Wall clock time and date at job start Fri Apr 10 2020 14:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47211 * 2 1 4 4 C 1.50709 * 109.46747 * 119.99383 * 2 1 3 5 5 O 1.21281 * 119.99603 * 120.00313 * 4 2 1 6 6 N 1.34771 * 119.99954 * 299.99918 * 4 2 1 7 7 C 1.46501 * 119.99767 * 179.97438 * 6 4 2 8 8 H 1.08999 * 110.88699 * 31.12573 * 7 6 4 9 9 C 1.55126 * 111.19587 * 267.18979 * 7 6 4 10 10 N 1.47431 * 104.72247 * 279.19180 * 9 7 6 11 11 C 1.36942 * 125.64569 * 155.81018 * 10 9 7 12 12 H 1.07995 * 119.99736 * 4.88880 * 11 10 9 13 13 C 1.38813 * 119.99578 * 184.88085 * 11 10 9 14 14 N 1.31614 * 120.00026 * 352.61137 * 13 11 10 15 15 Si 1.86796 * 119.99792 * 172.89214 * 13 11 10 16 16 H 1.48496 * 109.47599 * 94.98566 * 15 13 11 17 17 H 1.48499 * 109.47185 * 214.98806 * 15 13 11 18 18 H 1.48507 * 109.47099 * 334.98650 * 15 13 11 19 19 C 1.47016 * 108.70308 * 335.55176 * 10 9 7 20 20 C 1.54329 * 107.27107 * 1.28756 * 19 10 9 21 21 H 1.09005 * 110.71756 * 263.65505 * 20 19 10 22 22 O 1.42897 * 110.72284 * 140.55851 * 20 19 10 23 23 S 1.81397 * 109.47527 * 239.99637 * 2 1 3 24 24 C 1.81395 * 101.92009 * 60.00043 * 23 2 1 25 25 O 1.42098 * 108.57916 * 174.49085 * 23 2 1 26 26 O 1.42099 * 108.57682 * 305.51248 * 23 2 1 27 27 H 1.09001 * 109.47509 * 300.00695 * 1 2 3 28 28 H 1.09002 * 109.47325 * 60.00390 * 1 2 3 29 29 H 1.09002 * 109.47615 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47471 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47144 * 299.99814 * 3 2 1 32 32 H 1.09001 * 109.47451 * 59.99270 * 3 2 1 33 33 H 0.96995 * 120.00591 * 0.02562 * 6 4 2 34 34 H 1.08994 * 110.49803 * 160.34624 * 9 7 6 35 35 H 1.09003 * 110.34234 * 37.95488 * 9 7 6 36 36 H 0.96999 * 120.00183 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.88708 * 120.70243 * 19 10 9 38 38 H 1.08994 * 109.88023 * 241.87095 * 19 10 9 39 39 H 0.96703 * 113.99686 * 61.44624 * 22 20 19 40 40 H 1.08997 * 109.47607 * 60.00326 * 24 23 2 41 41 H 1.09008 * 109.46872 * 180.02562 * 24 23 2 42 42 H 1.08999 * 109.47317 * 299.99746 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7295 -1.6964 1.1194 6 7 1.7066 -0.2497 2.4546 7 6 2.1944 -0.9406 3.6509 8 1 3.1645 -1.4015 3.4650 9 6 1.1678 -1.9913 4.1496 10 7 0.1740 -1.2123 4.9105 11 6 -1.1236 -1.5836 5.1420 12 1 -1.4730 -2.5539 4.8215 13 6 -1.9897 -0.7128 5.7889 14 7 -1.5314 0.4063 6.3083 15 14 -3.8044 -1.1332 5.9292 16 1 -4.0600 -1.7943 7.2341 17 1 -4.6092 0.1115 5.8388 18 1 -4.1866 -2.0510 4.8261 19 6 0.8085 0.0261 5.3849 20 6 2.2609 0.0258 4.8629 21 1 2.9440 -0.3520 5.6238 22 8 2.6480 1.3361 4.4442 23 16 2.1347 -0.8552 -1.4810 24 6 1.4230 0.1513 -2.8117 25 8 3.5496 -0.7331 -1.5282 26 8 1.5480 -2.1485 -1.5282 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.1487 0.5387 2.5436 34 1 1.6532 -2.7220 4.7964 35 1 0.6932 -2.4885 3.3036 36 1 -2.1367 1.0150 6.7600 37 1 0.2737 0.8908 4.9919 38 1 0.8062 0.0499 6.4745 39 1 2.6303 1.9960 5.1508 40 1 1.7894 1.1745 -2.7292 41 1 1.7154 -0.2629 -3.7767 42 1 0.3361 0.1468 -2.7292 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220457282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:06 Heat of formation + Delta-G solvation = -119.562222 kcal Electronic energy + Delta-G solvation = -26977.276724 eV Core-core repulsion = 23086.212770 eV Total energy + Delta-G solvation = -3891.063954 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.09665 -38.05845 -37.02379 -36.00523 -35.30900 -35.14300 -33.68961 -31.62380 -29.72784 -28.50273 -27.71259 -27.18431 -24.65361 -23.87109 -21.19041 -20.46394 -19.81495 -18.70823 -17.76887 -16.97075 -16.90865 -16.56597 -15.94081 -15.87884 -15.46310 -15.00677 -14.75076 -14.39947 -14.06763 -13.64485 -13.59486 -13.33913 -13.17988 -13.15368 -12.71702 -12.50499 -12.40787 -12.37518 -12.06640 -12.03690 -11.98361 -11.62881 -11.52136 -11.32020 -11.10010 -10.94440 -10.80194 -10.52820 -10.32975 -10.15535 -9.93066 -9.75891 -9.38332 -8.87196 -8.61133 -6.97557 -5.85968 -3.18162 -0.17637 2.60794 2.62546 3.07724 3.32114 3.38909 3.40394 3.78214 3.86382 4.30326 4.32729 4.38397 4.51589 4.54637 4.68581 4.83181 5.12170 5.15056 5.21881 5.31571 5.33814 5.41269 5.43830 5.45743 5.57458 5.74330 5.81056 5.93576 6.03532 6.17293 6.33557 6.55157 6.84682 7.22083 7.36447 7.64921 7.68013 7.98788 8.09070 8.30593 9.07430 9.67595 10.31570 11.26254 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.004295 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.999422 B = 6517.396604 C = 7224.689170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.574 4.574 3 C -0.138 4.138 4 C 0.549 3.451 5 O -0.542 6.542 6 N -0.672 5.672 7 C 0.137 3.863 8 H 0.097 0.903 9 C 0.122 3.878 10 N -0.600 5.600 11 C -0.227 4.227 12 H 0.080 0.920 13 C -0.006 4.006 14 N -0.923 5.923 15 Si 0.910 3.090 16 H -0.289 1.289 17 H -0.290 1.290 18 H -0.280 1.280 19 C 0.148 3.852 20 C 0.065 3.935 21 H 0.069 0.931 22 O -0.564 6.564 23 S 2.454 3.546 24 C -0.666 4.666 25 O -0.924 6.924 26 O -0.921 6.921 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.410 0.590 34 H 0.035 0.965 35 H 0.053 0.947 36 H 0.252 0.748 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.378 0.622 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.604 6.205 -13.288 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.664 4.664 3 C -0.196 4.196 4 C 0.332 3.668 5 O -0.421 6.421 6 N -0.320 5.320 7 C 0.031 3.969 8 H 0.115 0.885 9 C -0.005 4.005 10 N -0.328 5.328 11 C -0.355 4.355 12 H 0.098 0.902 13 C -0.202 4.202 14 N -0.570 5.570 15 Si 0.741 3.259 16 H -0.216 1.216 17 H -0.216 1.216 18 H -0.206 1.206 19 C 0.023 3.977 20 C 0.005 3.995 21 H 0.087 0.913 22 O -0.369 6.369 23 S 2.631 3.369 24 C -0.815 4.815 25 O -0.921 6.921 26 O -0.918 6.918 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.246 0.754 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.225 0.775 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.493 4.563 -13.847 15.960 hybrid contribution -1.958 1.269 0.981 2.531 sum 4.535 5.832 -12.866 14.836 Atomic orbital electron populations 1.21820 0.87519 1.05261 1.05237 1.30451 1.08453 1.10610 1.16863 1.21796 1.02935 0.89718 1.05158 1.18959 0.80187 0.83756 0.83903 1.90815 1.38857 1.26105 1.86303 1.45272 1.51578 1.31285 1.03902 1.22339 0.98242 0.93218 0.83064 0.88459 1.22080 0.90348 0.93008 0.95093 1.44333 1.08051 1.19424 1.60969 1.19077 0.83985 0.99868 1.32588 0.90240 1.24785 0.98275 0.96756 1.00356 1.69933 1.33439 1.12199 1.41454 0.86121 0.84835 0.77112 0.77860 1.21623 1.21643 1.20564 1.21887 0.86748 0.90896 0.98175 1.23562 0.98351 0.82696 0.94909 0.91326 1.86390 1.90804 1.19245 1.40423 1.07379 0.75962 0.76371 0.77200 1.30464 1.14464 1.16918 1.19657 1.93560 1.26652 1.86592 1.85285 1.93575 1.79344 1.33695 1.85176 0.89181 0.90396 0.89685 0.89916 0.90413 0.89338 0.75425 0.94735 0.92901 0.93724 0.92345 0.93597 0.77475 0.85066 0.85047 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.12 37.15 0.30 -1.15 16 2 C -0.57 -7.02 0.72 -91.77 -0.07 -7.08 16 3 C -0.14 -1.25 8.12 37.16 0.30 -0.95 16 4 C 0.55 9.30 6.50 -10.98 -0.07 9.23 16 5 O -0.54 -11.14 15.26 2.55 0.04 -11.10 16 6 N -0.67 -11.31 4.60 -51.61 -0.24 -11.55 16 7 C 0.14 2.49 3.31 -65.66 -0.22 2.27 16 8 H 0.10 1.75 7.54 -51.93 -0.39 1.36 16 9 C 0.12 2.51 6.95 -2.41 -0.02 2.50 16 10 N -0.60 -14.31 3.39 -169.93 -0.58 -14.88 16 11 C -0.23 -6.03 10.27 -15.06 -0.15 -6.19 16 12 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 13 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 14 N -0.92 -25.31 10.36 55.49 0.58 -24.74 16 15 Si 0.91 21.23 29.56 -169.99 -5.02 16.21 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 C 0.15 3.22 5.14 -3.06 -0.02 3.21 16 20 C 0.06 1.12 4.12 -24.89 -0.10 1.02 16 21 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 22 O -0.56 -8.51 12.67 -35.23 -0.45 -8.95 16 23 S 2.45 31.39 3.65 -107.50 -0.39 31.00 16 24 C -0.67 -4.37 9.72 101.05 0.98 -3.39 16 25 O -0.92 -14.84 17.76 -59.53 -1.06 -15.90 16 26 O -0.92 -15.33 17.76 -59.53 -1.06 -16.39 16 27 H 0.09 0.98 7.56 -51.93 -0.39 0.59 16 28 H 0.08 0.48 6.56 -51.93 -0.34 0.14 16 29 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 30 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 31 H 0.08 0.40 6.56 -51.93 -0.34 0.06 16 32 H 0.09 0.79 7.56 -51.93 -0.39 0.40 16 33 H 0.41 6.55 7.23 -40.82 -0.29 6.25 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.25 6.78 8.31 -40.82 -0.34 6.45 16 37 H 0.06 1.39 7.22 -51.93 -0.38 1.02 16 38 H 0.05 1.11 7.60 -51.93 -0.39 0.72 16 39 H 0.38 4.35 9.11 45.56 0.42 4.77 16 40 H 0.13 0.55 6.87 -51.93 -0.36 0.19 16 41 H 0.13 0.72 8.14 -51.92 -0.42 0.29 16 42 H 0.13 0.60 6.87 -51.92 -0.36 0.24 16 LS Contribution 350.28 15.07 5.28 5.28 Total: -1.00 -36.52 350.28 -7.35 -43.87 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.30 Total: 7.94 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 0.85 Total: -0.78 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.24 Total: -51.17 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -2.52 Total: -52.34 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 31.39 SS G_CDS: -0.39 Total: 31.00 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.52 -7.35 -43.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220457282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.695 kcal (2) G-P(sol) polarization free energy of solvation -36.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds