Wall clock time and date at job start Fri Apr 10 2020 14:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99836 * 2 1 4 4 N 1.46496 * 109.46874 * 125.00307 * 3 2 1 5 5 C 1.46497 * 120.00261 * 274.94544 * 4 3 2 6 6 C 1.50705 * 109.47555 * 263.10338 * 5 4 3 7 7 H 1.07997 * 119.99499 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00033 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00332 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 120.00038 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47135 * 90.00220 * 10 8 6 12 12 H 1.48495 * 109.47185 * 210.00464 * 10 8 6 13 13 H 1.48497 * 109.46798 * 330.00320 * 10 8 6 14 14 C 1.34776 * 120.00114 * 94.95331 * 4 3 2 15 15 O 1.21369 * 119.99671 * 3.67939 * 14 4 3 16 16 C 1.49332 * 120.00232 * 183.69307 * 14 4 3 17 17 O 1.21392 * 120.00342 * 354.26784 * 16 14 4 18 18 N 1.34778 * 120.00153 * 174.54908 * 16 14 4 19 19 C 1.39916 * 120.00397 * 184.07461 * 18 16 14 20 20 C 1.38876 * 120.89397 * 335.10686 * 19 18 16 21 21 N 1.32461 * 119.08179 * 179.97438 * 20 19 18 22 22 C 1.31762 * 121.03116 * 359.97438 * 21 20 19 23 23 N 1.31823 * 121.98372 * 359.97438 * 22 21 20 24 24 C 1.32702 * 120.79185 * 359.70671 * 23 22 21 25 25 O 1.35576 * 120.54607 * 180.28826 * 24 23 22 26 26 C 1.42903 * 117.00350 * 0.28217 * 25 24 23 27 27 H 1.07994 * 120.00405 * 359.97438 * 1 2 3 28 28 H 1.08007 * 119.99498 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.00405 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.46990 * 5.00532 * 3 2 1 31 31 H 1.08999 * 109.47716 * 245.00726 * 3 2 1 32 32 H 1.08998 * 109.47012 * 23.10465 * 5 4 3 33 33 H 1.09007 * 109.47197 * 143.10503 * 5 4 3 34 34 H 0.96996 * 119.99705 * 179.97438 * 9 8 6 35 35 H 0.97000 * 119.99896 * 4.08089 * 18 16 14 36 36 H 1.07996 * 120.45958 * 359.97261 * 20 19 18 37 37 H 1.07995 * 119.00595 * 179.97438 * 22 21 20 38 38 H 1.08997 * 109.47051 * 300.00130 * 26 25 24 39 39 H 1.08994 * 109.46689 * 59.99841 * 26 25 24 40 40 H 1.08997 * 109.47121 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5289 1.7631 2.4520 6 6 2.8693 3.2172 2.6544 7 1 3.3804 3.7653 1.8768 8 6 2.5272 3.8479 3.8317 9 7 1.9043 3.1804 4.7784 10 14 2.9486 5.6505 4.0823 11 1 1.8273 6.4933 3.5949 12 1 3.1716 5.9105 5.5272 13 1 4.1818 5.9805 3.3238 14 6 4.2774 0.9598 0.9573 15 8 4.6794 0.6668 -0.1498 16 6 5.2050 0.9080 2.1265 17 8 4.8335 1.2994 3.2138 18 7 6.4565 0.4318 1.9733 19 6 7.2971 0.3033 3.0843 20 6 7.1100 1.0883 4.2146 21 7 7.9268 0.9365 5.2463 22 6 8.9065 0.0562 5.2132 23 7 9.1210 -0.7106 4.1626 24 6 8.3445 -0.6260 3.0899 25 8 8.5661 -1.4211 2.0144 26 6 9.6562 -2.3410 2.1011 27 1 -0.5400 0.9352 0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0897 31 1 2.6212 1.4028 -0.9314 32 1 1.4491 1.6301 2.5183 33 1 3.0166 1.1652 3.2220 34 1 1.6641 3.6241 5.6068 35 1 6.7745 0.1782 1.0926 36 1 6.3097 1.8125 4.2518 37 1 9.5533 -0.0401 6.0727 38 1 10.5845 -1.7908 2.2547 39 1 9.4932 -3.0195 2.9384 40 1 9.7226 -2.9139 1.1762 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340631604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:06 Heat of formation + Delta-G solvation = -3.209960 kcal Electronic energy + Delta-G solvation = -27115.339038 eV Core-core repulsion = 23126.169296 eV Total energy + Delta-G solvation = -3989.169742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50690 -40.18231 -38.56431 -38.16249 -36.06369 -34.90098 -33.30900 -33.09203 -32.11937 -30.41141 -27.74446 -27.58000 -26.58175 -24.73193 -23.85925 -23.22440 -22.11660 -20.16390 -19.45246 -18.82696 -18.08755 -17.37920 -16.82126 -16.62667 -16.27830 -15.87375 -15.29391 -15.25036 -15.14890 -14.67020 -14.54796 -14.33059 -14.13165 -13.72553 -13.47183 -12.91465 -12.76393 -12.35217 -12.27995 -11.82931 -11.74834 -11.58463 -11.27611 -11.19010 -11.06596 -10.92139 -10.84543 -10.51050 -10.12603 -10.03771 -9.73195 -9.44629 -9.23823 -8.75862 -8.32949 -8.18791 -7.89804 -6.05893 -4.09688 0.83832 1.12261 1.99860 2.34782 2.70551 2.78703 3.29645 3.37382 3.39865 3.63630 3.86728 3.97378 4.04029 4.33782 4.42389 4.75520 4.78971 5.05035 5.08599 5.12355 5.24355 5.30362 5.35574 5.41424 5.64803 5.78282 6.04859 6.06049 6.19469 6.50056 6.55560 6.77996 6.81398 6.94556 6.99784 7.20568 7.37149 7.41137 7.82027 8.01228 8.07821 8.13774 8.19772 8.52645 8.91945 9.53947 11.02649 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010731 B = 0.004886 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.636044 B = 5729.177980 C = 7765.261147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C 0.138 3.862 4 N -0.552 5.552 5 C 0.221 3.779 6 C -0.523 4.523 7 H 0.055 0.945 8 C 0.071 3.929 9 N -0.887 5.887 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.511 3.489 15 O -0.557 6.557 16 C 0.494 3.506 17 O -0.436 6.436 18 N -0.640 5.640 19 C 0.044 3.956 20 C 0.157 3.843 21 N -0.515 5.515 22 C 0.300 3.700 23 N -0.559 5.559 24 C 0.332 3.668 25 O -0.303 6.303 26 C 0.041 3.959 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.263 0.737 35 H 0.424 0.576 36 H 0.208 0.792 37 H 0.199 0.801 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.722 -9.267 -5.114 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.180 4.180 3 C 0.015 3.985 4 N -0.281 5.281 5 C 0.103 3.897 6 C -0.562 4.562 7 H 0.073 0.927 8 C -0.132 4.132 9 N -0.525 5.525 10 Si 0.721 3.279 11 H -0.208 1.208 12 H -0.210 1.210 13 H -0.200 1.200 14 C 0.293 3.707 15 O -0.438 6.438 16 C 0.277 3.723 17 O -0.304 6.304 18 N -0.289 5.289 19 C -0.057 4.057 20 C -0.007 4.007 21 N -0.232 5.232 22 C 0.012 3.988 23 N -0.289 5.289 24 C 0.141 3.859 25 O -0.207 6.207 26 C -0.054 4.054 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.262 0.738 36 H 0.224 0.776 37 H 0.215 0.785 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.899 -9.212 -4.243 14.172 hybrid contribution 0.071 0.738 -0.702 1.022 sum 9.970 -8.473 -4.946 13.988 Atomic orbital electron populations 1.23810 0.95712 1.01812 1.00779 1.23285 0.96173 0.98878 0.99679 1.20627 0.92186 0.95408 0.90242 1.48276 1.07110 1.59213 1.13532 1.20131 0.96141 0.96554 0.76878 1.21216 1.38839 0.94536 1.01592 0.92684 1.24803 0.94873 0.98004 0.95514 1.69916 1.39803 1.36328 1.06452 0.86588 0.78728 0.85132 0.77500 1.20755 1.21018 1.19978 1.19525 0.83723 0.79652 0.87778 1.90675 1.76498 1.51403 1.25240 1.20575 0.82003 0.79225 0.90528 1.90847 1.73287 1.40109 1.26196 1.42983 1.11952 1.64162 1.09757 1.18804 0.94783 0.99038 0.93084 1.24215 0.96257 0.94680 0.85569 1.68553 1.05311 1.20629 1.28727 1.24644 0.92970 0.87012 0.94208 1.68060 1.29913 1.29350 1.01593 1.19855 0.90996 0.88131 0.86888 1.86217 1.51270 1.48693 1.34558 1.22927 0.87841 0.91384 1.03274 0.88248 0.88659 0.87693 0.89269 0.89305 0.94817 0.90785 0.92730 0.73829 0.77632 0.78471 0.92039 0.92021 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 14.32 29.01 0.42 -2.05 16 2 C -0.16 -2.47 9.84 -36.03 -0.35 -2.82 16 3 C 0.14 2.38 5.90 -5.20 -0.03 2.35 16 4 N -0.55 -11.34 2.46 -176.98 -0.44 -11.77 16 5 C 0.22 5.32 4.79 -5.19 -0.02 5.30 16 6 C -0.52 -13.76 8.31 -34.44 -0.29 -14.05 16 7 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 8 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 9 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 10 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.51 10.26 7.66 -11.64 -0.09 10.17 16 15 O -0.56 -11.15 15.97 5.48 0.09 -11.06 16 16 C 0.49 9.61 7.66 -11.64 -0.09 9.52 16 17 O -0.44 -9.64 9.34 5.46 0.05 -9.59 16 18 N -0.64 -10.46 5.30 -10.00 -0.05 -10.51 16 19 C 0.04 0.71 6.52 -83.26 -0.54 0.17 16 20 C 0.16 2.71 10.07 -17.04 -0.17 2.54 16 21 N -0.51 -8.18 10.43 -14.49 -0.15 -8.33 16 22 C 0.30 3.90 12.27 -92.16 -1.13 2.77 16 23 N -0.56 -7.51 9.38 -14.48 -0.14 -7.64 16 24 C 0.33 4.77 7.55 -16.51 -0.12 4.64 16 25 O -0.30 -3.82 10.03 -18.42 -0.18 -4.00 16 26 C 0.04 0.36 10.41 101.05 1.05 1.41 16 27 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 28 H 0.10 1.11 8.06 -52.48 -0.42 0.68 16 29 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.09 1.51 7.76 -51.92 -0.40 1.11 16 31 H 0.09 1.49 7.24 -51.93 -0.38 1.11 16 32 H 0.03 0.85 8.02 -51.93 -0.42 0.43 16 33 H 0.07 1.93 5.41 -51.93 -0.28 1.65 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.42 6.26 7.93 -40.82 -0.32 5.94 16 36 H 0.21 4.01 5.59 -52.49 -0.29 3.71 16 37 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 39 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -30.52 352.30 -5.86 -36.38 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -4.58 Total: 7.67 kcal Atomic # 6 Polarization: 23.25 SS G_CDS: -1.48 Total: 21.78 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -0.04 Total: -62.59 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.52 -5.86 -36.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340631604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.168 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds