Wall clock time and date at job start Fri Apr 10 2020 14:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99836 * 2 1 4 4 N 1.46496 * 109.46874 * 125.00307 * 3 2 1 5 5 C 1.46497 * 120.00261 * 274.94544 * 4 3 2 6 6 C 1.50705 * 109.47555 * 263.10338 * 5 4 3 7 7 H 1.07997 * 119.99499 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00033 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00332 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 120.00038 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47135 * 90.00220 * 10 8 6 12 12 H 1.48495 * 109.47185 * 210.00464 * 10 8 6 13 13 H 1.48497 * 109.46798 * 330.00320 * 10 8 6 14 14 C 1.34776 * 120.00114 * 94.95331 * 4 3 2 15 15 O 1.21369 * 119.99671 * 3.67939 * 14 4 3 16 16 C 1.49332 * 120.00232 * 183.69307 * 14 4 3 17 17 O 1.21392 * 120.00342 * 354.26784 * 16 14 4 18 18 N 1.34778 * 120.00153 * 174.54908 * 16 14 4 19 19 C 1.39916 * 120.00397 * 184.07461 * 18 16 14 20 20 C 1.38876 * 120.89397 * 335.10686 * 19 18 16 21 21 N 1.32461 * 119.08179 * 179.97438 * 20 19 18 22 22 C 1.31762 * 121.03116 * 359.97438 * 21 20 19 23 23 N 1.31823 * 121.98372 * 359.97438 * 22 21 20 24 24 C 1.32702 * 120.79185 * 359.70671 * 23 22 21 25 25 O 1.35576 * 120.54607 * 180.28826 * 24 23 22 26 26 C 1.42903 * 117.00350 * 0.28217 * 25 24 23 27 27 H 1.07994 * 120.00405 * 359.97438 * 1 2 3 28 28 H 1.08007 * 119.99498 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.00405 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.46990 * 5.00532 * 3 2 1 31 31 H 1.08999 * 109.47716 * 245.00726 * 3 2 1 32 32 H 1.08998 * 109.47012 * 23.10465 * 5 4 3 33 33 H 1.09007 * 109.47197 * 143.10503 * 5 4 3 34 34 H 0.96996 * 119.99705 * 179.97438 * 9 8 6 35 35 H 0.97000 * 119.99896 * 4.08089 * 18 16 14 36 36 H 1.07996 * 120.45958 * 359.97261 * 20 19 18 37 37 H 1.07995 * 119.00595 * 179.97438 * 22 21 20 38 38 H 1.08997 * 109.47051 * 300.00130 * 26 25 24 39 39 H 1.08994 * 109.46689 * 59.99841 * 26 25 24 40 40 H 1.08997 * 109.47121 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5289 1.7631 2.4520 6 6 2.8693 3.2172 2.6544 7 1 3.3804 3.7653 1.8768 8 6 2.5272 3.8479 3.8317 9 7 1.9043 3.1804 4.7784 10 14 2.9486 5.6505 4.0823 11 1 1.8273 6.4933 3.5949 12 1 3.1716 5.9105 5.5272 13 1 4.1818 5.9805 3.3238 14 6 4.2774 0.9598 0.9573 15 8 4.6794 0.6668 -0.1498 16 6 5.2050 0.9080 2.1265 17 8 4.8335 1.2994 3.2138 18 7 6.4565 0.4318 1.9733 19 6 7.2971 0.3033 3.0843 20 6 7.1100 1.0883 4.2146 21 7 7.9268 0.9365 5.2463 22 6 8.9065 0.0562 5.2132 23 7 9.1210 -0.7106 4.1626 24 6 8.3445 -0.6260 3.0899 25 8 8.5661 -1.4211 2.0144 26 6 9.6562 -2.3410 2.1011 27 1 -0.5400 0.9352 0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0897 31 1 2.6212 1.4028 -0.9314 32 1 1.4491 1.6301 2.5183 33 1 3.0166 1.1652 3.2220 34 1 1.6641 3.6241 5.6068 35 1 6.7745 0.1782 1.0926 36 1 6.3097 1.8125 4.2518 37 1 9.5533 -0.0401 6.0727 38 1 10.5845 -1.7908 2.2547 39 1 9.4932 -3.0195 2.9384 40 1 9.7226 -2.9139 1.1762 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340631604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:41:05 Heat of formation + Delta-G solvation = -24.736113 kcal Electronic energy + Delta-G solvation = -27116.272482 eV Core-core repulsion = 23126.169296 eV Total energy + Delta-G solvation = -3990.103186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.74551 -41.64331 -39.79822 -39.47568 -37.62915 -36.27207 -35.01542 -34.23681 -33.81865 -31.64736 -29.43331 -28.58374 -28.05716 -26.08810 -25.05555 -24.93436 -23.59629 -21.52807 -20.72316 -19.87442 -19.49332 -18.75669 -18.59025 -18.17677 -17.42533 -17.40249 -16.81059 -16.69650 -16.30145 -16.17670 -15.86607 -15.72235 -15.35912 -15.07014 -14.71987 -14.48507 -14.24145 -14.11466 -13.57873 -13.08505 -13.03676 -12.84089 -12.75718 -12.73170 -12.39877 -12.36818 -12.35251 -12.26465 -11.89594 -11.64057 -11.21578 -10.79596 -10.52810 -10.43112 -10.04968 -9.67594 -9.38970 -8.12549 -6.22008 -0.38300 -0.08007 0.49018 1.04677 1.41001 1.43787 1.50227 1.52117 1.69427 2.11534 2.41502 2.57699 2.66541 2.94554 3.21321 3.21924 3.27726 3.63239 3.82840 4.03375 4.15299 4.39081 4.41661 4.45601 4.49445 4.73327 4.77874 4.83422 4.84713 5.02859 5.25167 5.39707 5.45008 5.66683 5.67339 5.77141 5.81968 5.92415 5.95180 6.12523 6.27498 6.64808 6.81725 6.94599 6.99702 7.44877 8.95404 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010731 B = 0.004886 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.636044 B = 5729.177980 C = 7765.261147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C 0.135 3.865 4 N -0.557 5.557 5 C 0.241 3.759 6 C -0.525 4.525 7 H 0.047 0.953 8 C 0.026 3.974 9 N -0.918 5.918 10 Si 0.949 3.051 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.275 1.275 14 C 0.509 3.491 15 O -0.556 6.556 16 C 0.494 3.506 17 O -0.470 6.470 18 N -0.623 5.623 19 C 0.023 3.977 20 C 0.147 3.853 21 N -0.536 5.536 22 C 0.312 3.688 23 N -0.553 5.553 24 C 0.345 3.655 25 O -0.309 6.309 26 C 0.033 3.967 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.263 0.737 35 H 0.431 0.569 36 H 0.179 0.821 37 H 0.242 0.758 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.959 -10.100 -5.686 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.203 4.203 3 C 0.014 3.986 4 N -0.287 5.287 5 C 0.121 3.879 6 C -0.564 4.564 7 H 0.065 0.935 8 C -0.174 4.174 9 N -0.557 5.557 10 Si 0.775 3.225 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.200 1.200 14 C 0.292 3.708 15 O -0.437 6.437 16 C 0.277 3.723 17 O -0.341 6.341 18 N -0.272 5.272 19 C -0.078 4.078 20 C -0.017 4.017 21 N -0.254 5.254 22 C 0.025 3.975 23 N -0.284 5.284 24 C 0.154 3.846 25 O -0.213 6.213 26 C -0.061 4.061 27 H 0.123 0.877 28 H 0.137 0.863 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.271 0.729 36 H 0.195 0.805 37 H 0.258 0.742 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.166 -10.069 -4.870 15.804 hybrid contribution -0.202 0.866 -0.563 1.053 sum 10.964 -9.203 -5.433 15.311 Atomic orbital electron populations 1.24069 0.95068 1.03231 0.97518 1.23147 0.96803 0.97775 1.02614 1.20784 0.91909 0.96763 0.89128 1.48224 1.07869 1.59360 1.13210 1.19629 0.94774 0.95244 0.78233 1.21396 1.38093 0.95602 1.01300 0.93474 1.25491 0.94899 1.01646 0.95367 1.70017 1.41038 1.37805 1.06864 0.85698 0.78614 0.80929 0.77241 1.19628 1.20960 1.20003 1.19659 0.83707 0.79445 0.88023 1.90660 1.76431 1.51445 1.25213 1.20526 0.82750 0.79199 0.89857 1.90855 1.74129 1.41984 1.27095 1.42749 1.10964 1.63113 1.10391 1.18769 0.95855 1.00415 0.92743 1.23791 0.96291 0.94849 0.86725 1.68558 1.06277 1.22123 1.28489 1.25516 0.91939 0.85094 0.94984 1.68231 1.29430 1.29281 1.01414 1.19892 0.89901 0.87387 0.87436 1.86229 1.52591 1.48746 1.33684 1.23277 0.86822 0.90899 1.05092 0.87726 0.86258 0.87675 0.89315 0.88905 0.96222 0.92788 0.92753 0.72917 0.80465 0.74234 0.91334 0.91723 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 14.32 67.78 0.97 -3.10 16 2 C -0.18 -5.54 9.84 25.64 0.25 -5.28 16 3 C 0.14 4.70 5.90 85.63 0.50 5.20 16 4 N -0.56 -23.37 2.46 -832.21 -2.05 -25.42 16 5 C 0.24 11.97 4.79 85.64 0.41 12.38 16 6 C -0.53 -28.28 8.31 25.60 0.21 -28.06 16 7 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 8 C 0.03 1.43 5.46 84.65 0.46 1.89 16 9 N -0.92 -53.02 13.29 21.45 0.28 -52.73 16 10 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 C 0.51 20.80 7.66 87.23 0.67 21.47 16 15 O -0.56 -22.19 15.97 -3.30 -0.05 -22.24 16 16 C 0.49 19.82 7.66 87.23 0.67 20.49 16 17 O -0.47 -21.81 9.34 -3.38 -0.03 -21.85 16 18 N -0.62 -20.63 5.30 -303.90 -1.61 -22.24 16 19 C 0.02 0.74 6.52 38.44 0.25 0.99 16 20 C 0.15 5.22 10.07 84.75 0.85 6.07 16 21 N -0.54 -16.85 10.43 -199.75 -2.08 -18.93 16 22 C 0.31 7.47 12.27 180.89 2.22 9.69 16 23 N -0.55 -13.63 9.38 -312.42 -2.93 -16.57 16 24 C 0.34 9.45 7.55 84.99 0.64 10.09 16 25 O -0.31 -7.16 10.03 -88.83 -0.89 -8.06 16 26 C 0.03 0.49 10.41 113.37 1.18 1.67 16 27 H 0.10 2.54 7.84 -2.91 -0.02 2.51 16 28 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 29 H 0.11 3.14 8.06 -2.91 -0.02 3.11 16 30 H 0.09 3.03 7.76 -2.38 -0.02 3.01 16 31 H 0.09 3.09 7.24 -2.39 -0.02 3.08 16 32 H 0.02 1.02 8.02 -2.39 -0.02 1.01 16 33 H 0.05 2.95 5.41 -2.39 -0.01 2.94 16 34 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.43 12.63 7.93 -92.71 -0.74 11.90 16 36 H 0.18 7.38 5.59 -2.91 -0.02 7.36 16 37 H 0.24 3.43 8.06 -2.91 -0.02 3.41 16 38 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 39 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 40 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -66.41 352.30 2.32 -64.10 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.36 Total: 24.54 kcal Atomic # 6 Polarization: 44.20 SS G_CDS: 9.30 Total: 53.50 kcal Atomic # 7 Polarization: -127.50 SS G_CDS: -8.39 Total: -135.89 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -0.98 Total: -52.15 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.41 2.32 -64.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340631604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.362 kcal (2) G-P(sol) polarization free energy of solvation -66.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds