Wall clock time and date at job start Fri Apr 10 2020 14:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46932 * 2 1 4 4 C 1.50699 * 109.47262 * 240.00009 * 2 1 3 5 5 H 1.07998 * 119.99913 * 239.99760 * 4 2 1 6 6 C 1.37875 * 119.99859 * 59.99951 * 4 2 1 7 7 N 1.31515 * 120.00366 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99823 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47137 * 60.00090 * 8 6 4 10 10 H 1.48498 * 109.47253 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47298 * 300.00028 * 8 6 4 12 12 C 1.52999 * 109.46776 * 119.99807 * 2 1 3 13 13 S 1.81394 * 109.47517 * 300.00152 * 12 2 1 14 14 O 1.42102 * 110.54544 * 291.62958 * 13 12 2 15 15 O 1.42101 * 110.54512 * 68.37501 * 13 12 2 16 16 N 1.65602 * 104.45270 * 180.02562 * 13 12 2 17 17 C 1.46493 * 119.99910 * 66.01017 * 16 13 12 18 18 C 1.50702 * 110.45755 * 296.10408 * 17 16 13 19 19 N 1.34772 * 119.99779 * 320.96713 * 18 17 16 20 20 O 1.21280 * 119.99956 * 140.96856 * 18 17 16 21 21 C 1.54514 * 110.51246 * 58.70991 * 17 16 13 22 22 C 1.54475 * 104.06205 * 118.64625 * 21 17 16 23 23 O 1.44424 * 104.80718 * 23.97644 * 22 21 17 24 24 C 1.44423 * 105.27336 * 319.49083 * 23 22 21 25 25 H 1.09006 * 109.46977 * 60.00198 * 1 2 3 26 26 H 1.09006 * 109.47207 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47330 * 299.99705 * 1 2 3 28 28 H 1.09002 * 109.47263 * 59.99720 * 3 2 1 29 29 H 1.08998 * 109.46891 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47344 * 300.00006 * 3 2 1 31 31 H 0.96993 * 120.00125 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47164 * 60.00629 * 12 2 1 33 33 H 1.09008 * 109.46868 * 180.02562 * 12 2 1 34 34 H 0.97005 * 119.99990 * 246.01190 * 16 13 12 35 35 H 0.96996 * 120.00392 * 354.67204 * 19 18 17 36 36 H 0.96998 * 119.99911 * 174.66875 * 19 18 17 37 37 H 1.09003 * 110.50968 * 237.28863 * 21 17 16 38 38 H 1.08996 * 110.51047 * 359.85749 * 21 17 16 39 39 H 1.08998 * 110.37212 * 142.81032 * 22 21 17 40 40 H 1.09004 * 110.37000 * 265.03619 * 22 21 17 41 41 H 1.09002 * 110.37358 * 281.67532 * 24 23 22 42 42 H 1.08997 * 110.37303 * 159.34274 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.8282 -2.5198 -4.0081 10 1 1.8280 -0.4192 -5.2204 11 1 3.8076 -1.1189 -4.0077 12 6 2.0399 -0.7212 1.2493 13 16 1.4352 0.1338 2.7304 14 8 2.0477 1.4101 2.8544 15 8 0.0279 -0.0183 2.8544 16 7 2.0540 -0.7400 3.9937 17 6 3.5010 -0.7782 4.2187 18 6 4.1971 -1.4420 3.0585 19 7 3.6399 -2.5148 2.4627 20 8 5.2587 -1.0109 2.6611 21 6 4.0529 0.6484 4.4368 22 6 4.6443 0.6080 5.8633 23 8 4.9391 -0.7857 6.1013 24 6 3.8243 -1.5117 5.5392 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 0.7096 1.1618 -3.4844 32 1 1.6766 -1.7489 1.2492 33 1 3.1300 -0.7208 1.2495 34 1 1.4582 -1.2266 4.5847 35 1 2.8313 -2.9069 2.8277 36 1 4.0474 -2.8948 1.6687 37 1 4.8309 0.8727 3.7070 38 1 3.2495 1.3823 4.3747 39 1 5.5565 1.2026 5.9128 40 1 3.9150 0.9722 6.5869 41 1 2.9685 -1.4745 6.2133 42 1 4.1065 -2.5455 5.3398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578642939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:19 Heat of formation + Delta-G solvation = -165.654846 kcal Electronic energy + Delta-G solvation = -27873.312647 eV Core-core repulsion = 23980.249966 eV Total energy + Delta-G solvation = -3893.062680 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.87164 -39.42147 -38.21771 -38.14015 -37.02413 -36.32544 -34.58908 -33.57549 -31.46177 -29.74421 -28.29723 -27.70871 -27.24979 -25.12638 -23.55982 -21.60006 -21.28970 -20.16453 -19.14138 -18.97738 -18.26738 -17.83516 -17.38338 -16.95318 -16.82461 -16.70726 -16.54875 -16.17947 -15.80846 -15.16930 -15.02648 -14.75626 -14.52842 -14.28840 -13.95472 -13.72839 -13.61082 -13.17708 -13.08285 -12.90105 -12.82476 -12.60072 -12.55269 -12.44645 -12.28226 -12.18253 -12.05919 -11.89140 -11.72473 -11.57884 -11.37732 -10.87748 -10.75313 -10.59725 -10.41979 -10.40933 -8.03147 -6.20883 -0.76365 1.17125 1.44044 1.46088 1.51838 1.71868 2.24319 2.43541 2.70224 2.86162 3.15326 3.21006 3.32363 3.61858 3.72941 3.88076 4.01295 4.08482 4.21546 4.27797 4.53271 4.57441 4.62016 4.80977 4.82183 4.84060 4.93852 4.96398 5.06052 5.16414 5.36961 5.49472 5.64336 5.66920 5.77150 5.96213 5.96668 6.10791 6.26496 6.33695 6.83114 7.13584 7.47154 8.96567 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.005012 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.273600 B = 5584.717567 C = 6192.896138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.074 3.926 3 C -0.160 4.160 4 C -0.513 4.513 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.907 5.907 8 Si 0.952 3.048 9 H -0.267 1.267 10 H -0.290 1.290 11 H -0.278 1.278 12 C -0.587 4.587 13 S 2.605 3.395 14 O -0.979 6.979 15 O -0.977 6.977 16 N -1.090 6.090 17 C 0.128 3.872 18 C 0.502 3.498 19 N -0.832 5.832 20 O -0.559 6.559 21 C -0.188 4.188 22 C 0.052 3.948 23 O -0.381 6.381 24 C 0.063 3.937 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.260 0.740 32 H 0.150 0.850 33 H 0.122 0.878 34 H 0.437 0.563 35 H 0.419 0.581 36 H 0.414 0.586 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.415 -7.945 16.895 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.072 3.928 3 C -0.218 4.218 4 C -0.552 4.552 5 H 0.083 0.917 6 C -0.181 4.181 7 N -0.546 5.546 8 Si 0.778 3.222 9 H -0.192 1.192 10 H -0.215 1.215 11 H -0.204 1.204 12 C -0.720 4.720 13 S 2.702 3.298 14 O -0.969 6.969 15 O -0.967 6.967 16 N -0.853 5.853 17 C 0.034 3.966 18 C 0.284 3.716 19 N -0.398 5.398 20 O -0.435 6.435 21 C -0.228 4.228 22 C -0.025 4.025 23 O -0.300 6.300 24 C -0.016 4.016 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.168 0.832 33 H 0.140 0.860 34 H 0.277 0.723 35 H 0.251 0.749 36 H 0.247 0.753 37 H 0.097 0.903 38 H 0.134 0.866 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.134 0.866 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.745 -6.657 16.755 18.237 hybrid contribution 0.026 -0.967 -1.730 1.982 sum 2.770 -7.624 15.025 17.075 Atomic orbital electron populations 1.22200 0.97330 1.00849 1.01301 1.17883 0.92462 0.91690 0.90813 1.22208 0.99183 0.98946 1.01414 1.21226 1.31435 1.12304 0.90218 0.91732 1.25641 0.95232 0.95660 1.01585 1.69926 1.37251 1.23623 1.23821 0.85713 0.78420 0.78998 0.79056 1.19237 1.21536 1.20364 1.30772 1.11652 1.13940 1.15600 1.05128 0.73658 0.75253 0.75724 1.93488 1.77919 1.40074 1.85405 1.93548 1.30302 1.86828 1.85995 1.55378 1.12158 1.70306 1.47498 1.21750 0.79984 0.97995 0.96841 1.20841 0.85466 0.81374 0.83963 1.43926 1.31799 1.31622 1.32421 1.90781 1.23390 1.64928 1.64445 1.23886 1.03730 0.95137 1.00017 1.23565 1.02060 0.83071 0.93773 1.89156 1.42854 1.18428 1.79521 1.23799 0.92042 0.96881 0.88864 0.91160 0.93461 0.94970 0.94716 0.95220 0.91060 0.93006 0.83197 0.85964 0.72309 0.74869 0.75257 0.90274 0.86643 0.87779 0.89306 0.86577 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.48 7.77 71.98 0.56 -6.92 16 2 C 0.07 3.42 0.52 -52.93 -0.03 3.39 16 3 C -0.16 -7.94 7.77 71.98 0.56 -7.38 16 4 C -0.51 -25.84 8.01 25.60 0.21 -25.63 16 5 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 6 C 0.02 0.95 5.15 84.65 0.44 1.39 16 7 N -0.91 -49.63 9.35 21.45 0.20 -49.43 16 8 Si 0.95 41.69 29.54 68.60 2.03 43.72 16 9 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 10 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 C -0.59 -20.69 3.16 71.98 0.23 -20.46 16 13 S 2.60 84.59 4.45 -56.49 -0.25 84.34 16 14 O -0.98 -37.66 12.24 -127.65 -1.56 -39.22 16 15 O -0.98 -35.56 15.70 -127.65 -2.00 -37.56 16 16 N -1.09 -21.93 4.97 -151.15 -0.75 -22.68 16 17 C 0.13 2.82 1.04 3.88 0.00 2.82 16 18 C 0.50 13.08 4.43 87.66 0.39 13.47 16 19 N -0.83 -15.27 6.12 -173.54 -1.06 -16.34 16 20 O -0.56 -19.86 16.31 -3.03 -0.05 -19.91 16 21 C -0.19 -5.00 5.53 31.61 0.17 -4.83 16 22 C 0.05 1.04 7.63 72.48 0.55 1.59 16 23 O -0.38 -8.14 11.65 -148.98 -1.74 -9.88 16 24 C 0.06 0.96 6.81 72.48 0.49 1.45 16 25 H 0.07 3.68 6.07 -2.38 -0.01 3.66 16 26 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.03 1.43 5.46 -2.39 -0.01 1.42 16 28 H 0.03 1.62 5.46 -2.39 -0.01 1.61 16 29 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 31 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 32 H 0.15 4.22 7.44 -2.39 -0.02 4.20 16 33 H 0.12 4.34 5.42 -2.39 -0.01 4.32 16 34 H 0.44 5.25 8.44 -96.74 -0.82 4.44 16 35 H 0.42 4.62 8.27 -92.71 -0.77 3.86 16 36 H 0.41 7.57 8.93 -92.71 -0.83 6.74 16 37 H 0.08 2.54 6.68 -2.39 -0.02 2.52 16 38 H 0.12 3.33 5.40 -2.39 -0.01 3.31 16 39 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.12 1.01 7.84 -2.39 -0.02 0.99 16 42 H 0.12 1.37 7.87 -2.39 -0.02 1.35 16 Total: -1.00 -74.01 327.44 -2.93 -76.94 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: -1.31 Total: 31.14 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 3.57 Total: -41.11 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -1.61 Total: -88.45 kcal Atomic # 8 Polarization: -101.22 SS G_CDS: -5.35 Total: -106.57 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 84.59 SS G_CDS: -0.25 Total: 84.34 kcal Total: -74.01 -2.93 -76.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578642939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.718 kcal (2) G-P(sol) polarization free energy of solvation -74.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds