Wall clock time and date at job start Fri Apr 10 2020 14:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 119.99982 * 2 1 4 4 C 1.53495 * 114.20341 * 299.99382 * 3 2 1 5 5 N 1.47066 * 87.98658 * 87.71675 * 4 3 2 6 6 C 1.34780 * 136.06263 * 206.86221 * 5 4 3 7 7 O 1.21510 * 119.99558 * 359.97438 * 6 5 4 8 8 O 1.34630 * 120.00318 * 180.02562 * 6 5 4 9 9 C 1.45202 * 116.99916 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47421 * 59.99637 * 9 8 6 11 11 C 1.53008 * 109.46804 * 179.97438 * 9 8 6 12 12 C 1.52998 * 109.46950 * 299.99195 * 9 8 6 13 13 C 1.47067 * 87.88528 * 27.11900 * 5 4 3 14 14 S 1.65602 * 120.00095 * 179.97438 * 2 1 3 15 15 O 1.42108 * 106.39937 * 23.54738 * 14 2 1 16 16 O 1.42104 * 106.40004 * 156.46302 * 14 2 1 17 17 C 1.76194 * 107.21912 * 270.00610 * 14 2 1 18 18 H 1.08001 * 120.00554 * 0.02562 * 17 14 2 19 19 C 1.37877 * 119.99792 * 179.97438 * 17 14 2 20 20 N 1.31519 * 120.00499 * 0.02562 * 19 17 14 21 21 Si 1.86808 * 120.00224 * 179.97438 * 19 17 14 22 22 H 1.48509 * 109.46603 * 60.00101 * 21 19 17 23 23 H 1.48496 * 109.47104 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46996 * 300.00187 * 21 19 17 25 25 H 1.09008 * 109.47013 * 90.00635 * 1 2 3 26 26 H 1.09002 * 109.47295 * 210.00313 * 1 2 3 27 27 H 1.08998 * 109.47662 * 330.00388 * 1 2 3 28 28 H 1.08999 * 113.28231 * 166.92909 * 3 2 1 29 29 H 1.09005 * 113.46950 * 332.94241 * 4 3 2 30 30 H 1.08998 * 113.47096 * 202.49885 * 4 3 2 31 31 H 1.09001 * 109.47173 * 59.99941 * 10 9 8 32 32 H 1.09006 * 109.46940 * 180.02562 * 10 9 8 33 33 H 1.09006 * 109.46778 * 299.99641 * 10 9 8 34 34 H 1.08998 * 109.47593 * 59.99624 * 11 9 8 35 35 H 1.09000 * 109.46397 * 179.97438 * 11 9 8 36 36 H 1.08996 * 109.46866 * 299.99118 * 11 9 8 37 37 H 1.09002 * 109.47068 * 59.99877 * 12 9 8 38 38 H 1.08992 * 109.47463 * 180.02562 * 12 9 8 39 39 H 1.09005 * 109.47649 * 300.00807 * 12 9 8 40 40 H 1.09007 * 113.46858 * 87.65629 * 13 5 4 41 41 H 1.08993 * 113.47208 * 218.09965 * 13 5 4 42 42 H 0.96993 * 120.00852 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.9060 2.1637 -1.2125 5 7 0.7772 2.7292 -0.4583 6 6 -0.4036 3.3029 -0.7634 7 8 -0.7284 3.4436 -1.9258 8 8 -1.2228 3.7211 0.2198 9 6 -2.4785 4.3292 -0.1825 10 6 -3.2942 3.3236 -0.9975 11 6 -3.2693 4.7373 1.0622 12 6 -2.1953 5.5671 -1.0359 13 6 1.5068 2.3993 0.7752 14 16 2.2930 -1.4341 0.0006 15 8 1.4113 -2.4067 -0.5436 16 8 3.5760 -1.1569 -0.5439 17 6 2.5537 -1.8852 1.6838 18 1 2.1865 -1.2499 2.4763 19 6 3.2255 -3.0498 1.9893 20 7 3.6723 -3.8238 1.0244 21 14 3.5025 -3.5277 3.7738 22 1 2.1915 -3.6807 4.4544 23 1 4.2444 -4.8128 3.8326 24 1 4.2923 -2.4693 4.4529 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 3.2575 1.1542 0.2264 29 1 1.6006 1.6077 -2.0990 30 1 2.6957 2.8861 -1.4187 31 1 -3.4960 2.4417 -0.3894 32 1 -4.2367 3.7804 -1.2998 33 1 -2.7310 3.0326 -1.8842 34 1 -2.6884 5.4536 1.6432 35 1 -4.2117 5.1942 0.7601 36 1 -3.4711 3.8552 1.6697 37 1 -1.6320 5.2761 -1.9225 38 1 -3.1378 6.0239 -1.3375 39 1 -1.6141 6.2836 -0.4553 40 1 2.1903 3.1845 1.0985 41 1 0.8621 2.0437 1.5789 42 1 4.1452 -4.6429 1.2392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:40 Heat of formation + Delta-G solvation = -119.327268 kcal Electronic energy + Delta-G solvation = -26538.182200 eV Core-core repulsion = 22647.128434 eV Total energy + Delta-G solvation = -3891.053766 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.92237 -39.53897 -36.58628 -35.34606 -34.22695 -34.02446 -33.74316 -33.06717 -29.29817 -27.56653 -27.49632 -26.20443 -26.09860 -25.58014 -22.45778 -20.61501 -19.35825 -18.66315 -17.93954 -17.27882 -16.68371 -16.59169 -16.07379 -15.48555 -15.19617 -14.79823 -14.56129 -14.39831 -14.07518 -13.91488 -13.49394 -13.24858 -13.16152 -12.65582 -12.31703 -12.21167 -12.05569 -12.03529 -12.00697 -11.82551 -11.71812 -11.54389 -11.31869 -11.23103 -11.20124 -10.96377 -10.65305 -10.46196 -10.41602 -10.35161 -10.22368 -9.94939 -9.27737 -8.99480 -8.71743 -8.32243 -6.73835 -5.37275 2.00822 2.13366 2.91780 3.05871 3.10794 3.15682 3.78461 4.00338 4.37605 4.49971 4.58158 4.60173 4.62234 4.76274 4.91025 5.19985 5.29851 5.37228 5.38538 5.45280 5.48886 5.52320 5.61182 5.64389 5.72473 5.75965 5.77571 5.80655 5.86330 5.99031 6.08664 6.15010 6.22229 6.27361 6.32847 6.48774 6.71237 7.28215 7.44132 7.76901 7.92010 8.38491 8.84499 10.19869 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.003579 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.514263 B = 7822.287890 C = 8186.585277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.992 5.992 3 C 0.127 3.873 4 C 0.111 3.889 5 N -0.630 5.630 6 C 0.680 3.320 7 O -0.571 6.571 8 O -0.362 6.362 9 C 0.135 3.865 10 C -0.184 4.184 11 C -0.140 4.140 12 C -0.182 4.182 13 C 0.090 3.910 14 S 2.713 3.287 15 O -0.998 6.998 16 O -1.000 7.000 17 C -1.021 5.021 18 H 0.103 0.897 19 C 0.133 3.867 20 N -0.845 5.845 21 Si 0.921 3.079 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.263 1.263 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.137 0.863 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.608 16.178 1.830 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.824 5.824 3 C 0.017 3.983 4 C -0.012 4.012 5 N -0.372 5.372 6 C 0.437 3.563 7 O -0.461 6.461 8 O -0.277 6.277 9 C 0.098 3.902 10 C -0.242 4.242 11 C -0.197 4.197 12 C -0.239 4.239 13 C -0.034 4.034 14 S 2.815 3.185 15 O -0.989 6.989 16 O -0.990 6.990 17 C -1.154 5.154 18 H 0.121 0.879 19 C -0.085 4.085 20 N -0.475 5.475 21 Si 0.745 3.255 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.188 1.188 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.155 0.845 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.688 15.725 0.551 17.974 hybrid contribution -0.092 -0.012 1.516 1.519 sum -8.780 15.713 2.067 18.118 Atomic orbital electron populations 1.21271 0.79861 1.02191 1.01026 1.57866 1.14297 1.20303 1.89983 1.21884 0.97558 0.84009 0.94817 1.23640 0.84967 0.94333 0.98296 1.48267 1.15027 1.61367 1.12543 1.17260 0.79888 0.76342 0.82843 1.90885 1.75019 1.61011 1.19227 1.86315 1.30613 1.73137 1.37620 1.22048 0.80018 0.92565 0.95528 1.22527 1.00440 0.99029 1.02155 1.21847 0.99220 1.02345 0.96263 1.22506 1.03031 0.96592 1.01806 1.23547 0.94108 0.96105 0.89668 1.00684 0.71733 0.69493 0.76639 1.93374 1.67259 1.57243 1.80996 1.93359 1.40724 1.83930 1.80999 1.30562 1.50349 1.17022 1.17500 0.87882 1.24752 0.90115 0.93346 1.00283 1.69881 1.30834 1.12799 1.33951 0.86197 0.79288 0.78305 0.81751 1.18872 1.20122 1.18781 0.93838 0.90847 0.92233 0.84531 0.89602 0.88487 0.91973 0.91314 0.89312 0.91598 0.90272 0.91374 0.89400 0.91289 0.92339 0.88485 0.89319 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.81 9.39 59.85 0.56 2.37 16 2 N -0.99 -19.15 3.43 -114.40 -0.39 -19.54 16 3 C 0.13 1.95 4.58 -67.81 -0.31 1.64 16 4 C 0.11 1.54 8.25 -8.51 -0.07 1.47 16 5 N -0.63 -9.04 2.42 -191.10 -0.46 -9.51 16 6 C 0.68 10.55 7.87 54.06 0.43 10.97 16 7 O -0.57 -9.94 12.66 -19.28 -0.24 -10.18 16 8 O -0.36 -5.01 9.91 -40.30 -0.40 -5.41 16 9 C 0.14 1.52 1.13 -90.62 -0.10 1.42 16 10 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 11 C -0.14 -1.16 8.85 37.16 0.33 -0.83 16 12 C -0.18 -1.92 8.37 37.16 0.31 -1.61 16 13 C 0.09 1.12 7.67 -8.51 -0.07 1.05 16 14 S 2.71 69.11 4.92 -107.50 -0.53 68.58 16 15 O -1.00 -28.62 17.09 -57.17 -0.98 -29.60 16 16 O -1.00 -27.37 16.88 -57.17 -0.96 -28.33 16 17 C -1.02 -26.87 9.75 30.60 0.30 -26.57 16 18 H 0.10 2.45 7.81 -52.49 -0.41 2.04 16 19 C 0.13 3.60 5.46 -17.82 -0.10 3.50 16 20 N -0.85 -24.23 13.19 55.43 0.73 -23.50 16 21 Si 0.92 19.88 29.54 -169.99 -5.02 14.86 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 25 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.07 1.33 7.79 -51.93 -0.40 0.92 16 27 H 0.06 0.92 5.38 -51.93 -0.28 0.64 16 28 H 0.14 2.00 7.49 -51.93 -0.39 1.61 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.24 5.88 -51.93 -0.31 0.93 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 1.15 5.88 -51.93 -0.31 0.85 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.09 1.10 7.26 -51.93 -0.38 0.73 16 42 H 0.29 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -35.19 356.42 -7.55 -42.75 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.26 Total: 2.86 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 1.59 Total: -8.36 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.12 Total: -52.54 kcal Atomic # 8 Polarization: -70.93 SS G_CDS: -2.59 Total: -73.52 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 69.11 SS G_CDS: -0.53 Total: 68.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.19 -7.55 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.580 kcal (2) G-P(sol) polarization free energy of solvation -35.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds