Wall clock time and date at job start Fri Apr 10 2020 14:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 120.00069 * 2 1 4 4 O 1.21508 * 119.99954 * 180.02562 * 3 2 1 5 5 O 1.34635 * 119.99445 * 359.97438 * 3 2 1 6 6 C 1.45207 * 116.99419 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47028 * 60.00273 * 6 5 3 8 8 C 1.53001 * 109.46994 * 180.02562 * 6 5 3 9 9 C 1.52999 * 109.47297 * 299.99819 * 6 5 3 10 10 C 1.46498 * 119.99799 * 180.02562 * 2 1 3 11 11 H 1.08999 * 113.03935 * 153.56608 * 10 2 1 12 12 C 1.53947 * 113.77127 * 285.31409 * 10 2 1 13 13 C 1.53938 * 86.29081 * 90.69595 * 12 10 2 14 14 N 1.47583 * 86.23985 * 23.55364 * 13 12 10 15 15 S 1.65597 * 134.49453 * 155.42433 * 14 13 12 16 16 O 1.42096 * 106.40279 * 203.54029 * 15 14 13 17 17 O 1.42103 * 106.40325 * 336.46339 * 15 14 13 18 18 C 1.76202 * 107.21995 * 89.99908 * 15 14 13 19 19 H 1.08006 * 119.99597 * 0.02562 * 18 15 14 20 20 C 1.37872 * 120.00355 * 180.02562 * 18 15 14 21 21 N 1.31520 * 119.99755 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 120.00485 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46876 * 89.99601 * 22 20 18 24 24 H 1.48490 * 109.47343 * 209.99714 * 22 20 18 25 25 H 1.48500 * 109.46751 * 330.00343 * 22 20 18 26 26 H 1.09002 * 109.46866 * 275.09927 * 1 2 3 27 27 H 1.08997 * 109.47478 * 35.10294 * 1 2 3 28 28 H 1.09000 * 109.46911 * 155.10374 * 1 2 3 29 29 H 1.08997 * 109.47559 * 59.99918 * 7 6 5 30 30 H 1.09003 * 109.47074 * 179.97438 * 7 6 5 31 31 H 1.08998 * 109.47426 * 299.99593 * 7 6 5 32 32 H 1.08997 * 109.47295 * 59.99729 * 8 6 5 33 33 H 1.08998 * 109.47469 * 179.97438 * 8 6 5 34 34 H 1.09002 * 109.47353 * 300.00163 * 8 6 5 35 35 H 1.09006 * 109.46711 * 60.00264 * 9 6 5 36 36 H 1.08995 * 109.47399 * 179.97438 * 9 6 5 37 37 H 1.08998 * 109.46909 * 300.00783 * 9 6 5 38 38 H 1.09008 * 113.73782 * 336.35064 * 12 10 2 39 39 H 1.08999 * 113.74750 * 205.04299 * 12 10 2 40 40 H 1.08999 * 113.76965 * 137.91102 * 13 12 10 41 41 H 1.09000 * 113.77648 * 269.19744 * 13 12 10 42 42 H 0.97004 * 119.99742 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3540 1.1672 -0.0005 5 8 1.4656 2.3331 -0.0005 6 6 2.2565 3.5509 -0.0011 7 6 3.1391 3.5852 -1.2503 8 6 1.3245 4.7643 -0.0010 9 6 3.1391 3.5864 1.2482 10 6 2.1975 -1.2687 -0.0006 11 1 3.1886 -1.1889 -0.4471 12 6 2.1855 -1.9928 1.3579 13 6 0.9135 -2.7003 0.8568 14 7 1.4058 -2.4108 -0.5041 15 16 1.1670 -3.0927 -1.9941 16 8 2.2950 -2.7393 -2.7826 17 8 0.7720 -4.4377 -1.7613 18 6 -0.2205 -2.2856 -2.7208 19 1 -0.7326 -1.5019 -2.1821 20 6 -0.6526 -2.6544 -3.9771 21 7 -0.0288 -3.6083 -4.6333 22 14 -2.1240 -1.7992 -4.7473 23 1 -1.6612 -0.6211 -5.5238 24 1 -2.8275 -2.7433 -5.6521 25 1 -3.0529 -1.3533 -3.6779 26 1 -0.3633 0.0913 1.0236 27 1 -0.3634 0.8407 -0.5909 28 1 -0.3633 -0.9322 -0.4326 29 1 2.5103 3.5600 -2.1403 30 1 3.7324 4.4996 -1.2510 31 1 3.8031 2.7209 -1.2500 32 1 0.6960 4.7396 0.8892 33 1 1.9181 5.6784 -0.0009 34 1 0.6953 4.7392 -0.8907 35 1 3.8032 2.7219 1.2485 36 1 3.7331 4.5003 1.2475 37 1 2.5103 3.5618 2.1381 38 1 2.0139 -1.3306 2.2066 39 1 3.0317 -2.6638 1.5052 40 1 0.8793 -3.7634 1.0948 41 1 -0.0089 -2.1779 1.1106 42 1 -0.3326 -3.8675 -5.5173 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192966336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:38 Heat of formation + Delta-G solvation = -124.097061 kcal Electronic energy + Delta-G solvation = -26990.293740 eV Core-core repulsion = 23099.033140 eV Total energy + Delta-G solvation = -3891.260600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.81122 -39.28014 -36.73793 -35.27339 -34.66791 -34.02892 -33.44707 -33.10006 -28.12835 -27.50437 -27.38737 -27.23302 -26.13727 -25.08238 -22.37514 -20.53958 -19.31453 -18.75435 -17.77452 -17.46685 -16.61864 -16.38649 -16.17540 -15.55851 -15.06367 -14.85499 -14.51242 -14.29205 -13.95029 -13.76483 -13.41720 -13.22423 -12.69626 -12.64709 -12.54234 -12.34555 -12.20389 -12.10065 -11.92806 -11.87876 -11.47051 -11.32444 -11.26675 -11.24466 -11.07951 -10.80821 -10.63635 -10.37166 -10.32947 -10.28058 -10.20152 -9.92434 -9.29474 -9.14797 -8.68127 -8.47654 -6.74697 -5.37777 2.01314 2.26703 2.96917 3.03151 3.09967 3.14928 3.93017 3.97873 4.33053 4.56824 4.67769 4.67934 4.72555 4.86516 5.25497 5.30299 5.34192 5.38484 5.45318 5.48067 5.57404 5.61187 5.68915 5.71786 5.74829 5.83577 5.84357 5.89055 5.91696 5.95026 6.09265 6.15865 6.25741 6.35882 6.45774 6.64252 6.92078 7.14035 7.29126 7.58623 7.89706 8.47284 8.83665 10.19291 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.005016 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.917104 B = 5580.378565 C = 6672.548797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.590 5.590 3 C 0.660 3.340 4 O -0.568 6.568 5 O -0.360 6.360 6 C 0.134 3.866 7 C -0.185 4.185 8 C -0.140 4.140 9 C -0.182 4.182 10 C 0.388 3.612 11 H 0.124 0.876 12 C -0.152 4.152 13 C 0.116 3.884 14 N -1.031 6.031 15 S 2.719 3.281 16 O -0.994 6.994 17 O -0.995 6.995 18 C -1.021 5.021 19 H 0.103 0.897 20 C 0.134 3.866 21 N -0.845 5.845 22 Si 0.920 3.080 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.262 1.262 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 13.133 12.436 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.332 5.332 3 C 0.415 3.585 4 O -0.457 6.457 5 O -0.275 6.275 6 C 0.097 3.903 7 C -0.242 4.242 8 C -0.197 4.197 9 C -0.239 4.239 10 C 0.197 3.803 11 H 0.142 0.858 12 C -0.193 4.193 13 C -0.010 4.010 14 N -0.866 5.866 15 S 2.821 3.179 16 O -0.985 6.985 17 O -0.985 6.985 18 C -1.155 5.155 19 H 0.121 0.879 20 C -0.084 4.084 21 N -0.474 5.474 22 Si 0.743 3.257 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.186 1.186 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.623 12.257 11.697 17.020 hybrid contribution -1.477 0.919 -0.697 1.874 sum 0.146 13.176 11.000 17.165 Atomic orbital electron populations 1.21996 0.78647 1.04978 1.01658 1.47078 1.07751 1.03265 1.75102 1.17800 0.83837 0.80901 0.75988 1.90877 1.12132 1.86871 1.55826 1.86321 1.40857 1.13660 1.86663 1.22044 0.90875 0.80810 0.96525 1.22528 1.00773 1.04394 0.96542 1.21844 0.99554 0.94937 1.03336 1.22505 1.00619 1.04421 0.96349 1.21526 0.90844 0.74846 0.93100 0.85838 1.23939 0.99375 0.99419 0.96523 1.22723 0.96660 1.01449 0.80195 1.61635 1.61594 1.40175 1.23196 1.00474 0.75187 0.73087 0.69138 1.93380 1.54397 1.84751 1.65972 1.93372 1.84804 1.35984 1.84382 1.30646 1.36305 1.35598 1.12933 0.87897 1.24740 0.96554 0.92192 0.94933 1.69894 1.38518 1.24925 1.14080 0.86175 0.80610 0.79644 0.79235 1.19202 1.19899 1.18581 0.92566 0.90748 0.88949 0.92024 0.91371 0.89135 0.91606 0.90340 0.91444 0.89232 0.91379 0.92332 0.90413 0.87987 0.89577 0.90309 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 8.92 59.85 0.53 1.57 16 2 N -0.59 -9.79 3.08 -182.11 -0.56 -10.35 16 3 C 0.66 11.06 7.70 54.06 0.42 11.48 16 4 O -0.57 -10.23 11.52 -19.28 -0.22 -10.45 16 5 O -0.36 -5.32 8.80 -40.31 -0.35 -5.68 16 6 C 0.13 1.61 1.13 -90.62 -0.10 1.51 16 7 C -0.19 -2.31 8.37 37.16 0.31 -2.00 16 8 C -0.14 -1.25 8.85 37.16 0.33 -0.92 16 9 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 10 C 0.39 6.77 4.94 -125.73 -0.62 6.14 16 11 H 0.12 2.31 7.54 -51.93 -0.39 1.92 16 12 C -0.15 -1.99 8.09 -25.80 -0.21 -2.20 16 13 C 0.12 1.72 8.17 -2.98 -0.02 1.70 16 14 N -1.03 -20.59 2.92 -114.44 -0.33 -20.92 16 15 S 2.72 72.59 5.52 -107.50 -0.59 72.00 16 16 O -0.99 -29.75 17.99 -57.17 -1.03 -30.78 16 17 O -0.99 -28.98 17.99 -57.17 -1.03 -30.00 16 18 C -1.02 -27.65 9.52 30.60 0.29 -27.36 16 19 H 0.10 2.50 5.97 -52.48 -0.31 2.18 16 20 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 21 N -0.84 -24.81 13.19 55.43 0.73 -24.08 16 22 Si 0.92 20.40 29.54 -169.99 -5.02 15.38 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 26 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.07 1.08 7.55 -51.93 -0.39 0.69 16 28 H 0.09 1.52 3.94 -51.93 -0.20 1.32 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.37 5.88 -51.93 -0.31 1.07 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 1.19 5.88 -51.93 -0.31 0.88 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.01 6.41 -51.93 -0.33 0.68 16 42 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -35.93 352.41 -7.99 -43.92 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.03 Total: 3.80 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 1.14 Total: -8.14 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.16 Total: -55.36 kcal Atomic # 8 Polarization: -74.28 SS G_CDS: -2.63 Total: -76.91 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 72.59 SS G_CDS: -0.59 Total: 72.00 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.93 -7.99 -43.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192966336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.174 kcal (2) G-P(sol) polarization free energy of solvation -35.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds