Wall clock time and date at job start Fri Apr 10 2020 14:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46883 * 2 1 4 4 H 1.09005 * 109.99587 * 52.52026 * 3 2 1 5 5 C 1.54329 * 109.88096 * 173.61256 * 3 2 1 6 6 H 1.08995 * 110.71895 * 23.07321 * 5 3 2 7 7 C 1.50697 * 110.72180 * 259.97510 * 5 3 2 8 8 O 1.20830 * 119.99943 * 2.44174 * 7 5 3 9 9 O 1.34231 * 119.99884 * 182.44570 * 7 5 3 10 10 C 1.55164 * 103.09700 * 141.52602 * 5 3 2 11 11 C 1.54908 * 101.58133 * 324.58374 * 10 5 3 12 12 N 1.47312 * 110.06699 * 291.35043 * 3 2 1 13 13 S 1.65600 * 125.61803 * 61.67873 * 12 3 2 14 14 O 1.42097 * 106.40370 * 241.18305 * 13 12 3 15 15 O 1.42098 * 106.40053 * 14.10132 * 13 12 3 16 16 N 1.65597 * 107.21903 * 127.64354 * 13 12 3 17 17 C 1.46498 * 120.00097 * 95.01460 * 16 13 12 18 18 C 1.46499 * 119.99851 * 275.01464 * 16 13 12 19 19 C 1.50697 * 109.47044 * 94.99897 * 18 16 13 20 20 H 1.07999 * 120.00408 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00050 * 179.97438 * 19 18 16 22 22 N 1.31517 * 120.00033 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00221 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46996 * 90.00265 * 23 21 19 25 25 H 1.48499 * 109.47309 * 210.00205 * 23 21 19 26 26 H 1.48501 * 109.46814 * 330.00385 * 23 21 19 27 27 H 1.08993 * 109.47381 * 315.08091 * 1 2 3 28 28 H 1.09007 * 109.46519 * 75.08505 * 1 2 3 29 29 H 1.09001 * 109.46741 * 195.07994 * 1 2 3 30 30 H 1.08993 * 109.47583 * 240.00688 * 2 1 3 31 31 H 1.08998 * 109.47329 * 119.99560 * 2 1 3 32 32 H 0.96704 * 116.99493 * 180.02562 * 9 7 5 33 33 H 1.08994 * 111.00575 * 82.66433 * 10 5 3 34 34 H 1.09002 * 111.00181 * 206.51730 * 10 5 3 35 35 H 1.09005 * 110.36563 * 155.84546 * 11 10 5 36 36 H 1.08995 * 110.37199 * 278.06202 * 11 10 5 37 37 H 1.09003 * 109.47025 * 94.96828 * 17 16 13 38 38 H 1.09001 * 109.47119 * 214.96381 * 17 16 13 39 39 H 1.08995 * 109.46908 * 334.96735 * 17 16 13 40 40 H 1.09001 * 109.47330 * 215.00055 * 18 16 13 41 41 H 1.09001 * 109.47594 * 334.99887 * 18 16 13 42 42 H 0.96997 * 120.00075 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5765 2.0018 0.8129 5 6 3.5747 1.4567 0.1615 6 1 4.0050 0.5082 -0.1598 7 6 3.9581 1.7582 1.5873 8 8 3.1003 1.9044 2.4256 9 8 5.2526 1.8644 1.9261 10 6 4.0168 2.6073 -0.7809 11 6 2.9998 2.4675 -1.9409 12 7 1.7335 2.0870 -1.2887 13 16 0.2170 2.3378 -1.9051 14 8 0.1570 1.6177 -3.1286 15 8 -0.6917 2.1262 -0.8334 16 7 0.1079 3.9421 -2.3009 17 6 0.3848 4.3789 -3.6716 18 6 -0.2655 4.9246 -1.2803 19 6 0.9802 5.5266 -0.6830 20 1 1.9528 5.2095 -1.0293 21 6 0.8783 6.4831 0.3048 22 7 -0.3061 6.8697 0.7261 23 14 2.4224 7.2299 1.0447 24 1 2.8126 8.4326 0.2660 25 1 2.1588 7.6168 2.4540 26 1 3.5231 6.2340 1.0023 27 1 -0.3634 0.7276 0.7256 28 1 -0.3632 0.2645 -0.9931 29 1 -0.3633 -0.9923 0.2674 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 5.4493 2.0585 2.8528 33 1 3.9180 3.5750 -0.2891 34 1 5.0363 2.4528 -1.1345 35 1 2.8869 3.4176 -2.4632 36 1 3.3198 1.6899 -2.6345 37 1 -0.5504 4.4451 -4.2277 38 1 0.8654 5.3570 -3.6511 39 1 1.0452 3.6595 -4.1557 40 1 -0.8668 5.7113 -1.7361 41 1 -0.8432 4.4334 -0.4972 42 1 -0.3778 7.5423 1.4213 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554412618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:14 Heat of formation + Delta-G solvation = -155.880499 kcal Electronic energy + Delta-G solvation = -27844.255065 eV Core-core repulsion = 23951.616232 eV Total energy + Delta-G solvation = -3892.638833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.56648 -38.33914 -36.67226 -36.06172 -35.56552 -35.39376 -32.93919 -32.47524 -31.23105 -28.13584 -27.79429 -25.09848 -24.53345 -22.64696 -22.28728 -21.21803 -20.25660 -18.54221 -17.87535 -17.47192 -17.20244 -16.55037 -16.27221 -15.60700 -15.42616 -15.06655 -14.54047 -14.17648 -13.76977 -13.65771 -13.35344 -13.18075 -13.11553 -12.86096 -12.41691 -12.32613 -12.20205 -11.98478 -11.83370 -11.62099 -11.48898 -11.30342 -11.21251 -11.16243 -10.96936 -10.83514 -10.68276 -10.57053 -10.47452 -10.36176 -10.26392 -10.04609 -9.76514 -8.67156 -8.49777 -8.08432 -6.11746 -4.17874 1.20209 2.22955 2.96043 3.22552 3.28644 3.30890 3.46210 4.03791 4.32145 4.35338 4.50140 4.90028 5.07226 5.16178 5.23224 5.24775 5.31935 5.38762 5.48387 5.53616 5.63418 5.75668 5.84026 5.91826 6.03505 6.10521 6.17424 6.17734 6.21823 6.28903 6.47074 6.54609 6.56291 6.66281 6.82835 7.32579 7.42421 7.60764 7.84657 7.89572 8.13640 8.85386 9.47645 10.96552 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009735 B = 0.008528 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.594074 B = 3282.475728 C = 4980.922167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.143 4.143 3 C 0.168 3.832 4 H 0.105 0.895 5 C -0.088 4.088 6 H 0.120 0.880 7 C 0.487 3.513 8 O -0.500 6.500 9 O -0.517 6.517 10 C -0.115 4.115 11 C 0.123 3.877 12 N -1.010 6.010 13 S 2.800 3.200 14 O -0.999 6.999 15 O -0.967 6.967 16 N -0.996 5.996 17 C 0.100 3.900 18 C 0.246 3.754 19 C -0.536 4.536 20 H 0.061 0.939 21 C 0.065 3.935 22 N -0.888 5.888 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.409 0.591 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.335 -10.295 -3.166 14.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.182 4.182 3 C 0.061 3.939 4 H 0.123 0.877 5 C -0.109 4.109 6 H 0.138 0.862 7 C 0.328 3.672 8 O -0.386 6.386 9 O -0.329 6.329 10 C -0.154 4.154 11 C -0.003 4.003 12 N -0.848 5.848 13 S 2.810 3.190 14 O -0.983 6.983 15 O -0.951 6.951 16 N -0.838 5.838 17 C -0.046 4.046 18 C 0.124 3.876 19 C -0.576 4.576 20 H 0.080 0.920 21 C -0.138 4.138 22 N -0.527 5.527 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.200 1.200 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.268 0.732 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.097 -10.826 -3.384 14.540 hybrid contribution 1.337 1.063 1.186 2.080 sum 10.434 -9.762 -2.198 14.457 Atomic orbital electron populations 1.22250 0.93969 1.01951 1.03219 1.22128 0.97809 0.95782 1.02511 1.21298 0.91665 0.93732 0.87205 0.87713 1.22056 0.97498 1.02417 0.88917 0.86173 1.23110 0.79926 0.72689 0.91500 1.90774 1.50661 1.45305 1.51896 1.84507 1.28640 1.83563 1.36189 1.22782 0.99371 0.98040 0.95232 1.21903 0.83245 1.00366 0.94797 1.59134 1.22068 1.73933 1.29669 1.01451 0.72390 0.72438 0.72673 1.93550 1.86499 1.71570 1.46635 1.93669 1.61105 1.84816 1.55548 1.57587 1.83085 1.26308 1.16804 1.21304 1.00178 1.01178 0.81975 1.19216 0.96207 0.87052 0.85129 1.21496 0.93007 1.22595 1.20489 0.92044 1.24934 0.95995 0.96508 0.96377 1.69925 1.22488 1.30934 1.29319 0.86594 0.83286 0.79410 0.78642 1.20636 1.21117 1.19979 0.89506 0.93710 0.93104 0.91379 0.90547 0.73246 0.89299 0.89088 0.90042 0.91407 0.93544 0.90883 0.92459 0.94385 0.93075 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 8.02 37.16 0.30 -2.31 16 2 C -0.14 -2.05 5.45 -26.73 -0.15 -2.20 16 3 C 0.17 2.71 2.44 -66.79 -0.16 2.54 16 4 H 0.11 2.04 6.73 -51.93 -0.35 1.69 16 5 C -0.09 -1.12 2.97 -89.93 -0.27 -1.39 16 6 H 0.12 1.15 7.85 -51.93 -0.41 0.74 16 7 C 0.49 6.72 7.63 36.00 0.27 7.00 16 8 O -0.50 -8.79 16.19 -18.75 -0.30 -9.09 16 9 O -0.52 -5.42 13.42 -39.26 -0.53 -5.95 16 10 C -0.12 -1.44 6.52 -24.58 -0.16 -1.60 16 11 C 0.12 1.68 7.31 -2.53 -0.02 1.66 16 12 N -1.01 -17.33 3.45 -104.20 -0.36 -17.68 16 13 S 2.80 56.59 4.65 -107.50 -0.50 56.09 16 14 O -1.00 -20.75 16.89 -57.17 -0.97 -21.72 16 15 O -0.97 -21.89 11.82 -57.17 -0.68 -22.56 16 16 N -1.00 -20.69 3.23 -123.06 -0.40 -21.09 16 17 C 0.10 1.71 10.39 59.85 0.62 2.34 16 18 C 0.25 6.12 5.44 -5.20 -0.03 6.09 16 19 C -0.54 -13.91 9.38 -34.44 -0.32 -14.23 16 20 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 21 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 23 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H 0.09 1.63 6.89 -51.93 -0.36 1.27 16 28 H 0.04 0.82 5.05 -49.08 -0.25 0.57 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.41 2.70 9.10 45.56 0.41 3.11 16 33 H 0.09 1.33 8.04 -51.93 -0.42 0.91 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.21 8.11 -51.93 -0.42 0.78 16 39 H 0.06 0.86 7.47 -51.93 -0.39 0.47 16 40 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 41 H 0.05 1.41 6.98 -51.93 -0.36 1.05 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -33.92 352.28 -8.18 -42.10 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.46 Total: 4.05 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.01 Total: -0.43 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -0.02 Total: -63.59 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -2.47 Total: -59.32 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 56.59 SS G_CDS: -0.50 Total: 56.09 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.92 -8.18 -42.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554412618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.780 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds