.22460 1.37970 1.21410 1.00794 0.80473 1.02023 1.01349 0.73025 0.72170 0.73174 1.93537 1.86368 1.76192 1.42252 1.93543 1.84538 1.34365 1.87324 1.55686 1.31243 1.16039 1.85168 1.21313 0.93794 0.82642 1.02670 1.20263 0.92441 0.89984 1.06079 1.25430 1.03679 1.01999 0.98158 1.21722 1.04546 0.94836 1.02213 1.23477 0.96365 0.96364 0.94082 1.76861 1.23834 1.21718 1.09157 1.84622 1.56247 1.06155 1.16430 0.93097 0.93507 0.92065 0.92426 0.92083 0.90963 0.91118 0.74235 0.92255 0.89314 0.86101 0.89030 0.79447 0.76601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.67 9.09 71.98 0.65 -5.02 16 2 C 0.24 10.22 2.26 44.24 0.10 10.32 16 3 H 0.05 2.11 4.12 -2.39 -0.01 2.10 16 4 C -0.51 -25.58 8.72 25.60 0.22 -25.36 16 5 H 0.06 3.18 6.82 -2.91 -0.02 3.16 16 6 C 0.03 1.81 5.47 84.65 0.46 2.28 16 7 N -0.93 -53.42 13.96 21.45 0.30 -53.12 16 8 Si 0.90 41.29 26.91 68.60 1.85 43.14 16 9 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 10 H -0.25 -10.97 6.73 99.48 0.67 -10.30 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 N -0.99 -37.03 3.12 -520.42 -1.62 -38.66 16 13 C 0.10 3.13 9.45 127.77 1.21 4.34 16 14 S 2.79 97.57 6.09 -56.49 -0.34 97.23 16 15 O -1.00 -35.87 16.68 -128.00 -2.14 -38.00 16 16 O -1.01 -41.44 16.70 -128.00 -2.14 -43.58 16 17 N -1.12 -30.96 6.06 -187.48 -1.14 -32.09 16 18 C 0.12 2.93 6.23 86.38 0.54 3.47 16 19 C -0.05 -0.86 5.93 29.85 0.18 -0.68 16 20 C -0.16 -3.18 5.85 24.97 0.15 -3.04 16 21 C -0.20 -3.09 10.17 21.45 0.22 -2.87 16 22 C 0.09 1.59 11.27 84.85 0.96 2.55 16 23 N -0.50 -11.98 12.09 -62.60 -0.76 -12.73 16 24 S 0.21 5.25 23.72 -56.49 -1.34 3.92 16 25 H 0.05 2.01 7.96 -2.39 -0.02 1.99 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 27 H 0.06 2.27 7.86 -2.38 -0.02 2.25 16 28 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.97 7.79 -2.39 -0.02 1.95 16 31 H 0.07 2.41 6.56 -2.39 -0.02 2.39 16 32 H 0.42 10.15 8.65 -96.75 -0.84 9.32 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.94 7.75 -2.39 -0.02 1.92 16 35 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.22 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -68.36 343.38 -2.43 -70.79 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.21 Total: 17.13 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 4.68 Total: -14.01 kcal Atomic # 7 Polarization: -133.39 SS G_CDS: -3.22 Total: -136.60 kcal Atomic # 8 Polarization: -77.31 SS G_CDS: -4.27 Total: -81.59 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.85 Total: 43.14 kcal Atomic # 16 Polarization: 102.83 SS G_CDS: -1.68 Total: 101.14 kcal Total: -68.36 -2.43 -70.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882562224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.065 kcal (2) G-P(sol) polarization free energy of solvation -68.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds