Wall clock time and date at job start Fri Apr 10 2020 14:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46883 * 2 1 4 4 H 1.09005 * 109.99587 * 52.52026 * 3 2 1 5 5 C 1.54329 * 109.88096 * 173.61256 * 3 2 1 6 6 H 1.08995 * 110.71895 * 23.07321 * 5 3 2 7 7 C 1.50697 * 110.72180 * 259.97510 * 5 3 2 8 8 O 1.20830 * 119.99943 * 2.44174 * 7 5 3 9 9 O 1.34231 * 119.99884 * 182.44570 * 7 5 3 10 10 C 1.55164 * 103.09700 * 141.52602 * 5 3 2 11 11 C 1.54908 * 101.58133 * 324.58374 * 10 5 3 12 12 N 1.47312 * 110.06699 * 291.35043 * 3 2 1 13 13 S 1.65600 * 125.61803 * 61.67873 * 12 3 2 14 14 O 1.42097 * 106.40370 * 241.18305 * 13 12 3 15 15 O 1.42098 * 106.40053 * 14.10132 * 13 12 3 16 16 N 1.65597 * 107.21903 * 127.64354 * 13 12 3 17 17 C 1.46498 * 120.00097 * 95.01460 * 16 13 12 18 18 C 1.46499 * 119.99851 * 275.01464 * 16 13 12 19 19 C 1.50697 * 109.47044 * 94.99897 * 18 16 13 20 20 H 1.07999 * 120.00408 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00050 * 179.97438 * 19 18 16 22 22 N 1.31517 * 120.00033 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00221 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46996 * 90.00265 * 23 21 19 25 25 H 1.48499 * 109.47309 * 210.00205 * 23 21 19 26 26 H 1.48501 * 109.46814 * 330.00385 * 23 21 19 27 27 H 1.08993 * 109.47381 * 315.08091 * 1 2 3 28 28 H 1.09007 * 109.46519 * 75.08505 * 1 2 3 29 29 H 1.09001 * 109.46741 * 195.07994 * 1 2 3 30 30 H 1.08993 * 109.47583 * 240.00688 * 2 1 3 31 31 H 1.08998 * 109.47329 * 119.99560 * 2 1 3 32 32 H 0.96704 * 116.99493 * 180.02562 * 9 7 5 33 33 H 1.08994 * 111.00575 * 82.66433 * 10 5 3 34 34 H 1.09002 * 111.00181 * 206.51730 * 10 5 3 35 35 H 1.09005 * 110.36563 * 155.84546 * 11 10 5 36 36 H 1.08995 * 110.37199 * 278.06202 * 11 10 5 37 37 H 1.09003 * 109.47025 * 94.96828 * 17 16 13 38 38 H 1.09001 * 109.47119 * 214.96381 * 17 16 13 39 39 H 1.08995 * 109.46908 * 334.96735 * 17 16 13 40 40 H 1.09001 * 109.47330 * 215.00055 * 18 16 13 41 41 H 1.09001 * 109.47594 * 334.99887 * 18 16 13 42 42 H 0.96997 * 120.00075 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5765 2.0018 0.8129 5 6 3.5747 1.4567 0.1615 6 1 4.0050 0.5082 -0.1598 7 6 3.9581 1.7582 1.5873 8 8 3.1003 1.9044 2.4256 9 8 5.2526 1.8644 1.9261 10 6 4.0168 2.6073 -0.7809 11 6 2.9998 2.4675 -1.9409 12 7 1.7335 2.0870 -1.2887 13 16 0.2170 2.3378 -1.9051 14 8 0.1570 1.6177 -3.1286 15 8 -0.6917 2.1262 -0.8334 16 7 0.1079 3.9421 -2.3009 17 6 0.3848 4.3789 -3.6716 18 6 -0.2655 4.9246 -1.2803 19 6 0.9802 5.5266 -0.6830 20 1 1.9528 5.2095 -1.0293 21 6 0.8783 6.4831 0.3048 22 7 -0.3061 6.8697 0.7261 23 14 2.4224 7.2299 1.0447 24 1 2.8126 8.4326 0.2660 25 1 2.1588 7.6168 2.4540 26 1 3.5231 6.2340 1.0023 27 1 -0.3634 0.7276 0.7256 28 1 -0.3632 0.2645 -0.9931 29 1 -0.3633 -0.9923 0.2674 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 5.4493 2.0585 2.8528 33 1 3.9180 3.5750 -0.2891 34 1 5.0363 2.4528 -1.1345 35 1 2.8869 3.4176 -2.4632 36 1 3.3198 1.6899 -2.6345 37 1 -0.5504 4.4451 -4.2277 38 1 0.8654 5.3570 -3.6511 39 1 1.0452 3.6595 -4.1557 40 1 -0.8668 5.7113 -1.7361 41 1 -0.8432 4.4334 -0.4972 42 1 -0.3778 7.5423 1.4213 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554412618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:13 Heat of formation + Delta-G solvation = -181.799048 kcal Electronic energy + Delta-G solvation = -27845.378978 eV Core-core repulsion = 23951.616232 eV Total energy + Delta-G solvation = -3893.762746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.63408 -39.46140 -38.31324 -37.29753 -37.07329 -37.03460 -34.53468 -34.09261 -32.40246 -29.69989 -29.26658 -26.79595 -25.71502 -24.27856 -23.63430 -22.39477 -21.36150 -19.85683 -19.17690 -18.80118 -18.72323 -18.40717 -17.55918 -17.23211 -16.61924 -16.45674 -16.13682 -15.46405 -15.25164 -15.01898 -14.77965 -14.57232 -14.28089 -14.03254 -13.98539 -13.87303 -13.64953 -13.45584 -13.20878 -13.09587 -12.99618 -12.92408 -12.65278 -12.53659 -12.43692 -12.42007 -12.13296 -11.99611 -11.80331 -11.74727 -11.69596 -11.55678 -11.41949 -10.60782 -9.98105 -9.78794 -8.19597 -6.32529 -0.35827 1.19202 1.37119 1.39360 1.47895 1.89672 2.07426 2.39001 2.55172 3.12710 3.20441 3.37040 3.68126 3.85857 4.01727 4.11830 4.14774 4.22281 4.35847 4.46870 4.61347 4.64643 4.67179 4.72874 4.75625 4.91607 4.95419 4.96872 5.03672 5.06247 5.16243 5.22955 5.32580 5.35406 5.45746 5.57947 5.63800 5.71858 5.89969 6.06888 6.78745 6.98766 7.37108 8.88992 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009735 B = 0.008528 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.594074 B = 3282.475728 C = 4980.922167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.138 4.138 3 C 0.159 3.841 4 H 0.058 0.942 5 C -0.081 4.081 6 H 0.166 0.834 7 C 0.491 3.509 8 O -0.549 6.549 9 O -0.502 6.502 10 C -0.108 4.108 11 C 0.110 3.890 12 N -1.013 6.013 13 S 2.809 3.191 14 O -1.004 7.004 15 O -1.002 7.002 16 N -1.004 6.004 17 C 0.092 3.908 18 C 0.262 3.738 19 C -0.534 4.534 20 H 0.075 0.925 21 C 0.008 3.992 22 N -0.930 5.930 23 Si 0.956 3.044 24 H -0.267 1.267 25 H -0.292 1.292 26 H -0.259 1.259 27 H 0.052 0.948 28 H 0.023 0.977 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.427 0.573 33 H 0.058 0.942 34 H 0.136 0.864 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.020 0.980 41 H 0.013 0.987 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.129 -11.610 -4.322 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.176 4.176 3 C 0.052 3.948 4 H 0.076 0.924 5 C -0.101 4.101 6 H 0.184 0.816 7 C 0.334 3.666 8 O -0.439 6.439 9 O -0.315 6.315 10 C -0.147 4.147 11 C -0.014 4.014 12 N -0.854 5.854 13 S 2.820 3.180 14 O -0.987 6.987 15 O -0.987 6.987 16 N -0.845 5.845 17 C -0.054 4.054 18 C 0.138 3.862 19 C -0.573 4.573 20 H 0.094 0.906 21 C -0.191 4.191 22 N -0.570 5.570 23 Si 0.781 3.219 24 H -0.192 1.192 25 H -0.219 1.219 26 H -0.183 1.183 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.288 0.712 33 H 0.077 0.923 34 H 0.154 0.846 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.038 0.962 41 H 0.031 0.969 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.930 -12.143 -4.580 18.320 hybrid contribution 0.157 1.427 1.535 2.102 sum 13.087 -10.716 -3.045 17.186 Atomic orbital electron populations 1.22212 0.96351 1.02242 1.00942 1.22138 0.95627 0.95052 1.04829 1.21340 0.94321 0.93943 0.85157 0.92411 1.22117 0.94722 1.04776 0.88491 0.81631 1.23326 0.80275 0.71454 0.91554 1.90779 1.52165 1.47653 1.53337 1.84455 1.26484 1.82732 1.37863 1.22798 1.01339 0.96316 0.94233 1.22313 0.81810 1.01514 0.95755 1.58883 1.22202 1.73945 1.30379 1.00947 0.72846 0.72035 0.72135 1.93535 1.87001 1.71386 1.46816 1.93639 1.63206 1.85216 1.56628 1.57504 1.83703 1.25777 1.17512 1.21560 1.01402 1.02205 0.80207 1.18722 0.95508 0.86860 0.85120 1.21805 0.93687 1.21852 1.19987 0.90644 1.25829 0.98957 0.97273 0.97051 1.70071 1.24864 1.31902 1.30199 0.85587 0.79874 0.79160 0.77310 1.19246 1.21867 1.18338 0.92890 0.95779 0.90619 0.88675 0.88295 0.71161 0.92316 0.84588 0.90470 0.87722 0.92619 0.90414 0.89854 0.96156 0.96876 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.40 8.02 71.98 0.58 -4.83 16 2 C -0.14 -3.69 5.45 30.60 0.17 -3.53 16 3 C 0.16 4.98 2.44 45.29 0.11 5.09 16 4 H 0.06 2.36 6.73 -2.38 -0.02 2.35 16 5 C -0.08 -1.78 2.97 -10.35 -0.03 -1.82 16 6 H 0.17 2.18 7.85 -2.39 -0.02 2.16 16 7 C 0.49 12.45 7.63 71.23 0.54 13.00 16 8 O -0.55 -19.24 16.19 21.95 0.36 -18.88 16 9 O -0.50 -8.76 13.42 -51.43 -0.69 -9.45 16 10 C -0.11 -2.27 6.52 31.99 0.21 -2.06 16 11 C 0.11 2.65 7.31 86.85 0.63 3.29 16 12 N -1.01 -33.59 3.45 -483.60 -1.67 -35.26 16 13 S 2.81 114.77 4.65 -56.49 -0.26 114.50 16 14 O -1.00 -40.81 16.89 -128.00 -2.16 -42.97 16 15 O -1.00 -48.01 11.82 -128.00 -1.51 -49.52 16 16 N -1.00 -42.34 3.23 -543.24 -1.75 -44.10 16 17 C 0.09 3.05 10.39 127.77 1.33 4.37 16 18 C 0.26 13.59 5.44 85.63 0.47 14.06 16 19 C -0.53 -28.15 9.38 25.60 0.24 -27.91 16 20 H 0.08 3.67 7.81 -2.91 -0.02 3.65 16 21 C 0.01 0.44 5.46 84.65 0.46 0.90 16 22 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 23 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 25 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 27 H 0.05 2.13 6.89 -2.39 -0.02 2.11 16 28 H 0.02 0.89 5.05 -4.19 -0.02 0.87 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 31 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.43 4.34 9.10 -74.05 -0.67 3.67 16 33 H 0.06 1.61 8.04 -2.39 -0.02 1.59 16 34 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.08 2.49 8.11 -2.39 -0.02 2.47 16 39 H 0.08 2.32 7.47 -2.39 -0.02 2.30 16 40 H 0.02 1.11 8.11 -2.39 -0.02 1.09 16 41 H 0.01 0.78 6.98 -2.39 -0.02 0.76 16 42 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -78.06 352.28 -0.32 -78.39 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.35 Total: 17.09 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 4.71 Total: 0.56 kcal Atomic # 7 Polarization: -131.36 SS G_CDS: -3.14 Total: -134.50 kcal Atomic # 8 Polarization: -116.82 SS G_CDS: -4.01 Total: -120.83 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 114.77 SS G_CDS: -0.26 Total: 114.50 kcal Total: -78.06 -0.32 -78.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554412618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.414 kcal (2) G-P(sol) polarization free energy of solvation -78.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds