Wall clock time and date at job start Fri Apr 10 2020 14:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46721 * 2 1 4 4 H 1.09002 * 109.88164 * 307.14522 * 3 2 1 5 5 C 1.54327 * 109.88402 * 186.12978 * 3 2 1 6 6 H 1.09009 * 110.71747 * 336.75731 * 5 3 2 7 7 C 1.50700 * 110.72031 * 99.84578 * 5 3 2 8 8 O 1.20830 * 120.00039 * 0.02562 * 7 5 3 9 9 O 1.34232 * 120.00094 * 180.02562 * 7 5 3 10 10 C 1.55151 * 102.94865 * 218.39215 * 5 3 2 11 11 C 1.54909 * 101.57962 * 35.49983 * 10 5 3 12 12 N 1.47021 * 109.88606 * 68.32536 * 3 2 1 13 13 S 1.65603 * 125.64517 * 298.33592 * 12 3 2 14 14 O 1.42093 * 106.40230 * 346.63572 * 13 12 3 15 15 O 1.42109 * 106.40172 * 119.55436 * 13 12 3 16 16 N 1.65596 * 107.21665 * 233.09196 * 13 12 3 17 17 C 1.46506 * 119.99956 * 84.25382 * 16 13 12 18 18 C 1.46500 * 120.00414 * 264.24821 * 16 13 12 19 19 C 1.50694 * 109.47055 * 100.86611 * 18 16 13 20 20 H 1.07998 * 120.00057 * 5.46005 * 19 18 16 21 21 C 1.37881 * 120.00266 * 185.45076 * 19 18 16 22 22 N 1.31515 * 119.99553 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00203 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47463 * 89.99886 * 23 21 19 25 25 H 1.48502 * 109.47191 * 210.00094 * 23 21 19 26 26 H 1.48507 * 109.47399 * 330.00102 * 23 21 19 27 27 H 1.09005 * 109.47472 * 44.59030 * 1 2 3 28 28 H 1.09007 * 109.47199 * 164.58919 * 1 2 3 29 29 H 1.09000 * 109.47229 * 284.58989 * 1 2 3 30 30 H 1.09002 * 109.47316 * 119.99913 * 2 1 3 31 31 H 1.09006 * 109.47195 * 240.00616 * 2 1 3 32 32 H 0.96700 * 116.99836 * 180.02562 * 9 7 5 33 33 H 1.09002 * 111.00544 * 153.57228 * 10 5 3 34 34 H 1.08996 * 111.00395 * 277.39416 * 10 5 3 35 35 H 1.09003 * 110.36616 * 81.82973 * 11 10 5 36 36 H 1.09001 * 110.36987 * 204.04078 * 11 10 5 37 37 H 1.08996 * 109.47293 * 89.99677 * 17 16 13 38 38 H 1.08997 * 109.46829 * 209.99975 * 17 16 13 39 39 H 1.09000 * 109.46564 * 329.99681 * 17 16 13 40 40 H 1.08997 * 109.47909 * 220.87388 * 18 16 13 41 41 H 1.09004 * 109.46754 * 340.87202 * 18 16 13 42 42 H 0.97001 * 119.99772 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5798 1.9983 -0.8171 5 6 3.5753 1.4565 -0.1550 6 1 4.0046 0.5094 0.1723 7 6 3.9646 1.7516 -1.5806 8 8 3.1099 1.9377 -2.4141 9 8 5.2610 1.8077 -1.9244 10 6 4.0093 2.6105 0.7868 11 6 2.9870 2.4701 1.9422 12 7 1.7251 2.0842 1.2848 13 16 0.2048 2.3326 1.8926 14 8 -0.6985 2.1039 0.8199 15 8 0.1444 1.6256 3.1238 16 7 0.0847 3.9405 2.2703 17 6 -0.2749 4.9115 1.2340 18 6 0.3379 4.3919 3.6409 19 6 1.7258 4.9722 3.7302 20 1 2.3233 5.0829 2.8374 21 6 2.2328 5.3619 4.9518 22 7 1.5053 5.2268 6.0390 23 14 3.9529 6.0818 5.0624 24 1 3.8838 7.5563 4.9000 25 1 4.5413 5.7567 6.3866 26 1 4.8011 5.5049 3.9887 27 1 -0.3634 0.7319 -0.7215 28 1 -0.3634 -0.9908 -0.2731 29 1 -0.3634 0.2589 0.9945 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 5.4615 2.0005 -2.8506 33 1 5.0275 2.4601 1.1457 34 1 3.9102 3.5767 0.2922 35 1 3.3051 1.6937 2.6380 36 1 2.8701 3.4205 2.4630 37 1 -1.3585 5.0250 1.2026 38 1 0.1848 5.8732 1.4620 39 1 0.0817 4.5588 0.2662 40 1 -0.3926 5.1535 3.9135 41 1 0.2531 3.5463 4.3234 42 1 1.8620 5.5006 6.8984 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554412617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:11 Heat of formation + Delta-G solvation = -154.328097 kcal Electronic energy + Delta-G solvation = -27537.663783 eV Core-core repulsion = 23645.092267 eV Total energy + Delta-G solvation = -3892.571516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.72911 -38.43194 -36.68362 -36.23887 -35.57166 -35.35141 -32.97291 -32.54503 -31.26532 -28.21756 -27.72279 -25.17419 -24.62336 -22.69588 -22.25255 -21.26450 -20.34636 -18.60937 -17.96689 -17.56113 -17.20936 -16.61205 -16.31423 -15.72901 -15.44081 -15.02579 -14.69318 -14.17760 -13.82422 -13.70482 -13.33331 -13.23782 -13.08530 -12.83306 -12.52228 -12.39824 -12.21410 -12.00545 -11.82308 -11.67780 -11.51894 -11.29047 -11.20302 -11.14772 -10.95836 -10.84968 -10.76544 -10.68859 -10.59308 -10.44561 -10.25971 -10.02789 -9.75031 -8.64175 -8.56951 -8.08842 -6.18520 -4.26387 1.20875 2.03234 2.81821 3.19469 3.26500 3.28059 3.48840 4.02675 4.25818 4.29424 4.49587 4.84295 5.08601 5.12324 5.17292 5.18696 5.24560 5.38602 5.45591 5.55208 5.65172 5.78560 5.84391 6.02088 6.06765 6.08137 6.12301 6.24036 6.26228 6.29338 6.35229 6.44673 6.59922 6.67247 6.83526 7.29073 7.35559 7.61243 7.71475 7.77552 8.07571 8.77370 9.39236 10.89202 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.006107 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.171684 B = 4583.587779 C = 5942.867804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.146 4.146 3 C 0.167 3.833 4 H 0.096 0.904 5 C -0.093 4.093 6 H 0.122 0.878 7 C 0.491 3.509 8 O -0.510 6.510 9 O -0.514 6.514 10 C -0.113 4.113 11 C 0.100 3.900 12 N -1.015 6.015 13 S 2.798 3.202 14 O -0.988 6.988 15 O -0.975 6.975 16 N -0.996 5.996 17 C 0.107 3.893 18 C 0.239 3.761 19 C -0.546 4.546 20 H 0.066 0.934 21 C 0.067 3.933 22 N -0.884 5.884 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.284 1.284 26 H -0.271 1.271 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.409 0.591 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.058 0.942 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.072 -6.253 -13.019 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.185 4.185 3 C 0.060 3.940 4 H 0.114 0.886 5 C -0.113 4.113 6 H 0.140 0.860 7 C 0.333 3.667 8 O -0.397 6.397 9 O -0.325 6.325 10 C -0.152 4.152 11 C -0.024 4.024 12 N -0.853 5.853 13 S 2.808 3.192 14 O -0.972 6.972 15 O -0.958 6.958 16 N -0.838 5.838 17 C -0.039 4.039 18 C 0.117 3.883 19 C -0.585 4.585 20 H 0.084 0.916 21 C -0.138 4.138 22 N -0.521 5.521 23 Si 0.720 3.280 24 H -0.206 1.206 25 H -0.210 1.210 26 H -0.195 1.195 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.267 0.733 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.137 0.863 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.939 -6.879 -12.440 15.049 hybrid contribution 1.490 0.879 -0.495 1.799 sum 6.429 -6.000 -12.935 15.641 Atomic orbital electron populations 1.22262 0.93949 1.01814 1.03234 1.22156 0.97777 0.95869 1.02708 1.21206 0.91669 0.93998 0.87118 0.88648 1.22139 0.97416 1.03074 0.88699 0.85985 1.23185 0.79870 0.72291 0.91391 1.90733 1.51106 1.45589 1.52311 1.84545 1.28395 1.83443 1.36161 1.22781 1.00310 0.96753 0.95392 1.22448 0.81862 1.03798 0.94311 1.59197 1.22922 1.73787 1.29439 1.01575 0.72167 0.72868 0.72589 1.93643 1.61973 1.85097 1.56508 1.93594 1.85875 1.71314 1.45062 1.57617 1.83185 1.24591 1.18395 1.21211 0.99415 0.94268 0.89018 1.19289 0.96577 0.97163 0.75295 1.21499 1.00415 1.43016 0.93536 0.91577 1.24983 0.97813 0.95425 0.95551 1.69934 1.37145 1.46250 0.98774 0.86593 0.84146 0.79532 0.77749 1.20558 1.21004 1.19522 0.89862 0.93105 0.93458 0.91042 0.90698 0.73253 0.88927 0.90196 0.91256 0.86280 0.93610 0.90740 0.92958 0.94729 0.92423 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.00 37.16 0.30 -2.12 16 2 C -0.15 -1.98 5.45 -26.73 -0.15 -2.12 16 3 C 0.17 2.43 2.46 -66.95 -0.16 2.26 16 4 H 0.10 1.50 6.70 -51.93 -0.35 1.15 16 5 C -0.09 -1.08 2.97 -89.94 -0.27 -1.35 16 6 H 0.12 1.15 7.85 -51.92 -0.41 0.74 16 7 C 0.49 5.62 7.64 36.01 0.28 5.89 16 8 O -0.51 -7.29 16.18 -18.75 -0.30 -7.59 16 9 O -0.51 -4.38 13.42 -39.26 -0.53 -4.90 16 10 C -0.11 -1.39 6.53 -24.59 -0.16 -1.55 16 11 C 0.10 1.60 7.31 -2.53 -0.02 1.58 16 12 N -1.02 -17.28 3.44 -104.42 -0.36 -17.64 16 13 S 2.80 56.81 4.63 -107.50 -0.50 56.31 16 14 O -0.99 -19.89 12.31 -57.17 -0.70 -20.59 16 15 O -0.97 -23.19 16.50 -57.17 -0.94 -24.13 16 16 N -1.00 -20.73 3.24 -123.05 -0.40 -21.13 16 17 C 0.11 1.87 10.27 59.85 0.61 2.49 16 18 C 0.24 5.86 5.45 -5.20 -0.03 5.83 16 19 C -0.55 -13.59 7.70 -34.44 -0.27 -13.85 16 20 H 0.07 1.55 6.41 -52.49 -0.34 1.21 16 21 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 22 N -0.88 -24.57 13.29 55.43 0.74 -23.83 16 23 Si 0.89 19.60 29.54 -169.99 -5.02 14.58 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 26 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 27 H 0.08 1.37 6.82 -51.93 -0.35 1.02 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.84 5.05 -48.41 -0.24 0.60 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.41 1.76 9.10 45.56 0.41 2.17 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 0.99 8.04 -51.93 -0.42 0.58 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.12 2.21 4.70 -51.93 -0.24 1.97 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 39 H 0.05 0.82 7.94 -51.93 -0.41 0.41 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.57 6.77 -51.93 -0.35 1.22 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -32.23 345.81 -7.98 -40.21 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.21 Total: 4.81 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.02 Total: -62.60 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -2.48 Total: -57.22 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 16 Polarization: 56.81 SS G_CDS: -0.50 Total: 56.31 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.23 -7.98 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554412617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.119 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds