Wall clock time and date at job start Fri Apr 10 2020 14:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.47428 * 125.65300 * 0.02733 * 8 6 5 10 10 C 1.54903 * 104.83097 * 204.08833 * 9 8 6 11 11 C 1.55155 * 101.58576 * 322.99284 * 10 9 8 12 12 H 1.09009 * 110.71577 * 277.13813 * 11 10 9 13 13 N 1.46492 * 110.72329 * 154.04517 * 11 10 9 14 14 S 1.65597 * 120.00314 * 144.99774 * 13 11 10 15 15 O 1.42101 * 106.40509 * 178.54112 * 14 13 11 16 16 O 1.42103 * 106.40232 * 311.45734 * 14 13 11 17 17 C 1.76201 * 107.21931 * 64.99876 * 14 13 11 18 18 H 1.07999 * 119.99707 * 359.97438 * 17 14 13 19 19 C 1.37873 * 119.99933 * 180.02562 * 17 14 13 20 20 N 1.31514 * 120.00595 * 359.97438 * 19 17 14 21 21 Si 1.86807 * 119.99818 * 180.02562 * 19 17 14 22 22 H 1.48505 * 109.46915 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47072 * 119.99783 * 21 19 17 24 24 H 1.48500 * 109.47049 * 239.99894 * 21 19 17 25 25 C 1.47028 * 125.64416 * 179.71386 * 8 6 5 26 26 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 27 27 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 28 28 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 31 31 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 32 32 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 33 33 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 34 34 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 35 35 H 1.08999 * 110.36455 * 322.93182 * 9 8 6 36 36 H 1.09001 * 110.36667 * 85.24925 * 9 8 6 37 37 H 1.09009 * 111.00376 * 81.06692 * 10 9 8 38 38 H 1.09000 * 111.00500 * 204.91466 * 10 9 8 39 39 H 0.97008 * 119.99960 * 325.00002 * 13 11 10 40 40 H 0.96992 * 120.00181 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.88211 * 298.39733 * 25 8 6 42 42 H 1.09005 * 109.88205 * 59.56613 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 2.9177 -2.1400 3.5010 10 6 3.5991 -3.3898 4.1119 11 6 2.4593 -4.4391 4.0267 12 1 1.7789 -4.3389 4.8724 13 7 3.0076 -5.7961 3.9631 14 16 2.2097 -7.0469 4.6986 15 8 2.9667 -8.2191 4.4298 16 8 1.8991 -6.6069 6.0136 17 6 0.6707 -7.2463 3.8641 18 1 0.4175 -6.6003 3.0365 19 6 -0.2108 -8.2263 4.2684 20 7 0.0972 -9.0127 5.2765 21 14 -1.8422 -8.4382 3.3832 22 1 -1.9469 -7.4364 2.2920 23 1 -1.9202 -9.8057 2.8096 24 1 -2.9564 -8.2404 4.3448 25 6 1.7439 -4.0693 2.7102 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 3.6667 -1.4578 3.0991 36 1 2.3077 -1.6360 4.2507 37 1 4.4583 -3.6971 3.5156 38 1 3.8882 -3.2103 5.1474 39 1 3.8382 -5.9619 3.4902 40 1 -0.5228 -9.7024 5.5607 41 1 0.6663 -4.1845 2.8265 42 1 2.1023 -4.7089 1.9035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192989067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:54 Heat of formation + Delta-G solvation = -171.576425 kcal Electronic energy + Delta-G solvation = -26069.076485 eV Core-core repulsion = 22175.757026 eV Total energy + Delta-G solvation = -3893.319459 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.79789 -38.79106 -36.59886 -35.25574 -34.37883 -34.00608 -33.57013 -33.05949 -30.19631 -28.05688 -27.59343 -27.52296 -26.12710 -23.91458 -21.80561 -20.77207 -19.47242 -19.02031 -17.94029 -17.72453 -16.66929 -16.48531 -16.19750 -15.59204 -15.12055 -15.01089 -14.66950 -14.41489 -14.00430 -13.81755 -13.39780 -13.30731 -13.03799 -12.70046 -12.60516 -12.28660 -12.15579 -12.05580 -12.03981 -11.97715 -11.66860 -11.51142 -11.36791 -11.25701 -11.22831 -10.80798 -10.57340 -10.45596 -10.37172 -10.34064 -10.23294 -10.02409 -9.26415 -9.15122 -8.69530 -8.61668 -6.71838 -5.34056 2.02211 2.29943 2.88452 3.06712 3.15684 3.24299 3.83943 4.06235 4.43131 4.54858 4.58637 4.62848 4.69092 4.73487 4.76556 5.09600 5.26250 5.29424 5.34994 5.35928 5.41157 5.49714 5.55615 5.59747 5.69723 5.76308 5.78255 5.87722 5.92056 6.00195 6.10180 6.14677 6.15779 6.27386 6.41718 6.49848 6.76213 7.31137 7.50800 7.77978 7.96162 8.36963 8.88595 10.22403 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.003688 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.996310 B = 7591.083843 C = 8718.716572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.665 3.335 7 O -0.566 6.566 8 N -0.601 5.601 9 C 0.104 3.896 10 C -0.139 4.139 11 C 0.151 3.849 12 H 0.114 0.886 13 N -1.123 6.123 14 S 2.711 3.289 15 O -1.004 7.004 16 O -1.004 7.004 17 C -1.020 5.020 18 H 0.104 0.896 19 C 0.135 3.865 20 N -0.845 5.845 21 Si 0.918 3.082 22 H -0.261 1.261 23 H -0.271 1.271 24 H -0.271 1.271 25 C 0.105 3.895 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.404 0.596 40 H 0.290 0.710 41 H 0.084 0.916 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.354 19.180 -8.071 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.420 3.580 7 O -0.455 6.455 8 N -0.343 5.343 9 C -0.019 4.019 10 C -0.179 4.179 11 C 0.041 3.959 12 H 0.132 0.868 13 N -0.875 5.875 14 S 2.811 3.189 15 O -0.994 6.994 16 O -0.994 6.994 17 C -1.154 5.154 18 H 0.123 0.877 19 C -0.083 4.083 20 N -0.475 5.475 21 Si 0.741 3.259 22 H -0.184 1.184 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.019 4.019 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.236 0.764 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.250 18.501 -7.468 20.399 hybrid contribution -1.001 -0.049 -1.220 1.579 sum 3.249 18.451 -8.688 20.652 Atomic orbital electron populations 1.22523 0.94032 1.05258 1.02322 1.22039 0.94397 0.91416 0.82270 1.21845 1.02147 0.92632 1.03007 1.22520 1.01469 1.03694 0.96414 1.86289 1.71657 1.23638 1.46234 1.17472 0.78919 0.80300 0.81282 1.90915 1.41270 1.70427 1.42859 1.47118 1.52996 1.12980 1.21167 1.22352 0.93616 0.96737 0.89176 1.23150 0.98168 0.94058 1.02521 1.21520 0.95164 0.82690 0.96524 0.86775 1.56080 1.37524 1.20099 1.73845 1.00581 0.74788 0.70235 0.73314 1.93385 1.73784 1.46171 1.86051 1.93367 1.85696 1.81664 1.38692 1.30587 1.25035 1.27828 1.31903 0.87741 1.24718 0.99358 0.91749 0.92505 1.69896 1.37636 1.16924 1.23013 0.86167 0.80609 0.79062 0.80014 1.18435 1.19610 1.19618 1.22701 1.01643 0.78810 0.98712 0.92187 0.91278 0.89228 0.91551 0.90265 0.91502 0.89253 0.91272 0.92250 0.90094 0.90745 0.89927 0.88766 0.76427 0.89915 0.89815 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.37 37.16 0.31 -1.65 16 2 C 0.14 1.44 1.13 -90.62 -0.10 1.34 16 3 C -0.14 -1.04 8.85 37.16 0.33 -0.71 16 4 C -0.18 -1.93 8.37 37.16 0.31 -1.62 16 5 O -0.36 -4.69 9.42 -40.32 -0.38 -5.07 16 6 C 0.67 10.14 7.93 54.05 0.43 10.57 16 7 O -0.57 -9.96 12.21 -19.28 -0.24 -10.19 16 8 N -0.60 -8.53 3.33 -176.29 -0.59 -9.11 16 9 C 0.10 1.13 6.92 -2.53 -0.02 1.12 16 10 C -0.14 -1.57 6.74 -24.59 -0.17 -1.74 16 11 C 0.15 2.34 3.60 -66.10 -0.24 2.11 16 12 H 0.11 1.87 7.58 -51.92 -0.39 1.47 16 13 N -1.12 -20.37 5.53 -3.33 -0.02 -20.39 16 14 S 2.71 68.40 5.00 -107.50 -0.54 67.86 16 15 O -1.00 -28.49 18.02 -57.17 -1.03 -29.52 16 16 O -1.00 -27.87 17.41 -57.17 -1.00 -28.86 16 17 C -1.02 -27.12 9.72 30.60 0.30 -26.82 16 18 H 0.10 2.55 7.71 -52.49 -0.40 2.15 16 19 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 20 N -0.84 -24.46 13.19 55.43 0.73 -23.73 16 21 Si 0.92 20.56 29.54 -169.99 -5.02 15.53 16 22 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 C 0.10 1.65 6.53 -3.06 -0.02 1.63 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 1.19 5.88 -51.93 -0.31 0.89 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.85 8.06 -51.92 -0.42 0.44 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.40 6.26 8.82 -34.47 -0.30 5.95 16 40 H 0.29 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.08 1.34 8.03 -51.93 -0.42 0.93 16 LS Contribution 358.33 15.07 5.40 5.40 Total: -1.00 -35.66 358.33 -7.97 -43.62 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.33 Total: 6.64 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 1.04 Total: -12.19 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.13 Total: -53.22 kcal Atomic # 8 Polarization: -71.01 SS G_CDS: -2.64 Total: -73.65 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 68.40 SS G_CDS: -0.54 Total: 67.86 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.66 -7.97 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192989067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.952 kcal (2) G-P(sol) polarization free energy of solvation -35.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds