Wall clock time and date at job start Fri Apr 10 2020 14:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47211 * 2 1 4 4 C 1.50709 * 109.46747 * 119.99383 * 2 1 3 5 5 O 1.21281 * 119.99603 * 120.00313 * 4 2 1 6 6 N 1.34771 * 119.99954 * 299.99918 * 4 2 1 7 7 C 1.46501 * 119.99767 * 179.97438 * 6 4 2 8 8 H 1.08999 * 110.88699 * 31.12573 * 7 6 4 9 9 C 1.55126 * 111.19587 * 267.18979 * 7 6 4 10 10 N 1.47431 * 104.72247 * 279.19180 * 9 7 6 11 11 C 1.36942 * 125.64569 * 155.81018 * 10 9 7 12 12 H 1.07995 * 119.99736 * 4.88880 * 11 10 9 13 13 C 1.38813 * 119.99578 * 184.88085 * 11 10 9 14 14 N 1.31614 * 120.00026 * 352.61137 * 13 11 10 15 15 Si 1.86796 * 119.99792 * 172.89214 * 13 11 10 16 16 H 1.48496 * 109.47599 * 94.98566 * 15 13 11 17 17 H 1.48499 * 109.47185 * 214.98806 * 15 13 11 18 18 H 1.48507 * 109.47099 * 334.98650 * 15 13 11 19 19 C 1.47016 * 108.70308 * 335.55176 * 10 9 7 20 20 C 1.54329 * 107.27107 * 1.28756 * 19 10 9 21 21 H 1.09005 * 110.71756 * 263.65505 * 20 19 10 22 22 O 1.42897 * 110.72284 * 140.55851 * 20 19 10 23 23 S 1.81397 * 109.47527 * 239.99637 * 2 1 3 24 24 C 1.81395 * 101.92009 * 60.00043 * 23 2 1 25 25 O 1.42098 * 108.57916 * 174.49085 * 23 2 1 26 26 O 1.42099 * 108.57682 * 305.51248 * 23 2 1 27 27 H 1.09001 * 109.47509 * 300.00695 * 1 2 3 28 28 H 1.09002 * 109.47325 * 60.00390 * 1 2 3 29 29 H 1.09002 * 109.47615 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47471 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47144 * 299.99814 * 3 2 1 32 32 H 1.09001 * 109.47451 * 59.99270 * 3 2 1 33 33 H 0.96995 * 120.00591 * 0.02562 * 6 4 2 34 34 H 1.08994 * 110.49803 * 160.34624 * 9 7 6 35 35 H 1.09003 * 110.34234 * 37.95488 * 9 7 6 36 36 H 0.96999 * 120.00183 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.88708 * 120.70243 * 19 10 9 38 38 H 1.08994 * 109.88023 * 241.87095 * 19 10 9 39 39 H 0.96703 * 113.99686 * 61.44624 * 22 20 19 40 40 H 1.08997 * 109.47607 * 60.00326 * 24 23 2 41 41 H 1.09008 * 109.46872 * 180.02562 * 24 23 2 42 42 H 1.08999 * 109.47317 * 299.99746 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.7295 -1.6964 1.1194 6 7 1.7066 -0.2497 2.4546 7 6 2.1944 -0.9406 3.6509 8 1 3.1645 -1.4015 3.4650 9 6 1.1678 -1.9913 4.1496 10 7 0.1740 -1.2123 4.9105 11 6 -1.1236 -1.5836 5.1420 12 1 -1.4730 -2.5539 4.8215 13 6 -1.9897 -0.7128 5.7889 14 7 -1.5314 0.4063 6.3083 15 14 -3.8044 -1.1332 5.9292 16 1 -4.0600 -1.7943 7.2341 17 1 -4.6092 0.1115 5.8388 18 1 -4.1866 -2.0510 4.8261 19 6 0.8085 0.0261 5.3849 20 6 2.2609 0.0258 4.8629 21 1 2.9440 -0.3520 5.6238 22 8 2.6480 1.3361 4.4442 23 16 2.1347 -0.8552 -1.4810 24 6 1.4230 0.1513 -2.8117 25 8 3.5496 -0.7331 -1.5282 26 8 1.5480 -2.1485 -1.5282 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.1487 0.5387 2.5436 34 1 1.6532 -2.7220 4.7964 35 1 0.6932 -2.4885 3.3036 36 1 -2.1367 1.0150 6.7600 37 1 0.2737 0.8908 4.9919 38 1 0.8062 0.0499 6.4745 39 1 2.6303 1.9960 5.1508 40 1 1.7894 1.1745 -2.7292 41 1 1.7154 -0.2629 -3.7767 42 1 0.3361 0.1468 -2.7292 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220457282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:42:05 Heat of formation + Delta-G solvation = -152.502668 kcal Electronic energy + Delta-G solvation = -26978.705129 eV Core-core repulsion = 23086.212770 eV Total energy + Delta-G solvation = -3892.492359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.128 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.45457 -39.56769 -38.07643 -37.05222 -36.64608 -36.35548 -35.25007 -33.42149 -30.47712 -30.09551 -28.84791 -28.44634 -26.43652 -24.99942 -22.57669 -22.10738 -21.27581 -19.78645 -19.10600 -18.56883 -18.27852 -17.72680 -17.18493 -16.91357 -16.74980 -16.49112 -16.17021 -15.80811 -15.54052 -15.01088 -14.60256 -14.21704 -14.15044 -14.11486 -14.02855 -13.91481 -13.71891 -13.26961 -13.19933 -13.18524 -13.13332 -13.06345 -12.95693 -12.78800 -12.54629 -12.45386 -12.07020 -11.96750 -11.91876 -11.78050 -11.44323 -11.03691 -10.87433 -10.76511 -10.19246 -8.93022 -7.89762 -5.23566 -1.06027 1.34025 1.45918 1.47228 1.56282 1.72720 1.89630 2.46274 2.83777 2.98765 3.10766 3.30670 3.35692 3.52387 3.58904 3.68397 3.80710 3.91011 4.10013 4.21893 4.31648 4.51077 4.52255 4.55654 4.57132 4.60137 4.67502 4.76994 4.83765 4.92826 5.14816 5.17678 5.37412 5.38770 5.47453 5.67522 6.13297 6.33515 6.83429 6.99518 7.06662 7.69831 8.33816 9.20273 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.004295 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.999422 B = 6517.396604 C = 7224.689170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.565 4.565 3 C -0.142 4.142 4 C 0.536 3.464 5 O -0.587 6.587 6 N -0.669 5.669 7 C 0.140 3.860 8 H 0.100 0.900 9 C 0.121 3.879 10 N -0.615 5.615 11 C -0.245 4.245 12 H 0.074 0.926 13 C -0.051 4.051 14 N -0.942 5.942 15 Si 0.972 3.028 16 H -0.290 1.290 17 H -0.289 1.289 18 H -0.274 1.274 19 C 0.161 3.839 20 C 0.089 3.911 21 H 0.089 0.911 22 O -0.560 6.560 23 S 2.426 3.574 24 C -0.627 4.627 25 O -0.973 6.973 26 O -0.979 6.979 27 H 0.083 0.917 28 H 0.133 0.867 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.414 0.586 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.249 0.751 37 H 0.036 0.964 38 H 0.017 0.983 39 H 0.397 0.603 40 H 0.170 0.830 41 H 0.152 0.848 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.736 8.583 -15.341 18.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.655 4.655 3 C -0.199 4.199 4 C 0.322 3.678 5 O -0.469 6.469 6 N -0.318 5.318 7 C 0.034 3.966 8 H 0.118 0.882 9 C -0.005 4.005 10 N -0.342 5.342 11 C -0.374 4.374 12 H 0.092 0.908 13 C -0.245 4.245 14 N -0.590 5.590 15 Si 0.800 3.200 16 H -0.217 1.217 17 H -0.215 1.215 18 H -0.199 1.199 19 C 0.036 3.964 20 C 0.028 3.972 21 H 0.107 0.893 22 O -0.367 6.367 23 S 2.610 3.390 24 C -0.781 4.781 25 O -0.971 6.971 26 O -0.976 6.976 27 H 0.102 0.898 28 H 0.151 0.849 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.148 0.852 32 H 0.108 0.892 33 H 0.251 0.749 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.035 0.965 39 H 0.247 0.753 40 H 0.188 0.812 41 H 0.170 0.830 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.661 6.925 -15.858 18.207 hybrid contribution -1.705 0.568 1.580 2.393 sum 3.956 7.494 -14.278 16.603 Atomic orbital electron populations 1.21967 0.85989 1.04599 1.07654 1.30414 1.09479 1.11795 1.13811 1.21987 1.02465 0.87605 1.07881 1.19888 0.79288 0.83377 0.85264 1.90787 1.40793 1.28171 1.87115 1.45258 1.51535 1.31203 1.03770 1.22193 0.97404 0.92993 0.84058 0.88165 1.22132 0.90364 0.93690 0.94331 1.44507 1.07970 1.20411 1.61347 1.19324 0.85523 0.99929 1.32588 0.90809 1.25471 1.01760 0.96882 1.00343 1.70102 1.34254 1.12790 1.41853 0.85174 0.80350 0.76802 0.77628 1.21734 1.21494 1.19939 1.21676 0.89220 0.89259 0.96269 1.23209 0.95713 0.83807 0.94440 0.89333 1.86361 1.90239 1.18702 1.41426 1.07784 0.75426 0.76945 0.78891 1.30177 1.15866 1.16668 1.15430 1.93497 1.29891 1.87454 1.86210 1.93505 1.79689 1.38207 1.86233 0.89838 0.84916 0.91950 0.90952 0.85175 0.89191 0.74887 0.94090 0.94605 0.94130 0.94622 0.96499 0.75297 0.81205 0.83028 0.81680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.12 71.98 0.58 -2.09 16 2 C -0.56 -13.03 0.72 -11.54 -0.01 -13.04 16 3 C -0.14 -2.11 8.12 71.98 0.58 -1.53 16 4 C 0.54 18.55 6.50 87.66 0.57 19.12 16 5 O -0.59 -25.38 15.26 -0.16 0.00 -25.38 16 6 N -0.67 -22.74 4.60 -435.60 -2.00 -24.74 16 7 C 0.14 5.14 3.31 46.46 0.15 5.29 16 8 H 0.10 3.66 7.54 -2.39 -0.02 3.64 16 9 C 0.12 5.17 6.95 86.93 0.60 5.77 16 10 N -0.61 -30.02 3.39 -691.55 -2.35 -32.37 16 11 C -0.24 -13.27 10.27 84.03 0.86 -12.41 16 12 H 0.07 3.97 7.84 -2.91 -0.02 3.95 16 13 C -0.05 -2.72 5.48 84.86 0.46 -2.26 16 14 N -0.94 -52.31 10.36 21.65 0.22 -52.09 16 15 Si 0.97 43.87 29.56 68.60 2.03 45.90 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 C 0.16 7.12 5.14 86.73 0.45 7.56 16 20 C 0.09 3.01 4.12 31.79 0.13 3.14 16 21 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 22 O -0.56 -16.04 12.67 -148.98 -1.89 -17.93 16 23 S 2.43 59.75 3.65 -56.49 -0.21 59.55 16 24 C -0.63 -4.73 9.72 113.37 1.10 -3.63 16 25 O -0.97 -31.68 17.76 -125.75 -2.23 -33.91 16 26 O -0.98 -33.66 17.76 -125.75 -2.23 -35.89 16 27 H 0.08 1.68 7.56 -2.39 -0.02 1.66 16 28 H 0.13 0.92 6.56 -2.39 -0.02 0.90 16 29 H 0.06 1.45 8.06 -2.39 -0.02 1.43 16 30 H 0.07 1.26 8.06 -2.39 -0.02 1.24 16 31 H 0.13 0.53 6.56 -2.39 -0.02 0.51 16 32 H 0.09 1.35 7.56 -2.39 -0.02 1.33 16 33 H 0.41 13.15 7.23 -92.71 -0.67 12.48 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 37 H 0.04 1.73 7.22 -2.39 -0.02 1.71 16 38 H 0.02 0.84 7.60 -2.39 -0.02 0.82 16 39 H 0.40 8.36 9.11 -74.06 -0.67 7.69 16 40 H 0.17 0.12 6.87 -2.39 -0.02 0.10 16 41 H 0.15 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.17 0.32 6.87 -2.39 -0.02 0.31 16 Total: -1.00 -86.09 350.28 -3.45 -89.54 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -0.29 Total: 21.39 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 5.49 Total: 5.93 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -4.13 Total: -109.20 kcal Atomic # 8 Polarization: -106.76 SS G_CDS: -6.36 Total: -113.11 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 59.75 SS G_CDS: -0.21 Total: 59.55 kcal Total: -86.09 -3.45 -89.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220457282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.963 kcal (2) G-P(sol) polarization free energy of solvation -86.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds