Wall clock time and date at job start Fri Apr 10 2020 14:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 119.99982 * 2 1 4 4 C 1.53495 * 114.20341 * 299.99382 * 3 2 1 5 5 N 1.47066 * 87.98658 * 87.71675 * 4 3 2 6 6 C 1.34780 * 136.06263 * 206.86221 * 5 4 3 7 7 O 1.21510 * 119.99558 * 359.97438 * 6 5 4 8 8 O 1.34630 * 120.00318 * 180.02562 * 6 5 4 9 9 C 1.45202 * 116.99916 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47421 * 59.99637 * 9 8 6 11 11 C 1.53008 * 109.46804 * 179.97438 * 9 8 6 12 12 C 1.52998 * 109.46950 * 299.99195 * 9 8 6 13 13 C 1.47067 * 87.88528 * 27.11900 * 5 4 3 14 14 S 1.65602 * 120.00095 * 179.97438 * 2 1 3 15 15 O 1.42108 * 106.39937 * 23.54738 * 14 2 1 16 16 O 1.42104 * 106.40004 * 156.46302 * 14 2 1 17 17 C 1.76194 * 107.21912 * 270.00610 * 14 2 1 18 18 H 1.08001 * 120.00554 * 0.02562 * 17 14 2 19 19 C 1.37877 * 119.99792 * 179.97438 * 17 14 2 20 20 N 1.31519 * 120.00499 * 0.02562 * 19 17 14 21 21 Si 1.86808 * 120.00224 * 179.97438 * 19 17 14 22 22 H 1.48509 * 109.46603 * 60.00101 * 21 19 17 23 23 H 1.48496 * 109.47104 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46996 * 300.00187 * 21 19 17 25 25 H 1.09008 * 109.47013 * 90.00635 * 1 2 3 26 26 H 1.09002 * 109.47295 * 210.00313 * 1 2 3 27 27 H 1.08998 * 109.47662 * 330.00388 * 1 2 3 28 28 H 1.08999 * 113.28231 * 166.92909 * 3 2 1 29 29 H 1.09005 * 113.46950 * 332.94241 * 4 3 2 30 30 H 1.08998 * 113.47096 * 202.49885 * 4 3 2 31 31 H 1.09001 * 109.47173 * 59.99941 * 10 9 8 32 32 H 1.09006 * 109.46940 * 180.02562 * 10 9 8 33 33 H 1.09006 * 109.46778 * 299.99641 * 10 9 8 34 34 H 1.08998 * 109.47593 * 59.99624 * 11 9 8 35 35 H 1.09000 * 109.46397 * 179.97438 * 11 9 8 36 36 H 1.08996 * 109.46866 * 299.99118 * 11 9 8 37 37 H 1.09002 * 109.47068 * 59.99877 * 12 9 8 38 38 H 1.08992 * 109.47463 * 180.02562 * 12 9 8 39 39 H 1.09005 * 109.47649 * 300.00807 * 12 9 8 40 40 H 1.09007 * 113.46858 * 87.65629 * 13 5 4 41 41 H 1.08993 * 113.47208 * 218.09965 * 13 5 4 42 42 H 0.96993 * 120.00852 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.9060 2.1637 -1.2125 5 7 0.7772 2.7292 -0.4583 6 6 -0.4036 3.3029 -0.7634 7 8 -0.7284 3.4436 -1.9258 8 8 -1.2228 3.7211 0.2198 9 6 -2.4785 4.3292 -0.1825 10 6 -3.2942 3.3236 -0.9975 11 6 -3.2693 4.7373 1.0622 12 6 -2.1953 5.5671 -1.0359 13 6 1.5068 2.3993 0.7752 14 16 2.2930 -1.4341 0.0006 15 8 1.4113 -2.4067 -0.5436 16 8 3.5760 -1.1569 -0.5439 17 6 2.5537 -1.8852 1.6838 18 1 2.1865 -1.2499 2.4763 19 6 3.2255 -3.0498 1.9893 20 7 3.6723 -3.8238 1.0244 21 14 3.5025 -3.5277 3.7738 22 1 2.1915 -3.6807 4.4544 23 1 4.2444 -4.8128 3.8326 24 1 4.2923 -2.4693 4.4529 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 3.2575 1.1542 0.2264 29 1 1.6006 1.6077 -2.0990 30 1 2.6957 2.8861 -1.4187 31 1 -3.4960 2.4417 -0.3894 32 1 -4.2367 3.7804 -1.2998 33 1 -2.7310 3.0326 -1.8842 34 1 -2.6884 5.4536 1.6432 35 1 -4.2117 5.1942 0.7601 36 1 -3.4711 3.8552 1.6697 37 1 -1.6320 5.2761 -1.9225 38 1 -3.1378 6.0239 -1.3375 39 1 -1.6141 6.2836 -0.4553 40 1 2.1903 3.1845 1.0985 41 1 0.8621 2.0437 1.5789 42 1 4.1452 -4.6429 1.2392 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:39 Heat of formation + Delta-G solvation = -145.593076 kcal Electronic energy + Delta-G solvation = -26539.321171 eV Core-core repulsion = 22647.128434 eV Total energy + Delta-G solvation = -3892.192737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.03140 -40.64045 -37.69784 -37.45239 -36.13955 -35.51397 -35.10339 -34.83701 -30.49864 -28.35349 -28.28000 -28.23764 -27.28623 -26.91584 -23.61064 -21.82800 -20.79180 -20.22933 -19.23939 -18.72524 -18.33200 -17.70377 -17.46833 -16.97675 -16.76038 -16.12854 -15.99478 -15.76570 -15.26018 -15.19236 -14.87246 -14.69854 -14.24132 -13.94267 -13.62277 -13.33031 -13.29798 -13.12302 -13.08068 -12.98360 -12.96078 -12.88206 -12.84781 -12.53473 -12.48983 -12.42133 -12.30220 -12.23169 -12.12985 -12.07860 -11.37878 -11.20470 -11.06578 -10.95451 -9.91869 -9.80244 -8.72192 -7.46527 0.23599 0.97178 1.37978 1.39761 1.52829 1.76803 2.22810 2.60772 2.73363 2.78674 3.34631 3.71468 3.78033 3.81186 3.81721 3.96364 4.03436 4.21213 4.24531 4.44593 4.49578 4.56001 4.61071 4.62402 4.63382 4.69588 4.73933 4.77773 4.82347 4.84126 4.89387 4.92007 5.14053 5.21263 5.29537 5.34586 5.35489 5.49863 5.85917 5.93680 6.65406 6.80808 7.25402 8.22994 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.003579 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.514263 B = 7822.287890 C = 8186.585277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.988 5.988 3 C 0.105 3.895 4 C 0.112 3.888 5 N -0.636 5.636 6 C 0.675 3.325 7 O -0.598 6.598 8 O -0.365 6.365 9 C 0.122 3.878 10 C -0.182 4.182 11 C -0.133 4.133 12 C -0.177 4.177 13 C 0.106 3.894 14 S 2.718 3.282 15 O -1.043 7.043 16 O -1.029 7.029 17 C -1.037 5.037 18 H 0.124 0.876 19 C 0.071 3.929 20 N -0.896 5.896 21 Si 0.989 3.011 22 H -0.253 1.253 23 H -0.268 1.268 24 H -0.245 1.245 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.144 0.856 29 H 0.063 0.937 30 H 0.135 0.865 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.140 0.860 41 H 0.092 0.908 42 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.169 18.289 4.400 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.824 5.824 3 C -0.003 4.003 4 C -0.011 4.011 5 N -0.378 5.378 6 C 0.432 3.568 7 O -0.490 6.490 8 O -0.279 6.279 9 C 0.086 3.914 10 C -0.239 4.239 11 C -0.190 4.190 12 C -0.234 4.234 13 C -0.018 4.018 14 S 2.821 3.179 15 O -1.033 7.033 16 O -1.019 7.019 17 C -1.170 5.170 18 H 0.142 0.858 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.808 3.192 22 H -0.177 1.177 23 H -0.192 1.192 24 H -0.168 1.168 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.161 0.839 29 H 0.082 0.918 30 H 0.153 0.847 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.158 0.842 41 H 0.110 0.890 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.246 17.855 3.118 20.347 hybrid contribution 0.022 -0.584 0.638 0.865 sum -9.225 17.270 3.756 19.937 Atomic orbital electron populations 1.21311 0.78862 1.02974 1.00835 1.57283 1.14688 1.20324 1.90069 1.22255 0.97859 0.83014 0.97195 1.23737 0.85878 0.94724 0.96761 1.48356 1.14930 1.61022 1.13487 1.17416 0.80183 0.76383 0.82806 1.90880 1.75609 1.62073 1.20417 1.86323 1.31343 1.73111 1.37165 1.22458 0.79256 0.92487 0.97180 1.22493 1.01181 0.99372 1.00843 1.21869 0.99798 1.02560 0.94802 1.22446 1.03926 0.96499 1.00515 1.23659 0.94019 0.95525 0.88561 1.00156 0.71090 0.70093 0.76578 1.93308 1.68103 1.60074 1.81836 1.93305 1.42357 1.84692 1.81558 1.30915 1.50201 1.17632 1.18284 0.85752 1.26015 0.89433 0.93196 1.05541 1.69987 1.32220 1.13774 1.36712 0.85170 0.79980 0.78755 0.75345 1.17652 1.19203 1.16812 0.94624 0.91652 0.89720 0.83894 0.91849 0.84723 0.92227 0.88847 0.92414 0.90982 0.87816 0.91463 0.92319 0.88954 0.91720 0.84219 0.88994 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.76 9.39 127.77 1.20 4.96 16 2 N -0.99 -38.19 3.43 -515.85 -1.77 -39.96 16 3 C 0.10 3.08 4.58 45.46 0.21 3.29 16 4 C 0.11 2.99 8.25 83.18 0.69 3.67 16 5 N -0.64 -17.23 2.42 -988.93 -2.39 -19.62 16 6 C 0.68 20.37 7.87 129.79 1.02 21.39 16 7 O -0.60 -21.00 12.66 19.81 0.25 -20.75 16 8 O -0.36 -9.52 9.91 -55.40 -0.55 -10.06 16 9 C 0.12 2.53 1.13 -10.79 -0.01 2.52 16 10 C -0.18 -3.93 8.37 71.98 0.60 -3.33 16 11 C -0.13 -1.82 8.85 71.98 0.64 -1.18 16 12 C -0.18 -3.44 8.37 71.98 0.60 -2.84 16 13 C 0.11 2.31 7.67 83.18 0.64 2.95 16 14 S 2.72 141.66 4.92 -56.49 -0.28 141.38 16 15 O -1.04 -62.16 17.09 -128.00 -2.19 -64.35 16 16 O -1.03 -57.86 16.88 -128.00 -2.16 -60.02 16 17 C -1.04 -54.44 9.75 67.73 0.66 -53.78 16 18 H 0.12 5.75 7.81 -2.91 -0.02 5.73 16 19 C 0.07 3.82 5.46 84.65 0.46 4.28 16 20 N -0.90 -52.32 13.19 21.45 0.28 -52.04 16 21 Si 0.99 39.58 29.54 68.60 2.03 41.60 16 22 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 23 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 24 H -0.24 -8.99 7.11 99.48 0.71 -8.28 16 25 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.06 2.40 7.79 -2.39 -0.02 2.38 16 27 H 0.08 2.55 5.38 -2.39 -0.01 2.54 16 28 H 0.14 4.02 7.49 -2.39 -0.02 4.01 16 29 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.06 1.63 5.88 -2.38 -0.01 1.62 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.52 5.88 -2.39 -0.01 1.51 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.15 8.14 -2.38 -0.02 1.14 16 40 H 0.14 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.09 2.00 7.26 -2.39 -0.02 1.98 16 42 H 0.30 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -79.14 356.42 0.95 -78.19 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 1.02 Total: 23.70 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 6.71 Total: -18.07 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -3.88 Total: -111.62 kcal Atomic # 8 Polarization: -150.54 SS G_CDS: -4.65 Total: -155.18 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.60 kcal Atomic # 16 Polarization: 141.66 SS G_CDS: -0.28 Total: 141.38 kcal Total: -79.14 0.95 -78.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.403 kcal (2) G-P(sol) polarization free energy of solvation -79.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds