Wall clock time and date at job start Fri Apr 10 2020 14:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.47428 * 125.65300 * 0.02733 * 8 6 5 10 10 C 1.54903 * 104.83097 * 204.08833 * 9 8 6 11 11 C 1.55155 * 101.58576 * 322.99284 * 10 9 8 12 12 H 1.09009 * 110.71577 * 277.13813 * 11 10 9 13 13 N 1.46492 * 110.72329 * 154.04517 * 11 10 9 14 14 S 1.65597 * 120.00314 * 144.99774 * 13 11 10 15 15 O 1.42101 * 106.40509 * 178.54112 * 14 13 11 16 16 O 1.42103 * 106.40232 * 311.45734 * 14 13 11 17 17 C 1.76201 * 107.21931 * 64.99876 * 14 13 11 18 18 H 1.07999 * 119.99707 * 359.97438 * 17 14 13 19 19 C 1.37873 * 119.99933 * 180.02562 * 17 14 13 20 20 N 1.31514 * 120.00595 * 359.97438 * 19 17 14 21 21 Si 1.86807 * 119.99818 * 180.02562 * 19 17 14 22 22 H 1.48505 * 109.46915 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47072 * 119.99783 * 21 19 17 24 24 H 1.48500 * 109.47049 * 239.99894 * 21 19 17 25 25 C 1.47028 * 125.64416 * 179.71386 * 8 6 5 26 26 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 27 27 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 28 28 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 31 31 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 32 32 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 33 33 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 34 34 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 35 35 H 1.08999 * 110.36455 * 322.93182 * 9 8 6 36 36 H 1.09001 * 110.36667 * 85.24925 * 9 8 6 37 37 H 1.09009 * 111.00376 * 81.06692 * 10 9 8 38 38 H 1.09000 * 111.00500 * 204.91466 * 10 9 8 39 39 H 0.97008 * 119.99960 * 325.00002 * 13 11 10 40 40 H 0.96992 * 120.00181 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.88211 * 298.39733 * 25 8 6 42 42 H 1.09005 * 109.88205 * 59.56613 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 2.9177 -2.1400 3.5010 10 6 3.5991 -3.3898 4.1119 11 6 2.4593 -4.4391 4.0267 12 1 1.7789 -4.3389 4.8724 13 7 3.0076 -5.7961 3.9631 14 16 2.2097 -7.0469 4.6986 15 8 2.9667 -8.2191 4.4298 16 8 1.8991 -6.6069 6.0136 17 6 0.6707 -7.2463 3.8641 18 1 0.4175 -6.6003 3.0365 19 6 -0.2108 -8.2263 4.2684 20 7 0.0972 -9.0127 5.2765 21 14 -1.8422 -8.4382 3.3832 22 1 -1.9469 -7.4364 2.2920 23 1 -1.9202 -9.8057 2.8096 24 1 -2.9564 -8.2404 4.3448 25 6 1.7439 -4.0693 2.7102 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 3.6667 -1.4578 3.0991 36 1 2.3077 -1.6360 4.2507 37 1 4.4583 -3.6971 3.5156 38 1 3.8882 -3.2103 5.1474 39 1 3.8382 -5.9619 3.4902 40 1 -0.5228 -9.7024 5.5607 41 1 0.6663 -4.1845 2.8265 42 1 2.1023 -4.7089 1.9035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192989067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:40:53 Heat of formation + Delta-G solvation = -199.877532 kcal Electronic energy + Delta-G solvation = -26070.303713 eV Core-core repulsion = 22175.757026 eV Total energy + Delta-G solvation = -3894.546687 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.86631 -39.88103 -37.72579 -37.36400 -36.13981 -35.56040 -35.16840 -34.63242 -31.30276 -29.33053 -28.35070 -28.26191 -28.20410 -25.00923 -22.79132 -21.95990 -21.06575 -20.38179 -19.53418 -19.05895 -18.21969 -17.73974 -17.52932 -17.03762 -16.78448 -16.18027 -16.03842 -15.82387 -15.30864 -15.27324 -14.67670 -14.43781 -14.10213 -14.02062 -13.68903 -13.42015 -13.31801 -13.26926 -13.04448 -13.03143 -12.90339 -12.83977 -12.80535 -12.50262 -12.45443 -12.42653 -12.32284 -12.24854 -12.15516 -11.77353 -11.37721 -11.26500 -11.11361 -11.00721 -10.35294 -9.80690 -8.76155 -7.47169 0.31329 1.02414 1.30864 1.33765 1.50091 1.73240 2.19660 2.57817 2.82993 2.99133 3.52403 3.53861 3.72868 3.78205 3.82007 3.97073 4.06686 4.16381 4.33837 4.42709 4.51966 4.62820 4.63113 4.63427 4.73918 4.78335 4.81246 4.85620 4.90755 5.00573 5.03791 5.11936 5.21001 5.26034 5.30331 5.35453 5.37144 5.46824 5.90923 6.34590 6.40400 6.80386 7.24333 8.20555 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.003688 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.996310 B = 7591.083843 C = 8718.716572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.123 3.877 3 C -0.132 4.132 4 C -0.180 4.180 5 O -0.359 6.359 6 C 0.661 3.339 7 O -0.597 6.597 8 N -0.602 5.602 9 C 0.104 3.896 10 C -0.126 4.126 11 C 0.142 3.858 12 H 0.104 0.896 13 N -1.106 6.106 14 S 2.723 3.277 15 O -1.042 7.042 16 O -1.036 7.036 17 C -1.039 5.039 18 H 0.117 0.883 19 C 0.077 3.923 20 N -0.891 5.891 21 Si 0.981 3.019 22 H -0.255 1.255 23 H -0.260 1.260 24 H -0.257 1.257 25 C 0.108 3.892 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.419 0.581 40 H 0.299 0.701 41 H 0.065 0.935 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.633 21.777 -9.084 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.087 3.913 3 C -0.189 4.189 4 C -0.238 4.238 5 O -0.273 6.273 6 C 0.416 3.584 7 O -0.488 6.488 8 N -0.344 5.344 9 C -0.017 4.017 10 C -0.166 4.166 11 C 0.032 3.968 12 H 0.122 0.878 13 N -0.863 5.863 14 S 2.823 3.177 15 O -1.032 7.032 16 O -1.025 7.025 17 C -1.173 5.173 18 H 0.135 0.865 19 C -0.137 4.137 20 N -0.522 5.522 21 Si 0.800 3.200 22 H -0.178 1.178 23 H -0.184 1.184 24 H -0.182 1.182 25 C -0.016 4.016 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.254 0.746 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.563 21.122 -8.469 23.209 hybrid contribution -1.042 -0.754 -0.956 1.602 sum 3.521 20.368 -9.425 22.718 Atomic orbital electron populations 1.22486 0.94325 1.03384 1.03671 1.22458 0.94443 0.92942 0.81467 1.21865 1.02542 0.90106 1.04399 1.22478 1.01734 1.02002 0.97547 1.86305 1.71451 1.22198 1.47375 1.17655 0.78638 0.80986 0.81096 1.90908 1.42596 1.71251 1.44043 1.47135 1.53215 1.12296 1.21724 1.22588 0.93854 0.96772 0.88511 1.23177 0.96841 0.92195 1.04352 1.21723 0.97047 0.82061 0.95920 0.87786 1.55372 1.37543 1.19955 1.73458 0.99857 0.74433 0.70395 0.72979 1.93324 1.74382 1.49008 1.86511 1.93319 1.86206 1.82276 1.40714 1.30977 1.25952 1.28038 1.32296 0.86468 1.25844 1.03395 0.91314 0.93127 1.69972 1.39473 1.18031 1.24759 0.85227 0.76087 0.79588 0.79106 1.17796 1.18389 1.18166 1.22466 1.00537 0.80132 0.98515 0.91854 0.88929 0.92604 0.90928 0.87946 0.91041 0.92576 0.88966 0.91721 0.87743 0.89292 0.88457 0.86580 0.74595 0.89109 0.91694 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.66 8.37 71.98 0.60 -3.06 16 2 C 0.12 2.39 1.13 -10.80 -0.01 2.38 16 3 C -0.13 -1.54 8.85 71.98 0.64 -0.90 16 4 C -0.18 -3.55 8.37 71.98 0.60 -2.95 16 5 O -0.36 -8.70 9.42 -55.49 -0.52 -9.22 16 6 C 0.66 19.81 7.93 129.79 1.03 20.84 16 7 O -0.60 -21.47 12.21 19.80 0.24 -21.23 16 8 N -0.60 -16.47 3.33 -942.07 -3.13 -19.60 16 9 C 0.10 1.98 6.92 86.85 0.60 2.58 16 10 C -0.13 -2.51 6.74 31.98 0.22 -2.29 16 11 C 0.14 4.29 3.60 46.18 0.17 4.45 16 12 H 0.10 3.39 7.58 -2.38 -0.02 3.38 16 13 N -1.11 -39.83 5.53 -164.45 -0.91 -40.74 16 14 S 2.72 140.02 5.00 -56.49 -0.28 139.74 16 15 O -1.04 -60.58 18.02 -128.00 -2.31 -62.88 16 16 O -1.04 -58.69 17.41 -128.00 -2.23 -60.92 16 17 C -1.04 -56.10 9.72 67.73 0.66 -55.44 16 18 H 0.12 5.80 7.71 -2.91 -0.02 5.78 16 19 C 0.08 4.23 5.46 84.65 0.46 4.69 16 20 N -0.89 -52.56 13.19 21.45 0.28 -52.28 16 21 Si 0.98 41.98 29.54 68.60 2.03 44.01 16 22 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 25 C 0.11 3.41 6.53 86.73 0.57 3.98 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.53 5.88 -2.39 -0.01 1.52 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.51 5.88 -2.39 -0.01 1.50 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.56 8.04 -2.39 -0.02 1.54 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.10 1.69 8.06 -2.38 -0.02 1.67 16 38 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.42 12.65 8.82 -96.74 -0.85 11.80 16 40 H 0.30 15.83 8.31 -92.71 -0.77 15.06 16 41 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.07 2.39 8.03 -2.38 -0.02 2.37 16 Total: -1.00 -79.62 358.33 -1.13 -80.75 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.18 Total: 28.10 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 5.53 Total: -25.72 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -3.76 Total: -112.62 kcal Atomic # 8 Polarization: -149.44 SS G_CDS: -4.82 Total: -154.25 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 140.02 SS G_CDS: -0.28 Total: 139.74 kcal Total: -79.62 -1.13 -80.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192989067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.131 kcal (2) G-P(sol) polarization free energy of solvation -79.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds